genome.fa.s16.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  166  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50060206--50060270	27	2.4	27	92	2	114	12	36	23	27	1.90
50065281--50065306	13	2.0	13	100	0	52	53	7	7	30	1.57
50070345--50070386	14	3.1	14	76	13	52	23	2	0	73	0.94
50070345--50070401	13	4.5	13	75	16	57	28	1	0	70	0.98
50075343--50075390	24	2.0	24	91	0	78	29	0	4	66	1.10
50076088--50076153	33	2.0	33	88	5	98	42	24	10	22	1.85
50077386--50077415	15	1.9	16	93	6	53	63	0	0	36	0.95
50080390--50080444	1	55.0	1	100	0	110	100	0	0	0	0.00
50103112--50103521	108	3.8	108	93	1	655	31	20	18	29	1.96
50108648--50108675	14	2.0	14	100	0	56	64	0	28	7	1.20
50108651--50108695	19	2.5	18	82	17	58	66	0	26	6	1.16
50112476--50112538	27	2.3	27	89	5	92	22	33	15	28	1.95
50113772--50113818	24	2.0	24	95	0	85	21	12	23	42	1.87
50116577--50116678	53	1.9	53	86	4	143	30	12	9	47	1.74
50117902--50117937	6	5.8	6	96	3	63	80	0	2	16	0.83
50120379--50120414	2	18.0	2	94	0	63	0	50	2	47	1.15
50120651--50120680	3	10.0	3	100	0	60	0	33	0	66	0.92
50127022--50127064	20	2.2	20	88	8	63	55	9	0	34	1.32
50127896--50128005	43	2.6	42	86	4	159	23	22	21	31	1.98
50128339--50128409	21	3.4	21	82	0	88	4	47	16	30	1.66
50130421--50130495	25	2.9	25	80	11	89	34	2	18	44	1.64
50130423--50130542	34	3.6	33	76	14	113	36	2	20	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50130471--50130554	25	3.5	25	81	10	86	38	1	20	40	1.60
50130532--50130583	13	4.1	13	73	14	54	32	3	19	44	1.69
50130428--50130542	9	13.4	9	74	15	93	36	2	20	40	1.66
50130600--50130651	20	2.6	20	96	0	95	36	0	13	50	1.42
50133848--50133896	7	6.9	7	81	4	53	42	36	2	18	1.62
50133848--50133905	22	2.7	21	78	2	53	44	37	1	15	1.57
50134049--50134114	7	9.6	7	75	3	62	48	34	1	15	1.54
50134041--50134115	14	5.4	14	74	7	64	46	34	1	17	1.56
50134155--50134204	17	3.0	17	94	2	84	50	16	0	34	1.45
50134226--50134576	113	3.1	111	78	7	384	26	23	19	31	1.98
50134362--50134758	188	2.1	188	93	0	668	27	22	17	31	1.97
50134546--50134959	114	3.6	114	79	5	444	27	22	18	31	1.97
50143003--50143045	21	2.1	20	83	12	52	34	0	2	62	1.08
50147186--50147259	30	2.4	31	82	8	80	36	12	10	40	1.78
50153561--50153706	37	4.0	37	92	1	233	24	22	16	36	1.94
50153670--50153788	52	2.2	52	92	2	193	26	23	13	36	1.92
50158567--50158621	19	2.9	18	81	7	56	43	1	0	54	1.10
50161862--50161886	12	2.1	12	100	0	50	20	16	32	32	1.94
50167906--50167976	25	2.7	27	80	4	74	45	0	1	53	1.09
50167929--50167965	19	1.9	19	89	10	58	45	0	0	54	1.00
50168747--50168788	18	2.2	20	87	8	61	59	4	0	35	1.19
50168746--50168789	19	2.2	20	80	11	56	61	4	0	34	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50168746--50168805	20	3.0	20	77	15	54	58	6	0	35	1.24
50168767--50168805	21	1.9	20	89	5	60	58	7	0	33	1.26
50171025--50171073	23	2.1	24	81	11	57	51	0	4	44	1.20
50174218--50174287	25	2.8	26	73	16	67	60	7	0	32	1.24
50178861--50178893	9	3.6	9	92	8	57	87	3	0	9	0.63
50178861--50178893	10	3.4	10	87	4	50	87	3	0	9	0.63
50178890--50179014	29	4.2	29	75	9	110	35	16	6	41	1.74
50178890--50179014	59	2.1	59	85	5	164	35	16	6	41	1.74
50179674--50179748	11	7.6	10	79	14	77	80	0	20	0	0.72
50179674--50179748	21	3.8	21	74	15	79	80	0	20	0	0.72
50179903--50179942	21	1.9	21	89	0	62	30	5	0	65	1.14
50180298--50180604	35	8.7	34	75	11	221	31	13	11	44	1.79
50180359--50180421	20	3.2	20	74	17	60	39	11	9	39	1.73
50180359--50180438	39	2.1	39	81	9	92	38	12	7	41	1.71
50180480--50180506	13	2.1	13	100	0	54	51	0	7	40	1.30
50180298--50180604	18	17.5	16	70	18	154	31	13	11	44	1.79
50187361--50187396	17	2.1	18	89	5	56	50	2	0	47	1.15
50191232--50191272	21	2.0	20	86	9	57	53	4	19	21	1.63
50196004--50196039	17	2.1	18	89	5	56	50	2	0	47	1.15
50200522--50200559	18	2.1	18	90	9	60	60	0	5	34	1.19
50203929--50203968	21	2.0	20	90	9	64	70	0	0	30	0.88
50204265--50204295	15	2.1	15	100	0	62	35	12	6	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50205966--50205996	11	2.8	11	95	0	53	29	3	48	19	1.64
50210044--50210136	18	5.2	18	94	0	150	30	17	24	27	1.97
50210682--50210712	11	2.8	11	95	0	53	29	3	48	19	1.64
50212851--50212895	22	2.1	21	84	8	56	28	15	0	55	1.41
50216938--50216980	21	2.0	22	90	4	70	39	9	0	51	1.34
50216968--50217000	17	1.9	17	88	11	50	24	3	3	69	1.16
50220119--50220273	72	2.2	72	88	2	222	29	28	16	25	1.97
50220119--50220297	72	2.5	72	82	7	204	31	26	16	25	1.97
50221596--50221661	10	6.3	10	76	10	51	68	0	1	30	0.99
50221615--50221683	11	6.4	11	74	14	54	60	0	4	34	1.16
50221590--50221692	42	2.5	41	87	6	154	63	0	2	33	1.10
50221622--50221660	19	2.1	19	85	0	51	61	0	0	38	0.96
50225301--50225349	25	1.9	26	83	4	64	38	2	0	59	1.09
50228661--50228704	16	2.8	15	80	10	52	34	6	0	59	1.24
50230333--50230403	19	3.6	19	76	14	81	36	2	0	60	1.11
50230335--50230431	9	9.7	10	70	21	53	31	3	0	64	1.09
50230384--50230514	11	11.9	11	67	20	69	36	2	0	61	1.09
50230406--50230435	9	3.4	9	95	4	53	16	0	0	83	0.65
50230344--50230465	48	2.5	49	89	7	178	32	3	0	63	1.10
50230372--50230476	48	2.1	49	87	6	151	35	1	0	62	1.06
50230424--50230514	30	3.0	31	88	9	134	37	2	0	60	1.09
50233103--50233148	5	9.4	5	86	13	69	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50239886--50239950	32	2.1	32	97	2	123	47	12	9	30	1.72
50244478--50244580	21	4.7	20	68	16	62	0	10	12	75	1.09
50244479--50244571	9	9.8	9	73	16	64	1	10	12	75	1.11
50245129--50245191	32	2.0	32	96	3	119	49	12	6	31	1.66
50245279--50245324	3	15.3	3	100	0	92	67	0	0	32	0.91
50253562--50253602	21	2.0	21	90	0	64	19	29	21	29	1.98
50264425--50264455	14	2.2	14	94	0	53	51	0	0	48	1.00
50265116--50265170	21	2.8	19	81	13	58	29	1	3	65	1.20
50271678--50271737	24	2.4	25	88	2	86	40	23	16	20	1.91
50272366--50272390	12	2.1	12	100	0	50	68	16	0	16	1.22
50283912--50283973	10	6.6	9	78	9	61	58	1	4	35	1.29
50283897--50283956	19	3.1	20	76	7	61	60	5	5	30	1.40
50283879--50283973	19	5.2	17	71	17	57	57	3	4	34	1.34
50284029--50284076	21	2.3	21	81	0	60	68	2	4	25	1.18
50284539--50284599	19	3.2	19	79	11	63	36	0	3	60	1.13
50284536--50284640	49	2.1	48	81	10	115	34	0	4	60	1.24
50284707--50284742	19	1.9	19	88	5	56	13	8	5	72	1.27
50285770--50285805	17	2.1	17	94	0	63	58	5	13	22	1.56
50290214--50290316	27	3.8	27	87	7	147	20	21	35	22	1.96
50290879--50290974	27	3.7	27	81	13	112	53	12	1	33	1.46
50290906--50290957	22	2.5	20	81	9	61	51	11	1	34	1.49
50290876--50290984	49	2.2	48	91	3	173	54	11	0	33	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50291038--50291092	22	2.6	21	88	2	74	56	9	1	32	1.41
50291013--50291099	21	4.2	22	78	12	85	57	11	1	29	1.41
50291267--50291310	3	15.3	3	81	9	56	2	34	0	63	1.07
50291263--50291311	14	3.6	14	86	10	66	2	34	0	63	1.06
50291267--50291310	20	2.2	20	91	0	70	2	34	0	63	1.07
50291274--50291320	14	3.3	14	91	8	69	0	38	0	61	0.96
50291447--50291512	27	2.4	27	92	0	114	10	37	24	27	1.88
50291964--50292039	27	2.8	27	88	11	120	21	22	35	21	1.96
50292101--50292147	18	2.5	20	79	10	62	63	2	34	0	1.06
50292097--50292150	22	2.4	23	84	12	76	64	1	33	0	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175