genome.fa.s16.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  61  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17909987--17910038	24	2.2	24	92	0	86	1	21	32	44	1.63
17910294--17910339	18	2.6	18	82	0	56	39	8	30	21	1.84
17910984--17911015	7	4.6	7	100	0	64	59	12	0	28	1.34
17912095--17912158	30	2.1	31	94	2	112	65	0	0	34	0.93
17912164--17912213	21	2.3	22	93	6	93	40	0	32	28	1.57
17912304--17912367	30	2.1	31	94	2	112	65	0	0	34	0.93
17912373--17912422	21	2.3	22	93	6	93	40	0	32	28	1.57
17912069--17912488	209	2.0	209	100	0	840	45	2	21	30	1.64
17930329--17930355	11	2.5	11	100	0	54	22	7	18	51	1.70
17931761--17931968	91	2.3	91	93	0	344	46	3	4	46	1.39
17931883--17931943	28	2.2	28	85	5	81	45	0	3	50	1.17
17931801--17931943	44	3.2	43	69	20	121	46	2	3	48	1.31
17931958--17932035	28	3.0	25	74	22	70	44	0	1	53	1.08
17931998--17932423	66	7.1	58	66	22	213	41	3	5	50	1.40
17931987--17932521	120	4.4	120	94	1	905	42	2	5	49	1.39
17932105--17932139	18	2.0	17	88	5	52	45	0	0	54	0.99
17932478--17932519	15	2.7	16	82	14	52	45	0	2	52	1.13
17932469--17932510	15	2.9	15	82	10	52	47	0	0	52	1.00
17933200--17933244	21	2.1	21	95	0	81	15	28	4	51	1.63
17934720--17934770	19	2.7	19	84	6	68	47	0	1	50	1.12
17935967--17935998	3	10.7	3	93	0	55	68	0	31	0	0.90
17938320--17938380	16	3.7	17	70	14	56	55	0	1	42	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17938325--17938440	59	1.9	59	86	8	164	55	1	2	40	1.24
17946586--17946610	13	1.9	13	100	0	50	28	32	32	8	1.86
17950646--17950742	22	4.4	21	77	5	95	20	25	17	36	1.94
17950646--17950742	44	2.2	44	80	10	119	20	25	17	36	1.94
17950733--17950784	22	2.3	23	84	12	72	26	28	13	30	1.94
17956603--17956634	16	2.0	16	93	0	55	31	0	9	59	1.29
17956990--17957037	18	2.5	20	80	13	64	25	4	2	68	1.18
17960054--17960132	37	2.1	37	88	0	113	24	32	18	24	1.97
17960251--17960721	47	9.9	47	92	2	755	28	30	9	32	1.88
17960251--17960990	94	8.0	94	81	12	877	28	30	9	32	1.88
17960691--17960750	29	2.1	29	100	0	120	28	33	6	31	1.83
17960720--17960990	49	5.6	49	96	2	496	28	29	9	32	1.89
17960720--17960990	96	2.8	97	96	2	494	28	29	9	32	1.89
17960720--17960990	145	1.9	145	99	0	533	28	29	9	32	1.89
17964491--17964567	29	2.7	29	90	6	122	45	10	0	44	1.38
17964640--17964706	27	2.5	27	95	0	116	28	29	26	14	1.96
17964753--17964884	22	5.6	23	78	12	126	65	0	34	0	0.93
17964751--17964909	40	3.9	40	80	14	166	66	0	33	0	0.92
17964750--17964927	40	4.3	43	78	12	155	65	0	34	0	0.93
17964750--17964883	18	6.6	20	72	25	104	65	0	34	0	0.93
17964753--17964930	22	8.6	21	74	19	103	65	0	34	0	0.93
17964820--17964912	23	4.3	23	69	20	74	69	0	30	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17964947--17964984	19	2.0	19	85	10	51	31	0	7	60	1.25
17967104--17967133	13	2.3	13	100	0	60	23	10	16	50	1.75
17969313--17969347	3	11.7	3	100	0	70	68	31	0	0	0.90
17969423--17969461	20	2.0	21	85	10	55	66	7	0	25	1.18
17969522--17969570	24	2.0	24	92	4	80	10	16	6	67	1.39
17969600--17969702	27	3.8	27	86	0	134	18	28	27	26	1.98
17969761--17969864	29	3.6	28	86	11	149	48	0	10	41	1.38
17970084--17970127	17	2.8	17	86	13	67	50	0	0	50	1.00
17970183--17970347	75	2.2	75	95	2	298	31	9	10	48	1.69
17982511--17982841	165	2.0	165	100	0	662	27	15	12	44	1.82
17984189--17984241	21	2.5	21	84	6	63	32	1	1	64	1.15
17995562--17995635	5	14.8	5	81	5	87	36	5	21	36	1.77
17995892--17995946	19	2.8	19	81	13	58	9	5	27	58	1.51
17998366--17998604	50	4.7	50	81	5	241	27	21	28	23	1.99
18004200--18004244	21	2.1	21	84	8	56	35	20	22	22	1.96
18005918--18006107	50	3.7	51	83	5	231	26	22	28	22	1.99
18005918--18006149	50	4.5	50	82	3	223	27	21	27	23	1.99
18005921--18006107	100	1.8	103	85	6	263	26	22	28	22	1.99
18028929--18029016	38	2.3	38	80	0	104	27	7	27	37	1.84
18030800--18030997	60	3.3	61	78	5	172	30	15	25	27	1.96
18033725--18033751	5	5.4	5	100	0	54	40	0	18	40	1.51
18037215--18037262	19	2.5	19	82	0	69	16	27	29	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18037215--18037275	19	3.2	19	77	9	61	14	24	31	29	1.95
18043475--18043527	3	17.7	3	92	0	88	71	0	28	0	0.86
18053493--18053565	17	4.3	17	73	0	65	15	27	28	28	1.96
18067438--18067534	20	4.8	20	75	5	97	9	29	23	37	1.86
18069420--18069605	57	3.3	57	80	6	146	45	17	10	25	1.81
18071279--18071309	15	2.1	15	93	0	53	25	32	3	38	1.72
18075625--18075655	15	2.1	15	93	0	53	25	32	3	38	1.72
18084222--18084275	25	2.2	25	100	0	108	37	16	3	42	1.66
18102094--18102141	21	2.3	21	88	0	69	37	6	31	25	1.81
18104997--18105043	24	1.9	25	91	4	78	42	6	4	46	1.48
18107493--18107554	23	2.5	24	87	7	81	19	9	19	51	1.74
18121689--18121725	17	2.1	18	85	14	51	24	2	2	70	1.14
18127727--18127753	14	1.9	14	100	0	54	29	0	14	55	1.40
18128691--18128760	36	1.9	36	97	0	131	37	10	8	44	1.69
18131757--18131806	23	2.2	23	96	0	91	36	0	10	54	1.34
18132028--18132356	162	2.0	162	97	0	622	33	20	10	35	1.88
18139948--18139989	22	1.9	22	95	0	75	45	2	4	47	1.36
18140840--18140895	17	3.6	16	81	11	71	48	0	0	51	1.00
18151985--18152032	9	4.9	9	80	14	51	29	0	16	54	1.43
18154281--18154339	24	2.5	24	85	0	82	35	16	3	44	1.65
18159854--18160043	41	4.6	41	92	2	319	28	20	26	24	1.99
18159854--18160042	81	2.3	82	94	1	326	28	20	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18167471--18167661	41	4.6	41	90	0	301	27	19	27	25	1.99
18168577--18168682	50	2.1	50	82	0	122	27	21	32	18	1.97
18175409--18175447	17	2.3	17	86	8	53	12	23	7	56	1.62
18182620--18182652	14	2.4	14	94	0	57	6	21	3	69	1.24
18196347--18196402	6	9.3	6	79	14	62	78	3	1	16	0.97
18196364--18196407	17	2.7	16	82	10	54	75	4	0	20	0.98
18196364--18196406	23	1.9	22	90	4	68	76	2	0	20	0.89
18200970--18201461	50	9.8	50	77	5	417	27	21	27	23	1.99
18201042--18201528	244	2.0	244	95	0	884	28	20	26	23	1.99
18206188--18206292	40	2.7	40	79	10	126	35	21	20	21	1.96
18206378--18206635	41	6.4	41	80	6	274	24	18	26	31	1.98
18206357--18206635	123	2.3	120	82	4	337	23	17	26	31	1.97
18206719--18206773	25	2.2	26	78	9	62	61	7	9	21	1.50
18206993--18207026	7	4.7	7	88	3	50	26	0	32	41	1.56
18207014--18207061	21	2.3	22	82	10	64	25	0	39	35	1.56
18207056--18207103	22	2.2	22	85	14	64	27	0	39	33	1.57
18207362--18207402	21	2.0	20	85	4	55	19	0	41	39	1.52
18207358--18207467	35	3.2	32	74	14	94	21	1	40	36	1.64
18207394--18207424	7	4.4	7	91	0	53	19	0	48	32	1.49
18207394--18207434	21	2.0	21	90	0	64	21	0	46	31	1.52
18207370--18207444	21	3.5	20	80	7	60	21	0	42	36	1.53
18207618--18207652	18	1.9	18	88	0	52	31	0	20	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18207849--18207899	24	2.1	24	96	0	93	47	3	1	47	1.32
18210428--18210488	28	2.2	28	85	5	79	32	9	24	32	1.88
18212157--18212442	43	6.7	44	78	7	243	25	17	29	27	1.98
18212946--18212981	8	4.5	8	100	0	72	33	0	0	66	0.92
18212998--18213051	18	2.8	19	86	5	65	27	1	3	66	1.19
18226832--18226914	41	2.0	41	88	4	123	51	12	6	30	1.62
18226952--18226989	19	2.0	19	94	0	67	42	18	5	34	1.73
18227544--18227594	24	2.1	24	92	0	84	25	27	17	29	1.98
18230736--18230817	41	2.0	41	97	0	155	48	15	6	29	1.69
18238750--18238783	16	2.0	18	88	11	54	64	2	5	26	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175