genome.fa.s16.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  107  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34070834--34071188	100	3.6	100	93	0	570	23	23	22	30	1.99
34071006--34071331	149	2.2	150	87	0	474	26	20	22	30	1.98
34071166--34071471	99	3.1	99	83	0	369	26	22	20	30	1.98
34071176--34071468	100	2.9	98	85	2	370	26	21	20	30	1.98
34070917--34071436	249	2.1	248	88	1	765	24	21	22	30	1.99
34071456--34071933	132	3.6	132	89	2	676	26	24	19	29	1.98
34071617--34071933	44	7.2	44	65	19	124	26	25	17	29	1.98
34073200--34073235	9	3.9	9	88	3	54	0	16	0	83	0.65
34073202--34073241	19	2.0	21	90	9	66	0	20	0	80	0.72
34073199--34073243	10	4.4	11	78	21	53	0	24	0	75	0.80
34076919--34077561	109	5.9	109	92	0	1038	34	18	17	29	1.94
34081737--34081771	6	5.8	6	100	0	70	82	0	17	0	0.66
34085729--34085788	17	3.7	17	75	20	65	33	8	3	55	1.47
34088630--34088670	21	2.0	21	85	0	55	34	29	12	24	1.91
34089139--34089235	35	2.8	35	82	0	113	36	37	7	19	1.80
34089877--34089926	7	7.1	7	77	8	57	34	32	12	22	1.90
34089873--34089951	35	2.3	35	84	4	106	32	34	10	22	1.88
34090319--34090503	93	2.0	94	89	3	284	37	7	23	30	1.83
34091111--34091145	15	2.4	15	90	4	54	48	0	8	42	1.33
34091140--34091181	18	2.3	18	84	8	50	35	0	4	59	1.19
34096123--34096178	19	2.9	19	76	10	60	51	7	0	41	1.29
34099962--34100017	27	2.1	27	100	0	112	26	3	17	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34105334--34105375	22	1.9	22	85	9	59	47	47	2	2	1.28
34105843--34105871	14	2.0	15	93	6	51	62	0	13	24	1.32
34106226--34106282	16	3.6	16	95	0	87	29	0	36	33	1.58
34106401--34106454	27	2.0	27	100	0	108	37	18	14	29	1.91
34106555--34106589	18	2.0	17	88	5	52	54	0	0	45	0.99
34106442--34106755	154	2.0	156	95	1	569	44	3	5	46	1.41
34106689--34106730	15	2.7	16	82	14	52	52	2	0	45	1.13
34106698--34106739	15	2.9	15	82	10	52	52	0	0	47	1.00
34106687--34106983	120	2.5	121	90	6	453	50	5	3	41	1.41
34106808--34106859	15	3.6	15	80	12	56	53	1	0	44	1.11
34106785--34106875	44	2.1	43	81	6	103	53	3	2	40	1.29
34106944--34106982	17	2.5	15	80	15	51	51	0	5	43	1.24
34106949--34106982	17	2.0	17	94	0	59	50	0	5	44	1.26
34107015--34107208	92	2.1	92	88	5	277	46	4	4	44	1.41
34108609--34108635	11	2.5	11	100	0	54	51	18	7	22	1.70
34110875--34110905	15	2.1	15	100	0	62	45	0	19	35	1.51
34114211--34114268	29	2.0	29	83	6	73	34	18	13	32	1.91
34127151--34127191	21	1.9	22	90	5	66	48	0	9	41	1.36
34127523--34127585	26	2.4	27	94	2	110	42	11	0	46	1.39
34128243--34128295	18	3.1	18	81	10	67	41	13	0	45	1.43
34128249--34128298	15	3.1	15	85	8	64	44	14	0	42	1.44
34128306--34128422	19	5.2	23	61	32	56	43	0	16	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34128304--34128475	45	4.0	45	91	5	268	43	1	15	40	1.54
34128342--34128419	26	3.3	26	67	29	82	42	0	15	42	1.47
34128406--34128478	38	1.9	38	100	0	146	41	4	10	43	1.59
34128407--34128467	19	3.3	18	68	8	59	44	3	9	42	1.54
34128421--34128480	19	3.2	18	66	15	50	41	5	10	43	1.60
34129097--34129128	16	1.9	17	93	6	57	12	6	15	65	1.44
34133764--34133817	24	2.2	24	83	0	63	24	22	18	35	1.96
34148125--34148149	13	1.9	13	100	0	50	32	16	8	44	1.76
34148160--34148288	54	2.4	52	81	7	136	34	17	3	44	1.67
34148250--34148279	13	2.3	13	94	0	51	36	20	3	40	1.69
34158038--34158114	37	2.1	37	100	0	154	46	5	14	33	1.66
34161162--34161193	16	2.0	16	93	0	55	25	15	0	59	1.36
34161317--34161415	46	2.2	43	82	8	110	32	26	18	23	1.97
34161421--34161611	51	3.8	50	76	11	201	30	27	16	25	1.96
34167623--34167818	102	1.9	102	89	2	304	38	16	9	35	1.81
34174058--34174092	10	3.2	11	88	12	54	17	37	0	45	1.48
34174075--34174127	22	2.4	22	93	3	88	26	30	0	43	1.55
34175309--34175333	7	3.6	7	100	0	50	28	0	12	60	1.32
34176475--34176544	26	2.7	26	91	2	115	47	1	14	37	1.53
34176539--34176625	23	3.5	23	70	17	75	48	26	0	25	1.52
34176559--34177355	29	31.6	29	69	25	381	45	26	0	27	1.60
34176588--34176661	36	2.1	36	94	0	130	47	27	0	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34176631--34177348	23	29.4	23	73	21	496	44	25	0	28	1.60
34176645--34176705	21	2.8	22	85	9	72	47	22	1	27	1.61
34176624--34177348	73	9.9	72	75	19	425	44	25	0	28	1.60
34176654--34177355	50	14.2	50	73	18	357	44	26	0	28	1.61
34176654--34177355	102	7.1	102	72	21	520	44	26	0	28	1.61
34176770--34176810	21	2.0	21	100	0	82	43	31	0	24	1.54
34177138--34177301	21	7.2	20	71	27	91	45	27	0	27	1.54
34177194--34177307	20	5.1	20	76	22	95	45	28	0	25	1.54
34180488--34180839	126	2.8	125	89	2	537	33	21	15	28	1.94
34181891--34181942	26	2.0	27	81	11	63	38	1	5	53	1.36
34185282--34185431	24	6.2	24	82	3	167	14	36	26	23	1.93
34185282--34185431	72	2.1	72	83	2	185	14	36	26	23	1.93
34185531--34185613	24	3.6	23	70	15	57	14	27	22	34	1.93
34185553--34185613	21	2.7	22	75	10	70	11	24	26	37	1.89
34189417--34189507	31	3.2	27	77	17	85	34	1	2	62	1.14
34192624--34192675	15	3.2	15	73	19	50	44	0	1	53	1.11
34192713--34192743	16	2.0	16	93	6	55	38	0	0	61	0.96
34192768--34192811	22	2.0	22	90	0	70	45	0	0	54	0.99
34192653--34192814	72	2.2	76	80	9	174	48	0	2	48	1.19
34193448--34194149	228	3.1	225	81	7	609	31	19	21	27	1.97
34193791--34194149	115	3.1	115	89	0	574	29	18	21	29	1.97
34194512--34194566	7	7.7	7	77	4	56	12	0	43	43	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34194512--34194567	22	2.6	21	85	2	76	14	0	42	42	1.45
34195722--34195812	45	2.0	45	86	0	128	23	29	8	38	1.85
34197840--34197984	78	1.9	78	86	2	211	43	17	25	13	1.86
34198323--34198409	42	2.0	42	86	6	122	28	19	22	28	1.98
34198323--34198460	43	3.2	43	80	8	131	27	21	22	28	1.99
34198382--34198693	43	7.3	42	87	3	369	25	21	20	32	1.98
34198339--34198693	85	4.2	84	81	7	341	25	21	20	31	1.98
34198339--34198693	42	8.4	42	85	5	373	25	21	20	31	1.98
34198425--34198693	127	2.1	127	89	2	405	25	20	21	32	1.98
34204315--34204437	65	1.9	65	93	0	210	55	1	6	36	1.36
34204904--34204963	29	2.0	29	83	6	75	50	0	0	50	1.00
34204908--34204953	16	3.1	15	78	18	51	47	0	0	52	1.00
34204962--34205003	17	2.4	18	80	11	52	52	2	0	45	1.13
34207039--34207079	17	2.4	18	84	8	50	56	14	4	24	1.58
34214310--34214507	41	4.8	41	83	3	220	23	28	18	29	1.98
34219774--34219816	19	2.3	19	80	4	52	74	0	16	9	1.06
34225568--34225759	42	4.6	41	80	10	201	39	18	19	22	1.93
34229441--34229473	8	4.2	8	84	7	50	75	0	21	3	0.93
34229440--34229470	15	2.1	15	93	0	53	77	0	19	3	0.90
34240574--34240602	15	1.9	15	100	0	58	27	27	13	31	1.94
34242909--34242948	20	2.0	21	85	5	55	27	7	7	57	1.53
34244627--34244743	62	1.9	59	84	5	153	42	4	3	49	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34244701--34244743	21	2.1	20	82	4	50	46	4	0	48	1.22
34249223--34249256	17	2.0	17	88	0	50	58	11	8	20	1.59
34249688--34249723	18	2.1	17	89	5	54	19	30	5	44	1.73
34249702--34249755	21	2.5	21	81	3	63	20	33	9	37	1.84
34249697--34249735	18	2.2	18	85	0	51	20	35	5	38	1.75
34255851--34255890	21	1.9	21	85	10	55	15	10	22	52	1.71
34264520--34264664	41	3.5	40	80	1	146	21	22	28	27	1.99
34268426--34268467	13	3.3	13	80	6	50	16	2	30	50	1.58
34268598--34268650	21	2.5	20	76	8	52	20	1	28	49	1.60
34269118--34269356	115	2.1	115	90	1	372	29	18	20	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175