genome.fa.s16.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  101  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32148178--32148385	100	2.1	97	97	1	371	39	5	19	35	1.76
32151386--32151447	21	3.0	21	90	0	88	25	11	37	25	1.89
32153481--32153562	41	2.0	41	97	0	155	39	20	14	25	1.91
32155289--32155321	6	5.5	6	96	0	57	15	27	0	57	1.38
32156605--32156676	25	2.9	25	87	0	108	26	13	22	37	1.92
32177773--32177896	66	1.9	66	86	0	176	29	21	19	29	1.98
32180266--32180506	50	4.7	50	85	3	293	26	21	28	23	1.99
32185143--32185175	6	5.5	6	96	0	57	12	3	0	84	0.72
32189535--32189586	18	2.7	19	79	11	61	48	0	0	51	1.00
32196877--32197221	91	3.6	98	87	8	409	46	2	2	48	1.29
32196847--32197144	91	3.3	91	96	0	533	46	3	3	46	1.34
32197475--32197562	44	2.0	44	86	6	124	35	25	4	35	1.76
32202339--32202587	108	2.4	99	78	13	288	28	1	14	56	1.46
32205812--32205872	17	3.4	17	70	12	59	50	14	3	31	1.59
32205803--32205877	37	2.0	37	100	0	150	45	16	5	33	1.69
32205803--32205894	37	2.5	37	91	7	134	46	15	5	32	1.68
32211610--32211652	20	2.2	20	83	8	52	69	9	2	18	1.26
32211753--32212041	102	2.9	101	89	2	436	56	15	1	26	1.49
32211752--32212012	48	5.2	48	64	15	123	56	15	1	26	1.50
32212007--32212092	42	2.0	43	97	2	165	51	16	2	30	1.57
32211776--32212082	102	3.0	102	81	10	349	56	15	1	26	1.49
32212049--32212275	107	2.1	108	87	3	323	60	12	1	25	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32212091--32212303	107	2.0	107	85	5	286	63	10	0	24	1.32
32214561--32214617	11	5.2	11	83	10	64	21	31	1	45	1.62
32216431--32216473	18	2.4	18	88	0	59	18	27	9	44	1.80
32216897--32217014	49	2.4	49	97	0	218	44	3	6	44	1.47
32220097--32220502	124	3.3	124	89	2	600	31	19	16	31	1.95
32224428--32224540	41	2.8	41	87	0	163	31	24	22	21	1.98
32225641--32225669	14	2.1	14	100	0	58	44	20	0	34	1.52
32230487--32230514	13	2.2	13	100	0	56	35	0	35	28	1.58
32233798--32233837	18	2.2	19	86	4	55	35	0	0	65	0.93
32233784--32233833	16	3.2	16	72	11	50	34	2	0	64	1.05
32233960--32234261	86	3.5	87	83	4	362	33	16	11	39	1.84
32234394--32234467	35	2.1	35	84	0	94	20	18	16	44	1.87
32234429--32234665	87	2.7	87	86	4	309	29	13	12	44	1.80
32234689--32234760	35	2.1	35	86	5	101	23	20	12	43	1.86
32234724--32234936	88	2.4	86	89	3	336	30	15	12	42	1.83
32234296--32235018	293	2.5	294	90	1	1132	30	14	12	42	1.83
32234972--32235097	59	2.1	59	82	0	144	28	9	11	50	1.69
32259231--32259265	9	3.8	9	92	3	52	74	8	2	14	1.17
32259231--32259276	19	2.4	19	85	7	58	73	8	4	13	1.21
32266456--32266635	62	2.9	62	80	11	165	30	11	8	49	1.69
32266657--32266697	21	1.9	22	85	5	57	43	17	2	36	1.62
32276589--32276613	11	2.3	11	100	0	50	16	0	16	68	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32278694--32278730	16	2.3	16	90	0	56	35	0	0	64	0.94
32279043--32279107	31	2.1	31	82	5	78	58	15	7	18	1.60
32281587--32281653	31	2.2	31	89	5	100	35	7	10	46	1.66
32292270--32292310	21	2.0	21	95	0	73	36	4	17	41	1.71
32292271--32292318	21	2.3	21	88	0	69	37	6	14	41	1.71
32305913--32305945	16	2.1	16	94	0	57	24	0	21	54	1.45
32305949--32305990	21	2.0	21	86	9	59	21	4	9	64	1.42
32315126--32315164	18	2.3	17	91	8	62	69	5	0	25	1.09
32315123--32315166	18	2.7	15	81	18	61	65	4	0	29	1.12
32320870--32320904	17	2.1	17	88	0	52	42	34	2	20	1.66
32322248--32322285	18	2.2	17	86	9	51	44	5	21	28	1.73
32322587--32322621	6	5.7	6	86	6	52	22	14	0	62	1.31
32325091--32325139	11	4.3	11	77	10	53	6	0	32	61	1.21
32327848--32327877	2	15.0	2	92	0	51	50	3	0	46	1.18
32328354--32328388	17	2.1	17	94	0	61	25	5	8	60	1.49
32329137--32329258	64	1.9	64	96	0	226	18	22	40	18	1.92
32331127--32331167	20	2.0	20	85	0	55	41	2	17	39	1.62
32344757--32344796	21	1.9	21	85	10	55	22	10	5	62	1.46
32350287--32350340	19	2.9	18	78	10	56	5	22	0	72	1.05
32350297--32350345	12	3.9	12	82	15	55	2	20	0	77	0.87
32350929--32350969	15	2.7	15	85	14	50	14	2	26	56	1.51
32351969--32352122	57	2.8	56	81	4	159	24	3	41	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32353662--32353726	31	2.1	31	91	0	103	24	13	10	50	1.74
32362924--32362959	19	1.9	20	88	11	58	36	8	5	50	1.56
32404940--32404983	21	2.1	21	91	4	72	59	6	11	22	1.55
32413399--32413453	24	2.2	25	81	15	69	38	3	14	43	1.63
32420375--32420450	3	25.3	3	70	15	50	63	5	1	30	1.25
32420390--32420475	14	6.1	14	72	11	50	67	6	1	24	1.22
32424152--32424301	75	2.0	72	88	6	221	26	13	21	39	1.90
32424493--32425243	108	6.8	108	77	8	474	26	21	14	37	1.92
32424493--32425271	35	21.3	37	80	8	658	26	21	14	37	1.92
32424534--32425262	223	3.3	223	81	8	750	26	21	14	37	1.92
32424493--32425252	260	3.0	254	80	7	837	26	21	14	37	1.92
32448123--32448313	50	3.8	50	86	4	251	40	13	14	31	1.84
32448123--32448313	102	1.9	100	83	6	251	40	13	14	31	1.84
32470465--32470499	18	1.9	18	100	0	70	45	5	14	34	1.68
32471359--32471433	33	2.2	34	92	2	125	42	13	6	37	1.70
32480229--32480296	29	2.3	29	82	5	84	27	29	13	29	1.94
32480118--32480650	174	3.1	174	99	0	1048	30	24	14	30	1.94
32480403--32480470	29	2.3	29	82	5	84	27	29	13	29	1.94
32480577--32480644	29	2.3	29	82	5	84	27	29	13	29	1.94
32489914--32489981	29	2.3	29	82	5	84	27	29	13	29	1.94
32490088--32490155	29	2.3	29	82	5	84	27	29	13	29	1.94
32489803--32490334	174	3.1	174	98	0	1021	30	24	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32490261--32490328	29	2.3	29	77	5	75	26	27	13	32	1.93
32496288--32496510	119	1.9	120	84	6	301	24	27	23	24	2.00
32496267--32496510	40	6.1	40	84	6	291	24	27	22	25	2.00
32498228--32498282	24	2.3	24	90	0	83	29	1	34	34	1.68
32499899--32499944	20	2.3	20	88	0	65	21	26	17	34	1.95
32499878--32499944	30	2.2	30	80	12	75	19	26	17	35	1.94
32501507--32501575	22	3.0	23	80	4	77	26	5	27	40	1.78
32515354--32515408	24	2.2	24	80	3	65	49	1	3	45	1.30
32516660--32516707	24	2.0	25	84	12	64	60	8	0	31	1.26
32518408--32518447	16	2.4	17	83	8	55	72	2	7	17	1.19
32519382--32519415	5	7.0	5	86	6	52	76	0	20	2	0.92
32519382--32519415	14	2.4	14	90	5	50	76	0	20	2	0.92
32524157--32524213	22	2.8	19	78	14	69	38	10	19	31	1.86
32524171--32524237	22	3.0	22	93	2	107	34	7	22	35	1.82
32524183--32524249	22	3.0	23	82	6	77	34	5	19	40	1.76
32524777--32524853	37	2.1	37	80	11	86	37	9	1	51	1.42
32524929--32524989	27	2.3	27	86	11	81	32	8	1	57	1.38
32531588--32531745	44	3.6	44	93	3	264	25	18	27	28	1.98
32531768--32531863	44	2.2	44	90	7	151	26	16	28	29	1.97
32531651--32531862	117	1.8	117	90	6	349	26	18	25	28	1.98
32531788--32531901	44	2.6	44	81	5	115	27	19	24	28	1.98
32531830--32532105	128	2.1	129	84	5	385	31	21	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32532163--32532430	50	5.4	50	71	1	250	29	20	23	26	1.99
32532168--32532454	100	2.9	100	92	1	441	28	20	22	27	1.99
32533221--32533274	19	2.8	19	100	0	108	37	11	16	35	1.84
32533501--32533545	23	2.0	23	81	0	54	22	0	15	62	1.33
32533835--32533912	38	2.0	38	80	11	88	37	8	1	52	1.41
32538691--32538736	24	1.9	24	90	0	74	41	19	6	32	1.77
32542303--32542373	29	2.5	28	73	13	72	32	2	2	61	1.24
32543506--32543643	55	2.5	55	89	2	197	29	17	6	46	1.73
32545353--32545421	23	2.9	24	78	4	77	23	24	24	27	2.00
32545355--32545442	24	3.7	24	75	11	74	25	22	25	27	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175