genome.fa.s16.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  77  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23502361--23502400	15	2.9	14	92	7	64	55	0	2	42	1.13
23506462--23506620	25	6.4	25	82	4	169	28	22	19	28	1.98
23520967--23521104	48	2.8	49	79	11	138	28	15	23	31	1.95
23530529--23530797	50	5.3	50	86	2	295	22	27	21	28	1.99
23530508--23530753	100	2.5	100	86	0	330	22	28	21	27	1.99
23533432--23533530	28	3.5	28	84	4	110	27	15	26	31	1.95
23540568--23540813	50	4.8	50	80	3	195	23	28	21	26	1.99
23544327--23544920	47	12.6	47	90	5	930	29	29	8	32	1.87
23544327--23544920	233	2.5	234	91	3	944	29	29	8	32	1.87
23544795--23544879	25	3.3	25	64	20	66	31	30	4	32	1.78
23544378--23544920	186	2.9	182	93	4	808	30	28	8	32	1.86
23546408--23546432	13	1.9	13	100	0	50	36	16	16	32	1.90
23548606--23548855	40	6.2	40	88	3	342	28	28	19	24	1.98
23550326--23550971	47	13.6	47	92	2	1051	29	29	8	33	1.86
23550326--23550971	96	6.8	96	94	1	1081	29	29	8	33	1.86
23550326--23550971	143	4.5	143	92	3	1063	29	29	8	33	1.86
23550685--23550760	22	3.3	22	64	10	62	27	30	11	30	1.92
23552463--23552487	13	1.9	13	100	0	50	36	16	16	32	1.90
23554148--23554187	16	2.5	16	100	0	80	50	0	5	45	1.23
23562699--23562765	33	1.9	33	82	8	80	46	10	31	11	1.75
23577877--23577913	12	3.1	12	92	7	58	37	24	13	24	1.91
23587474--23587524	25	2.0	25	88	7	77	33	23	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23587490--23587537	25	1.9	25	86	0	69	41	20	8	29	1.81
23600601--23600745	37	3.9	37	91	0	218	25	29	19	25	1.98
23600954--23601389	47	9.1	47	88	5	620	26	30	12	31	1.92
23600977--23601367	194	2.0	195	92	2	649	26	29	12	31	1.92
23600954--23601389	147	3.0	145	92	2	709	26	30	12	31	1.92
23603578--23603756	85	2.1	85	98	0	349	26	27	8	37	1.85
23618321--23618368	21	2.3	21	82	7	53	33	4	16	45	1.67
23623109--23623296	51	3.7	50	81	6	209	30	27	16	25	1.97
23630629--23630674	22	2.1	22	84	15	60	41	4	0	54	1.20
23630640--23630672	16	2.1	16	88	11	50	42	3	0	54	1.15
23646888--23646943	30	1.9	30	85	3	78	17	25	0	57	1.41
23647946--23647995	11	4.6	11	97	2	93	14	0	8	78	0.97
23651919--23652107	30	6.4	30	75	6	145	40	14	24	20	1.89
23651890--23652139	119	2.1	119	86	0	338	38	14	25	22	1.91
23653998--23654264	40	6.7	40	94	0	462	21	28	20	29	1.98
23678544--23678602	22	2.7	22	91	0	91	22	33	16	27	1.95
23681011--23681048	20	1.9	20	88	0	58	31	15	5	47	1.68
23684191--23684376	50	3.6	50	76	7	133	28	20	26	24	1.99
23686429--23686666	28	8.5	28	97	0	424	25	12	28	33	1.92
23694749--23694986	28	8.5	28	97	0	424	25	12	28	33	1.92
23698902--23698960	30	2.0	30	83	6	75	49	11	5	33	1.62
23702202--23702346	50	2.9	50	89	4	204	24	24	31	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23702209--23702443	50	4.7	50	77	8	176	26	23	28	21	1.99
23715905--23715950	12	3.9	12	94	5	85	73	8	0	17	1.07
23715909--23715950	11	3.7	11	93	6	75	78	7	0	14	0.95
23715905--23715950	23	2.0	23	100	0	92	73	8	0	17	1.07
23719924--23720063	50	2.8	48	81	4	136	27	24	26	21	1.99
23720325--23720363	20	2.0	20	89	0	60	58	5	17	17	1.56
23736689--23736749	18	3.3	18	68	4	59	26	4	8	60	1.45
23736689--23736759	22	3.5	22	71	25	84	26	5	7	60	1.45
23736686--23736759	37	2.0	37	97	0	139	25	5	6	62	1.42
23739413--23739466	20	2.7	20	94	2	90	12	22	25	38	1.90
23746172--23747027	431	2.0	431	92	0	1426	21	19	21	36	1.95
23749768--23749824	21	2.6	22	78	13	64	40	28	7	24	1.81
23750657--23750702	23	2.0	23	100	0	92	21	30	13	34	1.91
23760499--23760631	28	4.8	28	87	0	176	26	25	12	35	1.92
23765725--23765779	20	2.8	20	80	0	65	52	10	5	30	1.59
23781698--23781743	20	2.4	19	88	3	65	17	4	2	76	1.06
23783732--23783800	29	2.4	29	92	0	111	47	11	8	31	1.70
23784262--23784288	14	1.9	14	100	0	54	33	22	14	29	1.94
23784466--23784520	20	2.8	20	80	0	65	52	10	5	30	1.59
23788413--23788597	40	4.7	40	82	6	216	24	22	28	25	1.99
23788466--23788630	79	2.1	79	82	6	192	26	20	27	25	1.99
23796403--23796586	40	4.6	39	78	9	194	24	22	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23796455--23796619	79	2.1	79	83	6	201	26	21	27	24	2.00
23798189--23798227	20	2.0	20	90	10	62	15	23	5	56	1.59
23798178--23798228	12	4.2	12	78	9	50	17	21	3	56	1.57
23813461--23813538	1	78.0	1	94	0	138	97	1	0	1	0.20
23813460--23813542	39	2.1	40	97	2	159	95	1	0	3	0.32
23813461--23813542	40	2.0	40	97	0	155	96	1	0	2	0.26
23826772--23826820	21	2.3	21	83	10	64	18	4	2	75	1.06
23826772--23826825	22	2.5	22	81	6	65	16	3	3	75	1.08
23828824--23828892	29	2.4	29	92	0	111	47	11	8	31	1.70
23829355--23829381	14	1.9	14	100	0	54	33	22	14	29	1.94
23829559--23829613	20	2.8	20	80	0	65	52	10	5	30	1.59
23833507--23833691	40	4.7	40	82	6	216	24	22	28	25	1.99
23833560--23833724	79	2.1	79	82	6	192	26	20	27	25	1.99
23841450--23841631	38	4.6	39	79	8	176	24	21	28	25	1.99
23841497--23841664	77	2.2	77	82	10	191	26	20	27	25	1.99
23843232--23843270	20	2.0	20	90	10	62	15	23	5	56	1.59
23843221--23843271	12	4.2	12	78	9	50	17	21	3	56	1.57
23862438--23862570	43	3.2	42	77	7	144	35	25	17	21	1.95
23862506--23862635	64	2.0	64	90	0	206	36	20	20	23	1.95
23862572--23862726	42	3.7	41	80	12	163	36	23	16	23	1.94
23862430--23862712	148	1.9	148	91	1	460	35	23	18	23	1.96
23862570--23862728	84	1.9	84	88	0	237	36	24	15	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23862707--23862780	26	2.8	26	95	0	130	29	33	18	17	1.94
23865883--23865964	42	2.0	42	87	4	121	31	24	13	30	1.93
23868477--23868714	85	2.8	85	87	1	345	36	25	15	22	1.94
23868485--23868711	43	5.4	42	76	11	214	37	25	14	22	1.92
23868688--23868740	26	2.0	26	96	0	97	28	33	18	18	1.95
23886565--23886607	14	2.9	15	76	16	54	34	2	11	51	1.51
23889526--23889620	20	4.7	21	83	5	108	10	33	20	35	1.87
23889526--23889639	40	2.9	40	84	6	126	11	35	20	33	1.88
23889522--23889647	60	2.1	59	88	4	182	11	33	20	34	1.88
23889566--23889687	40	3.1	39	80	10	113	12	33	21	32	1.90
23891100--23891333	69	3.4	68	81	4	263	38	22	22	17	1.94
23894864--23894890	14	1.9	14	100	0	54	29	14	22	33	1.94
23899492--23899539	21	2.3	20	82	13	53	37	0	4	58	1.18
23899926--23900032	25	4.4	25	81	11	134	37	2	8	51	1.47
23899926--23900047	25	5.0	24	79	13	119	37	2	9	50	1.47
23900483--23900718	90	2.6	89	80	8	235	38	19	8	33	1.81
23900727--23900785	9	6.4	9	75	14	50	69	1	3	25	1.13
23900729--23900787	27	2.2	26	82	11	75	66	1	3	28	1.18
23900748--23900786	17	2.3	16	83	12	51	69	0	2	28	1.02
23901031--23901099	27	2.4	30	81	11	92	36	4	0	59	1.17
23901052--23901118	19	3.5	19	74	10	57	29	2	0	67	1.06
23902185--23902246	23	2.7	23	87	7	83	48	1	1	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23902191--23902246	22	2.5	22	88	8	78	51	1	1	44	1.22
23902220--23902258	16	2.4	16	91	0	60	48	2	7	41	1.45
23902334--23902395	9	7.1	9	90	7	101	33	0	11	54	1.36
23902331--23902395	25	2.5	25	85	5	94	35	0	10	53	1.36
23902377--23902527	68	2.2	69	92	3	259	37	4	8	49	1.54
23902506--23902537	14	2.3	14	100	0	64	25	0	0	75	0.81
23925490--23925546	21	2.7	20	77	20	53	7	19	1	71	1.17
23925532--23925575	20	2.2	20	84	11	56	9	18	2	70	1.24
23929699--23929727	4	7.2	4	100	0	58	75	0	0	24	0.80
23943417--23943462	22	2.1	22	100	0	92	41	17	4	36	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175