genome.fa.s16.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  170  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51056626--51056672	19	2.6	18	87	12	62	65	0	34	0	0.93
51056635--51056677	17	2.5	17	82	17	54	65	0	34	0	0.93
51056732--51056792	3	21.0	3	77	15	58	68	0	31	0	0.89
51056735--51056763	10	2.9	10	100	0	58	62	0	37	0	0.96
51056732--51056774	13	3.5	13	82	17	56	62	0	37	0	0.95
51057039--51057091	20	2.8	19	76	15	56	83	1	15	0	0.74
51057039--51057094	11	5.0	11	82	4	67	82	1	16	0	0.76
51057220--51057279	6	10.2	6	82	12	63	30	0	1	68	0.99
51057419--51057498	17	4.6	17	73	16	58	33	16	6	43	1.73
51057419--51057463	18	2.6	18	82	3	56	35	17	4	42	1.70
51057452--51057804	18	19.6	17	69	19	130	34	12	10	42	1.77
51057419--51057587	34	4.8	34	72	13	99	33	14	7	44	1.73
51057454--51057587	55	2.5	53	77	16	141	33	12	8	45	1.72
51057437--51057913	17	27.2	18	69	14	218	33	11	10	44	1.75
51057488--51057664	74	2.4	75	82	5	198	37	11	9	41	1.74
51057548--51057628	39	2.1	38	84	4	101	45	11	9	33	1.73
51057601--51057804	35	5.7	34	78	12	169	34	12	11	42	1.78
51057598--51057788	53	3.6	52	75	14	158	34	12	12	40	1.80
51057898--51057950	19	2.7	20	73	8	54	43	7	7	41	1.61
51057938--51057975	16	2.3	17	81	4	51	36	15	10	36	1.82
51061033--51061088	20	2.9	19	92	5	94	76	0	23	0	0.78
51061033--51061102	24	2.9	23	81	12	79	77	0	22	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51061036--51061099	29	2.2	28	76	13	58	75	0	25	0	0.81
51064944--51064999	27	2.0	28	89	3	87	46	0	0	53	1.00
51065199--51065255	30	1.9	29	85	3	78	35	7	7	50	1.56
51069706--51069740	15	2.2	16	90	5	54	25	2	25	45	1.67
51074411--51074476	24	2.9	23	70	18	57	51	0	9	39	1.34
51074411--51074477	23	3.0	22	71	16	57	50	0	8	40	1.34
51075037--51075079	20	2.2	20	100	0	86	62	4	0	32	1.15
51075749--51075799	24	2.1	24	81	0	57	21	11	17	49	1.79
51082332--51082378	24	2.0	24	87	8	69	74	10	8	6	1.22
51085320--51085365	24	1.9	24	86	8	67	60	6	0	32	1.22
51087012--51087051	18	2.1	20	90	9	66	47	0	0	52	1.00
51096026--51096108	31	2.6	31	81	7	87	42	10	1	45	1.47
51098129--51098168	21	1.9	21	89	0	62	27	7	10	55	1.60
51098129--51098178	12	4.4	12	82	14	61	28	8	8	56	1.57
51098207--51098389	93	2.0	93	96	0	339	30	15	23	30	1.96
51110570--51110623	21	2.5	22	77	14	67	50	1	0	48	1.11
51111881--51111939	22	2.7	22	78	7	75	30	16	3	49	1.63
51111881--51111953	20	3.4	21	80	12	69	31	17	4	46	1.67
51112676--51112723	19	2.5	20	80	16	64	25	0	18	56	1.42
51113795--51113838	14	3.1	14	80	6	52	40	38	4	15	1.68
51113776--51113827	7	7.3	7	82	2	50	38	40	5	15	1.71
51118934--51118982	25	2.0	25	84	8	64	20	4	2	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51118972--51119049	32	2.4	33	76	6	88	35	10	1	52	1.44
51121106--51121130	7	3.6	7	100	0	50	60	0	12	28	1.32
51128039--51128272	110	2.1	110	83	1	290	41	16	20	22	1.91
51128071--51128476	204	2.0	201	83	8	502	43	16	16	22	1.87
51131512--51131569	27	2.1	27	83	0	71	29	27	12	31	1.92
51135624--51135675	26	2.0	26	100	0	104	38	19	0	42	1.51
51148537--51148596	31	1.9	31	82	3	75	45	5	10	40	1.60
51151255--51151293	16	2.5	15	88	12	53	53	0	0	46	1.00
51170199--51170436	119	2.0	119	82	4	293	46	11	14	27	1.79
51178197--51178233	19	2.0	20	89	10	60	37	0	8	54	1.30
51189307--51189342	15	2.3	16	85	9	56	55	13	11	19	1.68
51204462--51204534	29	2.5	27	77	20	67	42	12	9	35	1.75
51205305--51205344	21	1.9	21	89	0	62	12	2	27	57	1.48
51209335--51209394	31	1.9	31	90	6	95	36	13	11	38	1.81
51211480--51211560	37	2.2	37	97	0	153	48	12	2	37	1.54
51213797--51213824	7	4.0	7	100	0	56	28	0	0	71	0.86
51217461--51217508	17	2.9	17	73	14	55	50	31	6	12	1.65
51217461--51217527	33	2.1	32	88	8	100	47	26	10	14	1.77
51218960--51219002	22	2.0	22	81	9	52	9	13	13	62	1.53
51220935--51220961	3	9.0	3	100	0	54	33	0	66	0	0.92
51234280--51234336	22	2.6	21	83	10	69	12	1	8	77	1.07
51234414--51234469	19	2.9	19	86	7	78	33	3	1	60	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51240367--51240408	20	2.1	20	100	0	84	52	4	14	28	1.62
51244416--51244447	15	2.1	15	100	0	64	37	31	6	25	1.81
51244606--51244671	27	2.3	29	92	5	109	42	10	0	46	1.38
51245063--51245126	19	3.4	19	78	4	85	35	10	1	51	1.47
51245356--51245414	19	3.2	19	82	4	84	49	0	13	37	1.43
51246058--51246110	27	2.0	26	92	3	88	33	0	9	56	1.32
51276112--51276247	48	3.0	48	72	20	157	33	20	4	41	1.72
51276449--51276517	33	2.1	34	94	2	122	37	5	21	34	1.78
51281375--51281413	19	2.0	20	95	5	71	46	10	15	28	1.78
51312436--51312601	82	2.0	82	98	0	323	41	10	9	37	1.73
51319167--51319259	18	5.2	18	88	0	132	31	15	24	29	1.95
51325501--51325553	27	2.0	26	82	14	63	9	28	1	60	1.38
51329541--51329584	21	2.1	21	100	0	88	34	13	27	25	1.93
51331668--51331700	16	1.9	18	88	11	52	42	9	6	42	1.61
51343670--51343731	25	2.5	24	76	2	70	29	1	8	61	1.34
51343809--51343874	24	2.7	25	76	9	64	39	7	1	51	1.40
51352931--51352978	20	2.3	20	96	3	87	45	4	6	43	1.48
51353711--51353760	17	2.7	20	78	18	70	10	0	44	46	1.37
51358349--51358398	17	2.7	20	78	18	70	10	0	44	46	1.37
51366398--51366431	16	2.1	16	100	0	68	17	23	0	58	1.38
51367667--51367718	18	2.9	18	77	13	54	65	9	0	25	1.23
51367771--51367806	15	2.4	15	95	0	63	61	2	8	27	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51379571--51379620	17	2.7	20	78	18	70	10	0	44	46	1.37
51384210--51384259	17	2.7	20	78	18	70	10	0	44	46	1.37
51389455--51389495	21	2.0	21	90	0	64	19	29	21	29	1.98
51392364--51392435	28	2.6	29	84	8	96	47	12	4	36	1.61
51392381--51392437	28	2.0	28	96	0	105	49	10	3	36	1.55
51395064--51395215	73	2.1	74	93	1	261	23	17	26	33	1.96
51395741--51395788	7	6.6	7	78	7	51	37	2	0	60	1.09
51395728--51395790	21	3.0	22	83	4	76	34	1	0	63	1.04
51397800--51397843	21	2.0	22	82	4	54	43	2	2	52	1.26
51398162--51398390	55	4.2	55	84	1	244	27	10	16	46	1.79
51398174--51398392	110	2.0	110	83	1	278	26	9	16	47	1.77
51398584--51398624	20	2.0	21	90	4	66	21	7	14	56	1.63
51412074--51412120	22	2.1	23	84	4	60	40	0	2	57	1.11
51412436--51412643	55	3.8	55	88	0	290	25	10	17	46	1.80
51413753--51413821	34	2.0	34	82	0	84	26	10	15	47	1.77
51413787--51413977	59	3.3	58	81	5	217	25	7	16	50	1.72
51418307--51418346	14	2.9	14	84	0	53	35	7	15	42	1.75
51418468--51418506	20	2.0	20	94	0	69	48	2	0	48	1.15
51420985--51421041	14	4.3	14	72	20	50	61	3	31	3	1.30
51420995--51421044	25	2.0	25	92	0	82	60	4	32	4	1.34
51421104--51421141	18	2.1	18	95	0	67	44	0	55	0	0.99
51430192--51430286	48	2.0	48	89	0	145	44	22	14	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51430584--51430655	36	2.0	36	91	2	119	31	27	8	31	1.86
51435379--51435470	48	1.9	48	86	0	130	43	20	14	21	1.87
51435771--51435842	36	2.0	36	91	2	119	31	27	8	31	1.86
51443678--51443711	17	2.0	17	94	0	59	44	50	0	5	1.26
51448316--51448349	17	2.0	17	94	0	59	44	50	0	5	1.26
51451490--51451720	55	4.2	55	85	1	284	26	9	17	46	1.78
51455182--51455297	42	2.8	42	93	0	187	16	30	12	41	1.84
51463403--51463530	64	2.0	64	100	0	256	28	7	17	46	1.75
51467457--51467499	21	2.0	21	86	0	59	39	11	27	20	1.88
51467652--51467693	21	2.0	20	86	4	57	57	4	0	38	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175