genome.fa.s16.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  99  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31559746--31559797	19	2.7	19	82	8	61	34	0	7	57	1.27
31567456--31567527	31	2.4	28	80	10	81	15	5	2	76	1.09
31567465--31567527	31	2.0	31	87	0	90	15	6	3	74	1.15
31568034--31568363	107	3.1	107	86	5	465	32	16	17	33	1.92
31568584--31568617	15	2.3	15	90	10	52	70	5	0	23	1.09
31568741--31568787	19	2.5	19	86	13	62	72	2	4	21	1.12
31569858--31569891	15	2.2	16	94	5	61	0	5	8	85	0.75
31578627--31578666	13	3.1	13	81	0	53	35	20	7	37	1.81
31579735--31579786	26	2.0	26	100	0	104	38	11	30	19	1.87
31583067--31583104	16	2.3	17	90	4	60	50	0	10	39	1.37
31589950--31589983	4	8.8	4	93	6	61	20	0	0	79	0.73
31590588--31590625	6	6.7	6	93	3	53	76	0	23	0	0.79
31590588--31590634	6	7.8	6	90	4	51	74	0	25	0	0.82
31590664--31590784	33	3.7	32	83	7	147	54	5	29	9	1.57
31590664--31590732	17	4.2	15	73	26	52	57	7	26	8	1.54
31602044--31602103	30	2.0	30	90	0	93	28	36	8	26	1.85
31607709--31607760	27	1.9	27	100	0	104	23	3	15	57	1.54
31610914--31610957	16	2.6	17	85	7	63	29	0	4	65	1.12
31611939--31611992	27	2.0	27	85	3	74	50	3	9	37	1.52
31616625--31616671	21	2.2	22	92	3	78	21	38	19	21	1.94
31621237--31621276	14	3.1	13	86	10	55	62	5	0	32	1.17
31624070--31625083	398	2.6	399	92	1	1653	33	16	20	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31631418--31631673	72	3.6	72	99	0	503	42	24	6	27	1.78
31631674--31631726	3	17.7	3	92	7	90	67	0	0	32	0.91
31632560--31633263	352	2.0	352	99	0	1399	24	26	17	31	1.97
31636297--31636480	72	2.6	72	99	0	359	41	23	6	27	1.79
31636481--31636527	3	15.7	3	100	0	94	68	0	0	31	0.90
31642937--31642982	21	2.2	21	92	0	74	52	13	6	28	1.65
31654338--31654399	29	2.2	28	82	8	72	43	0	3	53	1.17
31655917--31655952	14	2.6	14	95	0	63	72	0	11	16	1.12
31656297--31656329	17	1.9	17	88	11	50	60	0	0	39	0.97
31656880--31656919	13	3.2	12	89	3	53	37	2	0	60	1.11
31657694--31657726	17	1.9	17	100	0	66	48	0	9	42	1.35
31663040--31663090	20	2.5	20	77	0	57	47	11	7	33	1.69
31671071--31671122	20	2.6	20	81	0	59	48	11	5	34	1.63
31683266--31683429	87	1.9	87	87	2	242	32	22	17	28	1.96
31688379--31688468	44	2.1	43	87	6	128	28	11	7	52	1.65
31692966--31693015	24	2.1	24	100	0	100	46	4	22	28	1.70
31704731--31704766	17	2.1	17	100	0	72	11	11	11	66	1.45
31705169--31705232	33	1.9	34	87	6	96	43	17	4	34	1.69
31706077--31706175	23	4.5	22	82	12	91	18	8	24	49	1.74
31706103--31706175	23	3.2	23	92	7	114	17	8	24	49	1.74
31710404--31710612	92	2.3	91	86	5	278	45	3	3	46	1.39
31710540--31710587	26	1.9	25	84	16	64	45	0	2	52	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31710702--31710890	61	3.1	59	66	17	154	43	2	6	47	1.42
31710755--31710806	15	3.6	15	80	12	56	44	0	1	53	1.11
31710628--31710927	120	2.5	122	89	7	452	43	3	4	49	1.39
31710884--31710925	15	2.7	16	82	14	52	45	0	2	52	1.13
31710875--31710916	15	2.9	15	82	10	52	47	0	0	52	1.00
31710859--31711169	151	2.0	154	92	3	520	47	4	3	44	1.40
31711022--31711056	18	2.0	17	88	5	52	45	0	0	54	0.99
31711292--31711327	16	2.2	16	100	0	72	38	36	0	25	1.56
31712940--31713117	88	2.0	88	100	0	356	31	22	23	23	1.98
31713464--31713525	18	3.4	18	82	12	83	27	19	3	50	1.63
31720270--31720387	60	2.0	59	96	1	218	37	16	8	37	1.80
31724620--31724774	42	3.7	42	78	10	156	30	23	19	26	1.98
31724620--31724791	85	2.0	85	82	4	204	30	24	18	26	1.97
31730099--31730168	26	2.8	25	84	6	79	34	38	4	22	1.74
31730206--31730245	22	1.9	20	85	10	53	40	37	0	22	1.54
31730336--31730368	14	2.3	15	94	5	59	36	33	0	30	1.58
31730981--31731180	41	4.9	41	83	6	235	31	25	23	20	1.98
31730981--31731167	84	2.3	83	84	4	236	31	25	23	20	1.98
31731235--31731367	40	3.3	40	80	5	128	25	22	18	33	1.96
31736438--31736526	30	3.0	29	83	3	97	29	20	24	25	1.99
31736465--31736549	28	3.0	28	84	3	89	32	20	21	25	1.97
31736665--31736733	26	2.7	26	93	0	120	37	23	21	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31736945--31737004	27	2.2	27	82	5	68	21	16	21	40	1.92
31736953--31737199	27	9.4	27	78	10	217	23	13	17	44	1.85
31736953--31737199	81	3.1	81	82	5	240	23	13	17	44	1.85
31737137--31737177	21	2.0	21	95	0	73	24	17	12	46	1.82
31740781--31741077	50	5.8	50	82	3	319	22	28	21	26	1.99
31749071--31749100	13	2.3	13	100	0	60	20	6	13	60	1.55
31749979--31750288	157	2.0	157	94	0	539	47	5	3	43	1.43
31750418--31750485	16	4.2	16	92	0	109	38	32	0	29	1.58
31753552--31753608	26	2.2	25	79	14	62	56	7	3	33	1.43
31760090--31760123	12	2.9	12	95	4	61	35	0	0	64	0.94
31760228--31760286	30	2.0	30	87	12	86	57	6	5	30	1.46
31766141--31766353	114	1.9	113	86	6	306	23	23	25	26	2.00
31766253--31766424	73	2.3	73	85	3	220	25	23	24	26	2.00
31766141--31766541	188	2.1	186	87	3	565	24	22	26	26	2.00
31766326--31766816	115	4.3	115	87	2	684	26	20	26	26	1.99
31766326--31766810	229	2.1	229	86	2	670	25	21	26	27	1.99
31766905--31766931	14	1.9	14	100	0	54	25	0	37	37	1.57
31767831--31767867	19	2.0	19	89	5	58	72	0	0	27	0.84
31767801--31768012	104	2.0	104	83	6	270	50	12	11	25	1.73
31767723--31768234	255	2.0	252	89	4	771	46	12	13	27	1.79
31768728--31768775	22	2.2	22	100	0	96	20	16	16	45	1.85
31770086--31770168	42	2.0	42	83	9	107	43	3	0	53	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31770140--31770185	20	2.4	19	85	3	56	47	2	0	50	1.13
31770157--31770219	20	3.2	20	81	4	65	44	11	0	44	1.39
31770183--31770485	9	34.9	9	67	16	140	45	18	2	33	1.63
31770170--31770230	20	3.1	20	83	6	72	49	14	0	36	1.44
31770191--31770472	25	11.6	25	71	12	115	46	18	2	32	1.62
31770211--31770482	50	5.4	50	73	15	204	45	18	2	32	1.65
31770245--31770309	34	1.9	34	90	0	103	50	18	0	30	1.47
31770359--31770432	16	4.5	16	67	18	53	45	21	2	29	1.65
31773816--31773913	50	2.0	49	86	6	135	22	20	30	26	1.98
31777482--31777599	57	2.1	57	91	3	193	26	28	12	32	1.93
31781738--31781764	13	2.1	13	100	0	54	29	14	7	48	1.71
31784005--31784046	21	2.0	20	86	4	57	14	7	26	52	1.67
31784343--31784386	22	2.0	22	81	4	52	4	27	2	65	1.23
31794840--31794925	29	3.0	29	76	14	81	41	0	3	54	1.17
31794884--31794931	14	3.1	17	72	22	52	37	0	4	58	1.18
31794876--31794931	29	1.9	29	89	7	87	39	0	3	57	1.16
31801357--31801411	23	2.4	23	77	14	60	58	5	1	34	1.32
31806869--31806984	45	2.6	45	81	0	133	25	16	25	32	1.96
31809289--31809341	23	2.3	23	93	0	88	45	3	9	41	1.54
31809297--31809343	23	2.0	23	100	0	94	44	4	8	42	1.54
31810162--31810192	14	2.2	14	100	0	62	32	12	0	54	1.38
31810515--31810549	18	1.9	18	94	0	61	37	17	37	8	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31810668--31810745	40	2.0	40	86	0	111	14	32	19	34	1.91
31811101--31811160	14	4.4	14	78	4	59	46	35	0	18	1.49
31811109--31811160	7	7.6	7	76	4	52	46	36	0	17	1.48
31811110--31811160	20	2.5	20	80	3	57	47	37	0	15	1.46
31811323--31811369	21	2.2	21	88	0	67	48	36	0	14	1.44
31811331--31811374	14	3.1	14	80	0	52	50	31	0	18	1.47
31811399--31811455	21	2.7	21	78	8	62	47	26	1	24	1.62
31811487--31811709	116	1.9	115	83	1	286	29	22	15	32	1.95
31811793--31811902	40	2.8	40	77	10	116	26	24	20	28	1.99
31811548--31812056	151	3.3	154	82	5	584	28	23	16	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175