genome.fa.s16.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  159  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47847553--47848150	23	26.1	23	72	15	413	49	23	0	26	1.54
47847546--47848141	45	13.0	45	75	14	358	48	24	0	26	1.54
47847548--47848149	159	3.8	155	83	9	705	49	23	0	26	1.54
47847900--47848014	52	2.2	52	90	3	178	50	25	0	24	1.50
47847945--47847969	7	3.6	7	100	0	50	48	40	0	12	1.40
47847952--47848141	67	2.8	68	88	4	287	49	26	0	23	1.50
47848144--47848387	116	2.1	116	93	1	409	40	9	6	44	1.62
47850813--47851181	125	3.0	125	91	0	569	34	23	14	28	1.93
47857264--47857886	207	3.0	207	97	0	1174	36	17	23	23	1.95
47865154--47865200	12	4.0	12	78	13	53	51	2	0	46	1.13
47867950--47867986	14	2.7	15	88	12	53	64	0	2	32	1.07
47868795--47868875	10	8.3	10	71	25	59	61	3	0	34	1.14
47868795--47868854	19	3.2	18	81	11	68	61	3	0	35	1.12
47868795--47868875	9	8.3	9	73	18	65	61	3	0	34	1.14
47868795--47868887	10	9.3	10	68	20	52	63	3	1	32	1.17
47868993--47869065	19	3.9	19	76	11	62	61	0	6	31	1.22
47869172--47869209	18	2.1	18	90	0	58	63	0	5	31	1.17
47869579--47869625	16	2.9	16	76	14	51	34	4	4	57	1.38
47869611--47869656	21	2.2	21	84	7	58	28	2	2	67	1.14
47871785--47871817	16	2.0	17	88	5	50	63	0	0	36	0.95
47879880--47879914	17	2.0	18	88	5	54	65	0	5	28	1.15
47880108--47880154	25	1.9	24	95	4	85	63	0	2	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47880389--47880448	28	2.1	29	84	3	77	48	1	1	48	1.21
47880826--47880877	23	2.2	23	86	6	68	55	1	0	42	1.10
47883680--47883717	4	9.5	4	94	0	67	52	21	0	26	1.47
47885152--47885185	18	1.9	17	94	5	59	29	0	8	61	1.26
47885850--47886788	152	6.3	149	85	8	1159	31	9	7	51	1.63
47887484--47887529	20	2.3	20	84	0	56	45	15	10	28	1.79
47890019--47890107	45	1.9	48	86	6	130	52	2	3	41	1.30
47891496--47891552	19	2.8	19	74	12	51	57	1	28	12	1.44
47891745--47891809	24	2.8	23	72	4	67	63	3	13	20	1.43
47891745--47891844	47	2.2	46	87	5	139	62	3	17	18	1.46
47893620--47893775	80	1.9	81	84	3	208	12	16	3	67	1.37
47897371--47897417	3	15.7	3	81	16	53	25	2	2	70	1.10
47897949--47897979	16	1.9	16	93	0	53	35	6	3	54	1.42
47923311--47923640	46	7.6	44	73	12	204	31	21	20	25	1.98
47925269--47925315	3	15.7	3	81	16	53	25	2	2	70	1.10
47925854--47925884	16	1.9	16	93	0	53	35	6	3	54	1.42
47928376--47928415	18	2.2	18	86	8	55	57	5	0	37	1.21
47928996--47929517	242	2.2	240	80	7	583	42	11	13	32	1.79
47932353--47932387	9	3.9	9	92	0	61	42	14	11	31	1.81
47934547--47934677	38	3.3	38	73	10	109	13	16	6	63	1.49
47934510--47934677	81	2.1	82	87	1	239	14	17	5	62	1.49
47934510--47934642	38	3.2	43	74	11	141	13	18	5	63	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47938143--47938238	47	2.0	47	100	0	192	33	12	27	27	1.92
47940003--47940262	98	2.7	97	84	6	314	35	12	15	36	1.85
47941344--47941401	28	2.1	27	93	3	98	29	1	0	68	0.99
47941353--47941412	28	2.1	28	84	6	77	35	3	0	61	1.12
47956392--47956675	33	7.8	34	70	19	198	21	20	26	31	1.98
47956425--47956636	42	5.5	41	72	19	204	22	19	26	31	1.98
47956388--47956673	75	3.8	75	92	0	491	21	20	27	30	1.98
47962757--47962782	6	4.3	6	100	0	52	15	0	0	84	0.62
47963469--47963519	24	2.2	23	82	3	57	52	0	7	39	1.30
47963635--47963659	9	2.8	9	100	0	50	76	0	0	24	0.80
47967144--47967304	33	4.8	32	69	11	108	29	25	14	30	1.95
47967192--47967337	33	4.3	34	68	11	93	29	26	15	29	1.96
47967132--47967371	101	2.4	101	93	0	408	29	25	14	30	1.95
47969292--47969341	11	4.3	11	80	12	55	60	8	0	32	1.26
47969840--47969889	26	1.9	26	87	0	73	28	18	12	42	1.85
47975198--47975222	13	1.9	13	100	0	50	64	0	4	32	1.12
47978667--47978704	17	2.2	17	90	0	58	76	0	2	21	0.91
47984223--47984262	20	2.0	20	90	0	62	50	12	10	27	1.72
47984211--47984277	34	1.9	35	87	3	100	46	11	8	32	1.72
47988045--47988077	11	2.9	12	86	13	52	33	0	0	66	0.92
47988301--47988363	3	21.7	3	79	6	58	68	3	1	26	1.14
48007821--48007864	22	2.0	22	86	4	63	43	2	2	52	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48008746--48008796	16	3.2	16	83	5	68	41	1	27	29	1.67
48008825--48008864	14	2.9	14	84	0	53	32	7	17	42	1.77
48008848--48008887	20	2.0	20	90	0	62	27	10	12	50	1.72
48008833--48008899	34	1.9	35	90	3	109	31	8	13	46	1.74
48008978--48009030	20	2.8	19	86	8	72	43	1	0	54	1.11
48008984--48009025	20	2.1	20	95	0	75	47	0	0	52	1.00
48011941--48011973	14	2.4	14	94	0	57	15	9	60	15	1.58
48015678--48015714	18	2.1	18	100	0	74	5	37	5	51	1.48
48016894--48016931	15	2.5	15	80	12	51	28	2	0	68	1.03
48017132--48017250	19	6.5	19	66	23	67	26	5	2	64	1.29
48018469--48018536	30	2.2	30	81	2	82	42	10	13	33	1.78
48021673--48021900	42	5.3	42	86	3	287	31	19	24	24	1.98
48021692--48021902	85	2.5	85	88	3	291	32	18	24	23	1.97
48022340--48022395	12	4.9	12	76	12	64	1	39	19	39	1.62
48022360--48022424	21	3.1	21	79	0	76	3	40	20	36	1.68
48027848--48028746	9	100.2	9	68	21	243	40	0	13	46	1.46
48027848--48027878	16	1.9	16	100	0	62	32	0	22	45	1.53
48027830--48027907	25	3.1	25	76	20	99	38	0	14	47	1.44
48027962--48028010	16	3.1	16	93	0	89	30	2	24	42	1.66
48027862--48028750	98	8.9	98	78	15	633	40	0	13	46	1.46
48027848--48028746	132	7.0	131	78	13	581	40	0	13	46	1.46
48028156--48028253	41	2.3	43	79	10	112	41	0	14	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48028298--48028330	16	2.1	16	100	0	66	30	0	24	45	1.53
48028297--48028361	25	2.6	25	83	11	80	36	0	16	46	1.48
48028190--48028642	116	4.1	112	81	14	497	39	0	13	46	1.45
48027830--48028768	279	3.4	287	77	15	723	40	0	13	46	1.47
48028454--48028520	22	2.9	22	82	10	64	38	0	10	50	1.37
48028444--48028517	13	5.4	13	68	23	53	39	0	10	50	1.38
48028736--48028777	22	2.0	21	90	4	66	40	2	11	45	1.54
48031046--48031096	24	2.1	24	85	0	66	23	3	43	29	1.72
48031411--48031466	16	3.5	16	80	7	69	23	7	3	66	1.33
48035201--48035284	36	2.4	33	80	9	87	64	9	3	22	1.39
48035958--48035992	7	5.0	7	86	13	54	14	2	42	40	1.60
48035958--48035992	13	2.5	14	90	9	54	14	2	42	40	1.60
48036024--48036141	34	3.5	33	78	6	130	42	0	14	43	1.45
48035998--48036140	68	2.1	67	83	7	175	44	0	13	41	1.44
48036197--48036591	126	3.1	126	88	4	566	36	16	17	29	1.92
48039072--48039128	25	2.3	23	78	18	62	52	5	0	42	1.24
48039529--48039571	18	2.4	18	88	0	59	46	9	23	20	1.79
48041888--48042026	71	2.0	71	94	0	242	29	13	15	41	1.86
48055366--48055424	31	1.9	31	85	0	82	44	10	10	35	1.72
48057772--48057824	6	8.8	6	100	0	106	32	0	67	0	0.91
48058463--48058487	13	1.9	13	100	0	50	40	0	0	60	0.97
48065681--48065738	29	2.0	30	83	12	77	44	6	8	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48080749--48080839	3	30.3	3	76	8	78	29	7	2	60	1.36
48080755--48080839	12	6.8	12	81	7	89	30	8	2	58	1.40
48080966--48081129	86	1.9	87	81	5	197	34	9	2	53	1.47
48083588--48083621	17	1.9	18	88	5	52	2	2	11	82	0.89
48083630--48083661	3	10.7	3	100	0	64	31	0	0	68	0.90
48085449--48085580	30	4.5	29	79	12	128	37	17	4	40	1.70
48085449--48085581	28	4.5	30	80	12	91	36	17	5	40	1.72
48086012--48086060	21	2.4	21	93	3	82	75	0	24	0	0.80
48086198--48086270	12	6.0	12	74	7	67	79	1	19	0	0.81
48086200--48086253	22	2.4	22	84	3	72	79	0	20	0	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175