genome.fa.s16.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  47  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13501229--13501387	45	3.5	45	81	0	174	24	14	25	35	1.94
13501270--13501428	45	3.6	44	83	5	169	22	13	28	35	1.92
13510305--13510384	39	2.1	39	85	4	108	27	5	22	45	1.73
13512645--13513089	138	3.2	138	90	0	692	44	6	8	40	1.59
13512979--13513203	118	1.9	118	88	3	346	44	7	7	40	1.60
13512834--13513323	256	1.9	256	91	0	793	44	6	7	41	1.60
13514730--13514922	41	4.7	41	83	1	228	20	19	29	30	1.97
13515342--13515383	22	1.9	22	90	0	66	23	0	38	38	1.55
13515336--13515412	29	2.7	28	76	7	75	20	2	41	35	1.66
13515647--13515687	21	2.0	21	85	0	55	26	0	36	36	1.57
13515653--13515717	21	3.1	21	76	8	53	21	3	46	29	1.67
13520132--13520440	43	7.3	43	78	1	300	29	16	27	26	1.97
13520201--13520435	127	1.9	127	82	0	299	31	16	25	25	1.97
13527988--13528222	81	2.9	81	90	3	393	28	11	27	32	1.91
13537671--13537719	10	4.9	10	78	9	55	26	30	16	26	1.97
13537671--13537717	20	2.3	20	89	7	69	25	31	17	25	1.97
13539258--13539315	26	2.3	26	81	3	73	79	3	12	5	1.02
13539271--13539319	26	1.9	25	95	4	89	77	2	16	4	1.01
13540358--13540404	15	3.1	15	84	9	60	70	0	17	12	1.17
13542386--13542434	10	4.9	10	78	9	55	26	30	16	26	1.97
13542386--13542432	20	2.3	20	89	7	69	25	31	17	25	1.97
13558235--13558295	29	2.1	30	87	3	88	36	6	8	49	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13561400--13561434	12	2.9	12	95	0	61	17	22	8	51	1.72
13561392--13561442	12	4.2	12	82	9	59	19	23	5	50	1.69
13561712--13562033	50	6.3	50	86	2	401	22	31	21	24	1.98
13561718--13561981	100	2.6	100	95	0	456	20	33	21	24	1.97
13569832--13570059	89	2.5	88	81	7	255	39	20	8	31	1.82
13570153--13570251	10	10.4	10	72	10	64	61	1	4	33	1.21
13570145--13570242	19	5.2	19	70	11	76	64	1	4	30	1.19
13570153--13570251	47	2.1	48	83	12	125	61	1	4	33	1.21
13570202--13570290	28	3.0	28	76	15	90	64	1	6	28	1.26
13570516--13570574	30	2.0	30	86	6	84	35	3	0	61	1.13
13570590--13570803	88	2.5	84	81	4	248	32	8	18	40	1.81
13578566--13578736	43	4.0	43	71	15	149	23	16	26	33	1.96
13584020--13584069	25	2.0	25	100	0	100	32	16	8	44	1.76
13584691--13584728	16	2.4	17	82	13	53	31	23	2	42	1.68
13594391--13594483	24	3.9	24	85	0	123	31	25	19	23	1.98
13608456--13608505	25	2.0	26	84	4	66	32	16	0	52	1.44
13616361--13616408	25	1.9	25	100	0	96	37	18	22	20	1.94
13617367--13617639	50	5.5	50	89	0	411	21	30	21	26	1.99
13622210--13622266	30	1.9	30	92	0	96	12	21	36	29	1.90
13644606--13644637	12	2.6	13	90	9	50	25	0	0	75	0.81
13646591--13646806	41	5.3	41	85	0	261	22	20	27	29	1.99
13647138--13647185	15	3.3	15	82	5	62	18	0	35	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13647153--13647222	21	3.3	21	75	13	63	20	0	38	41	1.52
13647195--13647262	36	1.9	35	90	3	109	17	1	39	41	1.59
13647404--13647496	22	4.2	22	75	11	73	20	1	39	38	1.60
13647414--13647487	39	1.9	39	86	2	105	21	1	39	37	1.62
13648249--13648378	40	3.3	40	69	12	133	18	38	3	40	1.66
13648248--13648396	78	1.9	78	94	0	262	19	36	3	40	1.68
13648890--13649242	43	8.3	43	85	3	401	28	29	18	24	1.98
13648890--13649242	85	4.1	85	82	5	358	28	29	18	24	1.98
13648890--13649242	128	2.8	126	82	5	413	28	29	18	24	1.98
13661161--13661357	108	1.8	108	90	2	315	31	8	8	51	1.62
13661405--13661692	96	2.8	99	86	6	375	30	10	11	47	1.72
13662191--13662252	28	2.2	28	85	5	81	33	40	0	25	1.56
13662186--13662252	7	9.6	7	82	6	64	34	40	0	25	1.56
13662205--13662268	14	4.5	15	80	5	62	34	35	0	29	1.58
13662470--13662507	15	2.6	15	87	4	51	39	42	0	18	1.50
13662470--13662532	21	3.0	20	79	9	63	38	42	0	19	1.51
13662049--13662731	282	2.4	280	87	6	917	42	26	2	29	1.69
13662764--13662812	14	3.4	14	82	2	62	38	34	2	24	1.67
13663157--13663275	41	2.9	41	84	0	157	27	31	17	22	1.97
13663317--13663462	40	3.6	41	76	6	147	22	23	19	34	1.97
13663514--13663730	86	2.5	86	83	5	242	33	10	15	40	1.81
13663742--13663826	40	2.1	39	81	10	100	32	5	11	49	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13665399--13665451	29	2.0	24	82	17	61	28	18	18	33	1.95
13667024--13667355	43	7.6	43	77	7	228	22	15	28	32	1.95
13667024--13667356	86	3.8	86	80	7	302	22	15	28	33	1.95
13667213--13667400	92	2.0	92	87	0	268	26	19	23	30	1.98
13668444--13668579	46	3.0	46	78	6	150	29	19	20	30	1.97
13674383--13674595	82	2.6	81	84	2	266	21	30	14	33	1.93
13674383--13674575	41	4.7	41	81	3	219	20	30	14	34	1.93
13676988--13677038	23	2.2	23	89	0	75	27	7	21	43	1.80
13678520--13678799	50	5.6	50	87	1	357	21	31	21	26	1.98
13678520--13678799	99	2.8	100	84	2	341	21	31	21	26	1.98
13678520--13678798	149	1.9	148	85	0	387	21	31	21	26	1.98
13681751--13681801	23	2.2	23	89	6	77	29	9	19	41	1.84
13689758--13690309	138	4.0	138	91	0	863	43	5	9	40	1.61
13689987--13690203	71	3.1	71	62	19	166	47	5	10	37	1.61
13692357--13692408	26	2.0	26	100	0	104	50	15	3	30	1.62
13712982--13713088	50	2.1	51	83	8	130	27	18	25	28	1.98
13716731--13716943	27	7.9	27	84	6	270	39	19	17	22	1.92
13718256--13718433	51	3.5	49	83	3	196	23	15	28	32	1.95
13718357--13718437	26	3.2	26	62	28	64	22	14	29	33	1.94
13723818--13723973	42	3.7	42	77	16	169	30	26	18	24	1.98
13731145--13731300	42	3.7	42	77	16	169	30	26	18	24	1.98
13734664--13734897	51	4.6	52	85	4	275	23	18	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13734660--13734897	100	2.4	99	82	5	282	23	18	27	31	1.97
13734901--13734995	45	2.1	45	86	0	136	26	18	22	32	1.97
13742388--13742622	29	8.0	29	82	3	240	37	13	28	21	1.91
13742461--13742625	87	1.9	88	91	1	269	38	12	27	21	1.90
13743999--13744084	42	2.0	42	93	0	145	22	26	30	20	1.98
13745624--13745670	22	2.1	22	84	7	60	46	19	14	19	1.84
13745682--13745870	32	5.9	33	77	7	151	33	23	21	21	1.97
13745682--13745870	64	3.0	64	76	7	179	33	23	21	21	1.97
13745818--13745893	32	2.4	32	90	0	116	42	25	15	17	1.88
13760163--13760242	15	4.8	15	69	25	54	72	2	20	5	1.15
13760157--13760238	27	3.0	26	75	23	80	69	6	18	6	1.31
13765488--13765540	16	3.2	16	71	12	54	58	1	11	28	1.43
13765491--13765564	36	2.2	32	78	9	76	54	2	16	27	1.56
13770705--13770991	29	9.8	29	78	1	268	39	12	26	22	1.89
13770705--13771002	59	5.1	59	81	2	314	38	13	25	22	1.91
13773848--13773917	25	2.7	26	82	8	90	31	14	27	27	1.95
13776983--13777057	39	1.9	39	86	5	107	32	12	14	41	1.83
13787313--13787361	22	2.2	23	82	10	66	30	8	18	42	1.79
13804025--13804066	20	2.0	21	82	13	52	45	2	4	47	1.36
13807800--13808189	131	3.0	132	86	0	566	26	24	19	29	1.98
13808232--13808460	89	2.6	89	82	0	278	24	21	23	30	1.99
13808232--13808487	89	2.9	89	80	0	224	24	20	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13808437--13808791	143	2.5	143	82	1	399	29	21	18	30	1.97
13808732--13809028	44	6.7	44	74	3	211	25	19	20	33	1.97
13808732--13809028	88	3.4	88	75	3	326	25	19	20	33	1.97
13809358--13809413	24	2.3	24	96	0	103	28	25	12	33	1.92
13811354--13811396	11	3.8	11	78	6	50	0	25	0	74	0.82
13811357--13811402	23	2.0	23	91	0	74	2	30	0	67	1.03
13811428--13811452	8	3.1	8	100	0	50	16	0	0	84	0.63
13814421--13814467	19	2.5	20	86	6	62	44	8	19	27	1.79
13816257--13816289	15	2.1	16	88	5	50	63	0	6	30	1.18
13817115--13817172	22	2.6	22	81	7	64	41	17	5	36	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175