genome.fa.s16.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  40  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11060699--11061246	150	3.6	149	84	3	650	24	19	22	33	1.97
11065332--11065388	24	2.4	24	82	8	64	43	5	22	28	1.75
11068781--11068847	21	3.2	21	71	12	66	38	0	0	61	0.96
11076113--11076151	21	1.9	20	84	5	51	38	0	5	56	1.22
11077892--11077948	29	2.0	28	93	3	96	52	5	21	21	1.66
11083692--11084367	234	2.9	234	94	0	1149	25	15	17	42	1.88
11088520--11088554	6	5.8	6	96	0	61	62	20	0	17	1.32
11106576--11106736	33	4.8	32	74	9	126	27	26	14	31	1.95
11106564--11106803	101	2.4	101	93	0	399	27	25	15	32	1.95
11110862--11110895	16	2.1	16	89	10	52	76	8	8	5	1.15
11111444--11111480	14	2.8	13	92	8	65	45	5	10	37	1.62
11111461--11111517	22	2.7	20	79	12	60	45	5	8	40	1.58
11111478--11111521	22	2.0	22	95	0	79	50	4	6	38	1.50
11111520--11111562	22	2.0	22	86	9	61	37	6	20	34	1.80
11111759--11111836	34	2.3	34	86	6	113	19	24	15	41	1.90
11114645--11114690	21	2.1	23	84	15	62	13	8	8	69	1.36
11123031--11123071	21	1.9	22	85	5	57	46	9	12	31	1.74
11123030--11123077	21	2.2	22	77	3	53	54	8	10	27	1.63
11123103--11123147	21	2.1	23	88	12	69	68	8	8	13	1.38
11130358--11130761	218	1.9	218	92	1	684	28	25	19	26	1.99
11130476--11130763	44	6.6	44	71	11	162	29	25	18	26	1.98
11130749--11131156	128	3.2	129	90	1	649	25	22	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11133271--11133363	39	2.4	38	84	10	116	11	5	7	75	1.18
11133285--11133349	33	1.9	34	87	6	96	13	3	10	72	1.23
11146696--11146747	18	2.9	17	80	11	52	36	0	3	59	1.16
11154704--11154741	5	7.6	5	100	0	76	36	0	0	63	0.95
11158921--11159106	35	5.3	35	82	0	210	39	28	15	17	1.89
11172229--11172336	44	2.5	44	78	3	128	22	24	24	29	1.99
11172281--11172529	129	1.9	129	90	1	392	23	22	22	30	1.99
11172673--11173005	87	3.8	87	90	0	479	25	22	21	30	1.99
11175061--11175099	13	2.9	13	88	11	53	0	25	0	74	0.82
11180306--11180346	16	2.4	17	88	8	57	65	0	7	26	1.18
11181114--11181146	7	4.6	7	96	3	57	84	0	3	12	0.72
11183061--11183113	25	2.1	25	92	0	88	37	5	7	49	1.55
11183783--11184201	89	4.7	89	80	6	440	32	14	13	39	1.85
11208264--11208299	7	5.0	7	86	6	54	44	38	0	16	1.48
11208267--11208298	15	2.1	15	94	0	55	50	34	0	15	1.45
11215127--11215191	32	2.0	32	96	0	121	36	10	18	33	1.86
11217023--11217285	40	6.6	40	86	3	300	26	28	20	24	1.99
11217023--11217285	80	3.3	79	87	3	334	26	28	20	24	1.99
11222289--11222322	17	2.0	17	88	11	52	44	0	8	47	1.34
11222748--11222896	74	2.0	74	90	0	235	30	19	20	30	1.97
11228189--11228227	17	2.2	18	95	4	71	10	30	48	10	1.70
11228689--11228734	24	2.0	23	82	4	56	17	0	52	30	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11235046--11235093	23	2.1	23	96	0	87	45	16	0	37	1.48
11235204--11235240	19	1.9	19	88	0	56	29	29	24	16	1.96
11237898--11237959	30	2.1	30	100	0	124	37	3	9	50	1.52
11239836--11239908	32	2.2	34	80	7	87	13	13	13	58	1.63
11263192--11263219	13	2.2	13	100	0	56	25	0	21	53	1.46
11268226--11268274	19	2.5	20	78	18	59	18	0	18	63	1.32
11268223--11268261	17	2.2	18	86	4	53	23	0	15	61	1.33
11276697--11276796	39	2.6	38	81	10	123	50	10	3	37	1.51
11279965--11280069	41	2.5	42	81	4	115	21	18	19	40	1.91
11283280--11283428	40	3.7	40	83	1	183	20	14	28	36	1.92
11283696--11283739	21	2.1	21	95	0	79	31	18	18	31	1.95
11284007--11284036	11	2.9	10	90	9	51	10	6	13	70	1.34
11289809--11289916	54	2.0	54	82	8	130	25	32	20	22	1.98
11292926--11293026	50	2.0	50	84	3	132	25	17	19	36	1.94
11298029--11298077	20	2.5	20	83	10	64	32	16	10	40	1.82
11301931--11302065	3	43.3	3	69	21	59	27	2	5	63	1.32
11301929--11302065	18	7.9	17	69	24	72	27	2	5	64	1.31
11301997--11302054	19	3.2	18	83	16	59	27	5	1	65	1.23
11308466--11308509	22	2.0	22	90	0	70	63	4	0	31	1.14
11309263--11309359	49	1.9	51	82	12	121	29	4	4	61	1.33
11311335--11311380	16	2.6	17	83	10	58	56	0	0	43	0.99
11332687--11332832	45	3.2	45	84	3	195	42	19	17	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11333034--11333121	39	2.2	39	85	2	113	37	19	6	36	1.78
11333777--11333831	8	6.8	8	76	12	58	61	1	0	36	1.06
11339068--11339129	31	2.0	31	96	0	115	30	11	16	41	1.83
11350275--11350307	14	2.4	14	94	0	57	63	12	3	21	1.41
11353580--11353678	28	3.5	28	82	4	101	32	12	27	28	1.92
11354664--11355139	47	10.1	47	87	2	519	26	11	17	44	1.83
11354702--11355139	141	3.1	140	88	4	589	26	11	17	44	1.83
11361545--11361643	28	3.6	27	78	9	101	33	12	26	28	1.92
11362630--11363151	47	11.1	47	88	2	543	25	12	17	44	1.84
11362630--11363103	141	3.4	141	90	2	686	25	12	17	44	1.84
11370490--11370527	17	2.2	17	90	0	58	34	7	18	39	1.80
11376400--11376472	21	3.5	21	90	0	110	8	36	16	38	1.79
11376400--11376492	21	4.4	21	84	2	107	7	39	16	36	1.77
11379266--11379304	12	3.2	12	82	7	51	38	15	7	38	1.76
11379534--11379568	18	1.9	18	94	0	61	37	20	31	11	1.88
11380368--11380405	20	1.9	20	94	0	67	57	7	0	34	1.28
11380778--11380823	21	2.2	21	88	7	67	50	32	0	17	1.47
11380799--11380837	14	2.8	14	84	0	51	48	28	0	23	1.51
11381001--11381049	14	3.6	13	81	15	55	51	26	2	20	1.59
11381013--11381049	13	2.8	13	87	4	56	51	27	0	21	1.48
11381712--11382210	115	4.4	113	83	3	615	23	20	19	35	1.95
11381732--11382170	228	1.9	230	87	2	643	24	19	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11392021--11392117	27	3.6	27	81	0	104	24	20	10	44	1.83
11392021--11392166	27	5.4	27	78	1	96	23	23	11	41	1.87
11393276--11393312	17	2.1	18	90	5	58	72	0	18	8	1.08
11396323--11396353	13	2.4	13	100	0	62	48	0	0	51	1.00
11399800--11399911	59	1.9	58	81	5	136	41	15	16	25	1.88
11400146--11400174	14	2.0	15	93	6	51	31	0	0	68	0.89
11400818--11400842	9	2.8	9	100	0	50	52	0	0	48	1.00
11405441--11405473	15	2.2	15	94	0	57	63	12	0	24	1.28
11405807--11405871	28	2.4	27	82	5	78	60	4	6	29	1.41
11408502--11408542	20	2.1	19	86	13	57	46	0	9	43	1.36
11411817--11411852	16	2.2	16	95	0	63	47	16	13	22	1.82
11413677--11413798	58	2.1	59	89	1	183	22	26	11	40	1.87
11417065--11417143	37	2.1	37	90	0	122	25	31	18	24	1.98
11417312--11417436	47	2.7	47	92	2	207	30	28	8	32	1.86
11420644--11420826	40	4.6	40	81	4	192	24	26	22	26	2.00
11421138--11421210	29	2.5	29	91	4	112	26	30	16	27	1.97
11421195--11421294	43	2.3	43	98	0	191	26	36	15	23	1.93
11423161--11423238	37	2.1	36	88	2	111	25	30	19	24	1.98
11423407--11423588	47	3.7	48	82	15	217	31	28	7	32	1.84
11430388--11430489	29	3.4	29	72	18	84	66	1	4	26	1.22
11430660--11430717	28	2.1	27	81	6	64	36	0	10	53	1.35
11430667--11430723	28	2.1	28	90	3	89	28	0	10	61	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11430756--11430850	19	5.4	19	74	21	82	32	0	1	66	0.99
11430792--11430834	9	5.0	9	83	8	54	32	0	0	67	0.91
11430792--11430834	17	2.5	18	88	7	63	32	0	0	67	0.91
11430763--11430842	40	2.0	39	85	7	108	33	0	0	66	0.92
11430750--11430912	69	2.4	69	82	6	188	33	1	1	62	1.16
11431983--11432103	58	2.1	58	81	3	136	36	9	29	23	1.88
11432278--11432411	28	4.8	28	74	0	97	41	14	24	19	1.88
11435938--11436013	9	8.4	9	88	0	107	25	7	22	44	1.79
11436175--11436199	12	2.1	12	100	0	50	16	24	36	24	1.94
11438059--11438113	26	2.1	26	83	6	67	29	12	10	47	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175