genome.fa.s16.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  145  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44367556--44367679	40	3.1	40	76	9	119	37	23	20	18	1.94
44367722--44367825	38	2.7	40	87	3	149	30	20	22	26	1.98
44367878--44368012	7	19.4	7	74	10	53	22	0	30	46	1.57
44367878--44368012	14	9.7	14	69	10	62	22	0	30	46	1.57
44367885--44367991	42	2.5	42	82	8	137	21	0	28	48	1.56
44367897--44367985	35	2.5	35	85	3	108	23	1	26	48	1.58
44367918--44368012	28	3.4	28	82	4	95	21	1	31	46	1.58
44368404--44368460	20	2.8	21	84	10	66	22	0	38	38	1.55
44368858--44369268	113	3.6	115	83	7	464	23	13	24	38	1.90
44369170--44369363	97	2.0	97	82	6	237	18	13	24	43	1.85
44372060--44372093	17	1.9	18	88	5	52	73	0	0	26	0.83
44372343--44372386	21	2.0	22	86	4	63	43	15	4	36	1.68
44372343--44372399	22	2.6	22	86	2	71	40	17	5	36	1.72
44372378--44372462	18	4.7	19	87	12	135	37	14	11	36	1.82
44372371--44372458	35	2.5	36	85	14	123	36	14	11	37	1.83
44373493--44373601	51	2.2	50	79	11	116	36	4	4	54	1.42
44373574--44373621	25	1.9	25	87	8	71	41	6	0	52	1.27
44373900--44373973	21	3.2	23	69	20	64	40	13	6	39	1.71
44374069--44374100	17	1.9	16	93	6	55	53	21	0	25	1.46
44374099--44374178	13	6.3	13	74	18	71	53	11	0	35	1.37
44374054--44374291	105	2.3	103	77	16	267	50	15	0	32	1.48
44374077--44374272	53	3.7	54	85	11	273	51	15	0	32	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44374255--44374319	34	1.9	33	84	3	85	49	18	1	30	1.57
44386198--44386235	17	2.2	17	86	9	51	39	2	0	57	1.12
44388387--44388435	10	5.1	10	79	18	52	20	2	6	71	1.18
44388387--44388432	19	2.4	18	86	13	58	19	2	4	73	1.10
44390896--44390937	22	1.9	22	90	0	66	7	19	16	57	1.62
44397188--44397247	20	2.9	21	73	16	61	53	10	0	36	1.35
44397585--44397650	21	3.0	21	77	14	60	53	3	7	36	1.45
44399670--44399955	70	4.0	67	72	19	227	31	20	18	28	1.97
44399886--44400196	86	3.8	83	76	13	306	33	20	17	28	1.95
44399970--44400110	71	2.0	71	88	0	210	31	19	19	28	1.97
44399521--44400652	301	3.7	297	82	11	1112	33	20	17	28	1.95
44400246--44400652	71	5.7	71	85	10	505	32	20	16	29	1.95
44400246--44400652	140	2.9	141	83	12	539	32	20	16	29	1.95
44399401--44400638	527	2.4	504	78	13	1236	32	20	17	29	1.95
44401657--44401697	17	2.4	17	83	0	55	2	14	0	82	0.76
44401659--44401688	1	30.0	1	93	0	51	0	3	0	96	0.21
44413320--44413346	3	9.0	3	100	0	54	66	0	0	33	0.92
44414600--44414657	23	2.6	21	86	8	71	15	6	39	37	1.74
44414852--44414999	41	3.6	41	92	0	251	27	20	30	21	1.98
44414852--44415003	82	1.8	83	95	1	279	26	20	30	22	1.98
44421447--44421632	43	4.3	43	80	3	196	32	27	16	23	1.95
44423690--44423774	40	2.1	40	84	4	109	49	14	5	30	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44423850--44424037	86	2.2	85	83	6	252	42	15	9	32	1.79
44424133--44424302	86	2.0	87	82	1	207	45	16	6	31	1.73
44427423--44427483	10	5.8	10	79	14	61	40	4	0	54	1.22
44428392--44428486	7	13.3	7	76	8	66	37	41	1	20	1.59
44429084--44429277	41	4.7	41	77	8	162	29	27	23	19	1.98
44429373--44429449	38	2.0	38	87	5	109	16	23	24	35	1.95
44430426--44430625	78	2.6	76	76	10	194	37	4	16	41	1.69
44431018--44431169	41	3.7	41	90	0	241	28	19	28	23	1.98
44431340--44431435	34	2.7	36	76	15	101	31	9	19	39	1.84
44433432--44433458	14	1.9	14	100	0	54	81	0	7	11	0.87
44454518--44454543	12	2.2	12	100	0	52	34	15	19	30	1.93
44457941--44458013	21	3.5	21	75	7	67	16	24	17	41	1.90
44461446--44461498	25	2.1	25	100	0	106	43	7	11	37	1.69
44472662--44472686	13	1.9	13	100	0	50	40	24	4	32	1.73
44473101--44473130	11	2.7	11	100	0	60	10	36	0	53	1.35
44476356--44476614	33	7.6	33	67	25	130	33	28	19	17	1.95
44476250--44476618	103	3.6	103	94	0	632	31	29	20	18	1.96
44489578--44489615	18	2.1	19	90	5	60	23	18	5	52	1.65
44496504--44496532	14	2.1	14	100	0	58	13	0	20	65	1.26
44500696--44501008	43	7.3	43	89	3	400	27	31	20	21	1.98
44501041--44501076	18	1.9	19	88	5	56	36	0	5	58	1.22
44501914--44502076	43	3.8	43	90	1	238	30	33	17	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44502226--44502293	35	2.0	35	82	8	86	55	1	2	39	1.24
44502772--44502823	23	2.3	23	79	0	59	34	7	30	26	1.85
44507488--44507551	33	1.9	33	87	0	92	32	43	4	18	1.71
44510381--44510426	23	2.0	23	83	4	58	34	0	0	65	0.93
44510914--44510966	21	2.5	20	82	8	61	37	37	0	24	1.56
44510961--44510998	14	2.7	15	88	12	62	42	31	0	26	1.56
44511238--44511385	7	21.0	7	73	9	95	45	33	2	19	1.62
44511239--44511385	21	7.3	20	75	12	106	45	32	2	19	1.62
44511611--44511654	22	2.0	22	90	0	70	34	27	18	20	1.96
44511646--44511928	41	6.9	41	88	1	383	28	30	20	19	1.97
44511646--44511928	81	3.5	82	88	2	392	28	30	20	19	1.97
44511648--44511928	122	2.3	123	87	3	397	29	30	20	19	1.97
44519446--44519510	30	2.2	30	97	0	121	35	23	7	33	1.83
44531574--44531630	24	2.5	23	72	16	57	33	3	17	45	1.65
44535904--44536922	507	2.0	506	99	0	2020	40	16	11	31	1.84
44538449--44538507	10	5.6	10	75	16	57	64	1	1	32	1.13
44538449--44538503	22	2.5	22	85	5	67	67	1	1	29	1.11
44538449--44538505	21	2.7	19	81	13	60	64	1	1	31	1.13
44539448--44539488	21	2.0	21	90	0	64	21	19	29	29	1.98
44541030--44541129	11	9.6	11	70	24	67	59	0	3	38	1.13
44541004--44541129	39	3.1	39	89	8	171	59	0	2	37	1.16
44541037--44541113	9	8.1	9	77	11	64	58	0	1	40	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44541061--44541141	31	2.6	31	75	9	85	60	0	2	37	1.10
44541553--44541593	20	2.0	20	100	0	82	60	0	0	39	0.96
44550297--44550343	24	1.9	25	83	12	62	46	6	4	42	1.48
44552409--44552454	21	2.3	21	81	7	60	52	8	6	32	1.58
44572525--44572591	32	2.1	32	83	5	82	74	5	14	4	1.17
44573265--44573311	24	2.0	24	84	16	62	31	0	17	51	1.46
44573531--44573607	40	1.9	40	83	0	100	29	18	20	31	1.96
44590923--44590994	19	3.8	19	88	0	117	36	13	11	38	1.81
44596510--44596740	46	5.0	46	88	2	347	36	9	24	29	1.87
44599391--44599448	27	2.1	27	96	0	107	44	5	15	34	1.69
44610099--44610179	24	3.4	24	77	13	87	49	0	1	49	1.08
44610115--44610153	11	3.4	11	80	13	51	51	0	2	46	1.14
44610098--44610178	15	5.2	15	71	21	60	48	0	1	50	1.08
44610133--44610171	14	2.5	16	88	12	55	46	0	0	53	1.00
44610481--44610519	3	13.0	3	100	0	78	33	0	0	66	0.92
44610671--44610729	27	2.3	27	83	11	72	38	0	30	30	1.57
44610874--44610969	39	2.5	39	80	6	108	20	23	28	27	1.99
44616791--44616829	3	13.0	3	100	0	78	33	0	0	66	0.92
44616981--44617039	27	2.3	27	83	11	72	38	0	30	30	1.57
44617184--44617279	39	2.5	39	80	6	108	20	23	28	27	1.99
44619173--44619283	41	2.7	41	81	5	134	22	28	18	29	1.98
44621196--44621220	13	1.9	13	100	0	50	68	24	0	8	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44622925--44622966	22	1.9	22	85	9	59	40	0	19	40	1.51
44633282--44633375	9	10.4	9	90	0	134	23	9	24	42	1.84
44634210--44634315	42	2.5	42	84	0	131	33	45	2	18	1.64
44639176--44639220	17	2.6	17	79	6	56	53	0	2	44	1.13
44639267--44639321	25	2.2	25	81	12	60	49	5	1	43	1.36
44641451--44641494	7	6.3	7	94	0	79	43	0	0	56	0.99
44641459--44641504	21	2.2	21	88	0	65	47	2	2	47	1.26
44642209--44642245	16	2.3	16	90	0	56	27	2	16	54	1.56
44643675--44643721	15	3.1	15	78	6	58	59	12	6	21	1.55
44665139--44665176	15	2.4	16	78	8	51	44	7	0	47	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175