genome.fa.s16.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  154  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46508736--46508837	48	2.1	48	81	3	116	59	11	1	26	1.43
46521132--46522011	294	3.0	294	98	0	1679	32	22	10	34	1.88
46524711--46524929	111	2.0	111	82	3	271	34	11	11	42	1.78
46525569--46525593	7	3.6	7	100	0	50	0	12	12	76	1.04
46528990--46529014	5	5.0	5	100	0	50	80	0	20	0	0.72
46529421--46529460	21	1.9	21	84	0	53	15	7	0	77	0.98
46530145--46530170	12	2.2	12	100	0	52	34	7	7	50	1.60
46533730--46533755	7	3.7	7	100	0	52	53	0	0	46	1.00
46536065--46536172	52	2.1	51	93	5	182	30	10	22	37	1.87
46537923--46538008	28	3.1	28	84	1	120	33	23	13	29	1.93
46544935--46544975	19	2.2	18	86	4	55	41	0	9	48	1.36
46546889--46546944	28	2.0	28	92	0	94	62	1	12	23	1.39
46556887--46556935	18	2.5	20	83	9	66	24	0	6	69	1.11
46556888--46556941	14	3.9	13	80	17	56	22	0	5	72	1.05
46556887--46556945	23	2.6	25	80	19	67	23	0	6	69	1.12
46559028--46559091	20	3.2	20	86	2	83	14	37	17	31	1.89
46563772--46563830	29	2.0	29	93	0	100	52	6	6	33	1.54
46565171--46565233	30	2.1	30	82	5	83	31	19	14	34	1.91
46567132--46567347	45	4.8	46	82	3	210	32	22	14	30	1.94
46570475--46570547	29	2.4	30	81	4	76	49	6	12	31	1.67
46576647--46576671	7	3.6	7	100	0	50	56	16	0	28	1.41
46584382--46584430	9	5.4	9	95	0	89	42	22	10	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46584470--46584498	6	4.8	6	100	0	58	17	0	17	65	1.27
46584470--46584511	18	2.2	20	87	8	61	21	0	11	66	1.23
46584539--46584582	18	2.4	18	85	7	54	15	2	40	40	1.60
46584869--46585279	27	15.2	27	81	3	416	44	18	19	17	1.87
46584869--46585281	108	3.8	107	83	4	472	44	18	19	18	1.88
46585651--46585753	28	3.7	28	90	2	154	26	22	24	27	2.00
46587714--46587950	23	10.2	23	75	3	206	40	17	13	28	1.88
46587731--46587952	47	4.8	47	88	2	306	40	17	13	27	1.88
46588030--46588658	311	2.0	311	98	0	1204	39	17	8	33	1.81
46588669--46588783	44	2.7	43	84	9	144	30	29	16	23	1.96
46589096--46589125	15	2.0	15	93	0	51	50	20	0	30	1.49
46593962--46594037	33	2.3	33	83	0	98	36	18	23	21	1.95
46596272--46596330	21	2.8	20	80	14	57	54	3	1	40	1.27
46596312--46596429	11	11.4	11	73	21	87	58	0	4	37	1.18
46596333--46596366	17	2.0	17	88	0	50	61	0	2	35	1.11
46596303--46596429	51	2.5	49	86	10	159	59	0	3	36	1.16
46596297--46596447	40	3.7	40	86	11	200	59	0	3	37	1.14
46596414--46596459	17	2.7	17	82	0	56	63	0	0	36	0.95
46620860--46620899	3	13.3	3	100	0	80	32	0	67	0	0.91
46636682--46636706	6	4.2	6	100	0	50	52	0	0	48	1.00
46637929--46638003	29	2.5	29	82	4	87	46	14	13	25	1.81
46638065--46638128	23	2.7	23	75	17	69	37	0	4	57	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46640335--46640425	21	4.3	21	71	0	65	17	21	17	42	1.89
46640274--46640409	42	3.2	42	76	4	130	19	22	16	42	1.89
46640335--46640425	42	2.2	42	81	0	101	17	21	17	42	1.89
46645142--46645175	14	2.6	14	90	9	54	26	0	5	67	1.13
46645484--46645510	7	3.9	7	100	0	54	0	44	11	44	1.39
46647514--46647553	20	2.1	19	86	13	55	45	0	2	52	1.14
46648247--46648298	6	8.3	6	75	8	50	48	32	0	19	1.49
46648924--46648954	11	2.8	11	90	0	53	67	0	0	32	0.91
46656466--46656516	20	2.5	20	87	6	68	45	17	1	35	1.60
46658416--46658455	13	3.1	13	77	0	53	42	20	5	32	1.73
46659454--46659487	17	1.9	18	88	5	52	23	0	8	67	1.18
46666812--46666850	17	2.4	16	84	16	53	30	0	2	66	1.05
46682149--46682186	18	2.1	18	90	9	60	2	28	0	68	1.03
46682235--46682273	14	2.9	14	88	3	62	25	5	0	69	1.09
46682238--46682277	19	2.2	18	90	4	62	30	2	0	67	1.04
46682254--46682293	21	2.0	21	85	9	57	37	5	0	57	1.21
46683323--46683375	27	2.0	27	84	0	70	58	13	0	28	1.35
46684644--46684838	98	2.0	98	94	0	345	36	24	10	28	1.89
46685890--46685943	19	2.8	19	100	0	108	35	16	11	37	1.84
46686278--46686740	44	10.5	44	65	15	188	29	24	17	28	1.97
46686172--46687090	132	7.0	132	90	2	1382	29	24	17	27	1.97
46686856--46687043	44	4.3	43	65	16	107	28	26	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46688338--46688371	13	2.7	12	86	13	50	2	0	8	88	0.62
46691899--46692093	98	2.0	98	94	0	345	35	25	10	28	1.89
46693150--46693241	19	4.8	19	91	0	157	35	15	10	38	1.82
46693127--46693241	38	2.9	38	88	5	158	38	14	9	37	1.79
46695533--46695608	23	3.3	23	94	0	134	30	25	22	22	1.99
46695834--46695872	18	2.2	17	86	13	53	46	20	0	33	1.51
46697046--46697085	21	1.9	21	89	0	62	25	20	25	30	1.99
46711621--46711659	18	2.2	18	100	0	78	15	17	33	33	1.92
46711727--46711781	26	2.1	26	100	0	110	29	14	27	29	1.95
46720728--46721028	46	6.3	48	84	8	366	35	14	21	28	1.93
46720662--46721017	98	3.6	98	96	0	640	34	14	21	28	1.94
46720992--46721137	37	4.0	37	91	1	233	37	16	21	24	1.93
46726241--46726308	16	4.2	16	90	7	102	27	0	33	38	1.57
46726241--46726308	32	2.1	32	94	0	118	27	0	33	38	1.57
46735705--46735754	16	2.9	17	77	11	57	60	2	0	38	1.09
46735712--46735803	28	3.4	26	80	14	98	60	1	1	36	1.11
46735783--46735868	24	3.8	23	73	21	67	60	3	2	33	1.26
46735770--46735929	10	15.4	10	72	18	87	62	3	2	31	1.24
46735681--46735913	9	24.0	9	68	19	89	60	1	3	35	1.22
46742509--46742555	23	2.0	23	87	8	67	44	2	0	53	1.12
46743045--46743093	22	2.2	22	85	0	71	57	8	14	20	1.63
46744489--46744535	16	2.9	16	81	6	60	40	2	25	31	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46745167--46745195	3	9.7	3	100	0	58	34	0	0	65	0.93
46748911--46748938	6	4.7	6	100	0	56	50	14	0	35	1.43
46750907--46750933	7	3.9	7	100	0	54	29	0	0	70	0.88
46753207--46753241	18	1.9	18	100	0	70	34	2	5	57	1.37
46753246--46753320	23	3.3	23	86	0	96	32	1	16	50	1.53
46753255--46753320	13	5.5	13	71	20	63	31	1	16	50	1.55
46754936--46755532	227	2.6	225	88	3	867	34	16	20	29	1.94
46754931--46755514	114	5.1	113	72	9	499	33	16	20	29	1.94
46755320--46755714	188	2.1	188	91	0	637	31	15	21	30	1.95
46755449--46755588	74	1.9	74	86	7	203	30	18	22	28	1.97
46755449--46755607	74	2.1	74	82	6	196	33	18	20	27	1.96
46755524--46755741	114	1.9	113	79	8	246	31	15	22	29	1.95
46756059--46756157	52	1.9	52	82	0	126	24	1	33	41	1.62
46756126--46756164	7	5.6	7	87	0	60	17	0	48	33	1.48
46756130--46756177	14	3.4	14	88	0	51	22	0	43	33	1.54
46756112--46756163	21	2.5	21	87	0	77	21	0	42	36	1.53
46756223--46756319	7	13.9	7	79	4	88	22	1	46	29	1.59
46756248--46756319	14	5.2	13	87	11	99	22	0	48	29	1.51
46756248--46756343	21	4.7	21	76	15	94	21	0	44	33	1.53
46756286--46756474	95	2.0	96	81	4	220	28	1	29	41	1.65
46756545--46756571	14	1.9	14	100	0	54	48	0	7	44	1.31
46756573--46756613	20	2.0	20	85	0	55	60	4	7	26	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46756608--46756648	18	2.3	18	91	4	66	82	0	4	12	0.81
46757104--46757495	198	2.0	198	89	2	608	28	16	20	33	1.95
46757995--46758019	10	2.5	10	100	0	50	48	12	8	32	1.69
46758818--46758897	7	11.3	7	79	2	88	5	11	12	71	1.29
46759255--46760362	100	11.1	100	96	0	2013	39	7	3	48	1.50
46760051--46760196	47	3.1	41	67	29	112	39	7	3	49	1.48
46760598--46760848	9	28.8	9	70	12	157	45	20	3	31	1.67
46760629--46760821	25	7.4	25	71	13	131	46	18	3	31	1.67
46760755--46760859	25	4.2	25	76	11	106	45	19	2	32	1.65
46766308--46766472	66	2.5	65	84	4	206	40	19	26	13	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175