genome.fa.s16.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  121  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37941098--37941934	88	9.6	88	86	2	943	21	23	24	29	1.99
37941304--37941442	44	3.2	44	64	4	118	24	24	24	26	2.00
37941098--37941934	263	3.2	263	83	2	1013	21	23	24	29	1.99
37943117--37943152	6	5.7	6	87	12	54	13	13	0	72	1.13
37943107--37943155	7	7.3	7	82	17	68	16	16	0	67	1.24
37943116--37943152	13	2.8	13	100	0	74	13	13	0	72	1.11
37943107--37943155	20	2.5	19	90	6	71	16	16	0	67	1.24
37943990--37944034	14	3.1	14	80	6	54	4	17	0	77	0.92
37949497--37949624	64	2.0	64	98	0	247	40	22	15	21	1.91
37951089--37951113	13	1.9	13	100	0	50	64	8	0	28	1.22
37952189--37952263	28	2.6	29	79	10	91	42	9	25	22	1.83
37952153--37952278	29	4.4	27	76	15	101	46	8	23	22	1.79
37952644--37952670	5	5.4	5	100	0	54	18	0	0	81	0.69
37959701--37959799	23	4.3	23	78	5	110	33	23	18	25	1.97
37964404--37964469	25	2.6	25	80	7	71	42	15	13	28	1.85
37970829--37970857	15	2.0	15	93	6	51	41	20	0	37	1.53
37974842--37974879	12	3.2	12	96	0	67	21	39	31	7	1.82
37978390--37978525	24	5.6	24	79	6	123	33	20	26	19	1.97
37978412--37978525	49	2.3	50	81	3	133	33	20	27	19	1.96
37983218--37983281	25	2.6	25	78	14	69	57	1	1	39	1.17
37983790--37983833	23	1.9	23	95	0	79	68	9	11	11	1.40
37987791--37987860	26	2.7	26	75	0	77	20	18	27	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37995346--37995446	26	3.9	26	82	6	116	21	18	23	35	1.96
38018340--38018629	123	2.3	124	94	1	512	28	17	22	31	1.96
38020888--38021055	23	6.9	23	81	15	194	33	0	23	42	1.55
38020888--38021055	45	3.4	46	82	13	194	33	0	23	42	1.55
38020965--38021518	29	19.3	29	90	2	861	30	0	26	42	1.57
38020891--38021501	29	22.2	24	71	26	279	31	0	25	43	1.55
38021522--38021579	26	2.2	25	80	14	64	44	10	3	41	1.55
38023849--38023914	10	6.5	10	73	3	60	65	0	1	33	1.02
38023849--38023914	31	2.2	30	94	2	114	65	0	1	33	1.02
38023855--38023896	21	2.0	21	85	0	57	64	0	0	35	0.94
38023948--38023998	22	2.3	21	87	9	75	35	0	33	31	1.58
38023951--38024049	52	1.9	52	91	0	162	38	0	31	30	1.58
38024003--38024049	22	2.1	22	88	0	67	40	0	31	27	1.57
38029703--38029731	14	2.1	14	100	0	58	34	13	13	37	1.85
38032542--38032585	22	2.0	21	86	4	61	40	6	11	40	1.68
38033435--38033504	35	2.0	35	81	10	81	51	0	4	44	1.21
38033502--38033552	20	2.5	20	80	0	57	47	1	5	45	1.38
38034512--38034748	41	5.8	41	91	3	361	22	21	27	29	1.99
38035283--38035328	14	3.2	14	84	3	56	19	0	45	34	1.51
38035935--38035991	27	2.1	27	100	0	114	57	3	17	21	1.54
38039751--38039944	43	4.5	43	83	2	221	23	13	31	31	1.93
38039751--38039966	86	2.5	86	82	3	240	23	13	31	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38040774--38040825	18	2.7	20	74	17	56	59	0	3	36	1.16
38048363--38048396	16	2.2	15	89	5	50	44	0	0	55	0.99
38049968--38049994	3	9.0	3	100	0	54	66	0	33	0	0.92
38061742--38062004	51	5.2	51	88	5	354	33	15	23	28	1.95
38077579--38077612	17	2.1	16	88	5	50	8	0	17	73	1.08
38085313--38085749	46	9.6	46	93	1	702	33	15	20	30	1.93
38085313--38085730	229	1.8	229	93	2	723	33	15	19	31	1.93
38087010--38087199	49	3.9	48	83	5	213	28	13	24	33	1.93
38087016--38087199	98	1.9	99	84	5	250	28	14	24	32	1.94
38091046--38091556	46	11.1	46	94	0	835	32	15	19	32	1.94
38111078--38111126	26	2.0	24	84	8	62	61	2	0	36	1.08
38122160--38122229	16	4.2	17	71	25	51	50	0	27	22	1.50
38123871--38123926	29	1.9	29	88	0	85	39	5	17	37	1.73
38124881--38124909	14	2.1	14	100	0	58	58	0	0	41	0.98
38126064--38126109	20	2.2	21	92	3	76	63	4	10	21	1.44
38129620--38129692	35	2.1	35	94	5	130	13	26	5	54	1.60
38133325--38133401	29	2.7	27	74	16	68	9	7	14	68	1.37
38141921--38141959	17	2.3	17	100	0	78	28	15	15	41	1.87
38142691--38142745	23	2.4	23	87	3	76	40	16	16	27	1.89
38143024--38143108	42	2.0	42	93	2	143	41	23	8	27	1.83
38172803--38172856	22	2.3	24	78	15	60	35	3	7	53	1.47
38185231--38185282	22	2.5	22	84	12	65	61	1	0	36	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38185235--38185332	21	4.9	20	70	21	55	62	5	0	32	1.17
38185305--38185334	11	2.6	11	94	5	51	73	0	0	26	0.84
38188144--38188187	3	14.7	3	100	0	88	31	0	0	68	0.90
38188875--38188960	44	2.0	44	92	0	145	40	11	17	30	1.85
38189494--38189600	51	2.1	51	98	0	205	37	5	17	39	1.74
38190061--38190098	18	2.1	19	85	5	51	65	2	0	31	1.06
38190049--38190133	23	3.9	22	72	14	61	56	2	0	41	1.12
38196401--38196459	26	2.3	25	80	8	64	45	13	11	28	1.79
38203432--38203480	8	6.0	8	77	13	55	12	14	2	71	1.23
38203428--38203471	17	2.6	17	82	13	56	9	15	2	72	1.19
38203545--38203582	20	1.9	20	88	0	58	34	2	0	63	1.09
38204669--38204718	14	3.7	14	70	20	52	38	14	4	44	1.63
38204674--38204730	26	2.2	26	100	0	114	38	12	7	42	1.70
38223902--38223936	19	1.9	17	88	11	52	20	5	14	60	1.54
38223902--38223942	18	2.2	19	83	12	50	21	7	12	58	1.58
38232073--38232124	24	2.2	24	96	0	95	28	3	46	21	1.69
38237763--38237997	45	5.4	44	82	5	289	26	27	18	27	1.98
38237749--38238056	87	3.5	86	78	7	316	26	25	17	29	1.98
38237763--38238002	132	1.8	132	92	0	408	26	27	18	27	1.98
38239252--38239276	9	2.8	9	100	0	50	8	0	8	84	0.79
38242569--38242613	19	2.3	20	85	7	58	37	11	24	26	1.89
38244237--38244282	11	4.2	11	78	10	58	17	32	2	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38244260--38244358	50	2.0	50	88	6	146	25	26	2	46	1.64
38244235--38244345	11	10.6	10	69	25	54	22	28	1	46	1.62
38248317--38248442	66	1.9	66	98	0	243	18	17	37	26	1.93
38251711--38251768	22	2.6	22	81	7	64	41	17	5	36	1.72
38254478--38254511	17	1.9	18	88	5	52	32	0	8	58	1.29
38254477--38254519	18	2.4	17	80	7	50	30	0	9	60	1.28
38261654--38261682	12	2.3	13	94	5	51	65	6	6	20	1.40
38268194--38268227	17	2.1	17	88	5	52	26	32	0	41	1.56
38272140--38272267	41	3.1	41	75	8	152	19	21	20	38	1.94
38272112--38272307	82	2.4	82	90	1	313	17	22	20	38	1.93
38272155--38272291	41	3.3	41	77	8	152	16	21	20	41	1.90
38272177--38272307	41	3.2	41	74	10	133	18	24	19	37	1.94
38273441--38273479	10	3.7	10	80	12	51	43	0	12	43	1.42
38273441--38273480	12	3.5	12	86	6	57	45	0	12	42	1.42
38273545--38273596	27	1.9	27	88	0	77	40	0	9	50	1.35
38276126--38276196	29	2.4	29	92	0	124	40	12	8	38	1.74
38276443--38277159	9	83.1	9	67	23	83	46	13	2	36	1.59
38276590--38277015	31	13.7	31	76	17	329	47	11	2	38	1.54
38276501--38276807	142	2.2	140	84	9	392	49	12	2	36	1.54
38276731--38276828	22	4.6	22	70	19	91	50	11	3	35	1.54
38276565--38276828	111	2.4	111	82	12	337	49	10	3	37	1.54
38276854--38276905	16	3.1	16	88	5	77	46	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38276756--38277064	163	1.9	165	86	9	441	45	14	2	37	1.57
38277020--38277065	16	2.9	16	100	0	92	45	23	0	30	1.53
38276990--38277226	91	2.6	93	82	6	247	44	16	2	36	1.61
38282627--38282753	66	1.9	66	87	3	184	40	17	25	16	1.90
38282798--38282863	19	3.4	18	73	8	51	34	16	40	7	1.77
38293272--38293464	41	4.7	41	77	6	196	17	21	22	38	1.93
38293270--38293464	82	2.4	82	93	2	331	17	22	22	38	1.93
38294649--38294685	10	3.7	10	92	0	65	43	0	13	43	1.44
38294751--38294802	27	1.9	27	88	0	77	40	0	9	50	1.35
38297311--38297381	29	2.4	29	92	0	124	40	12	8	38	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175