genome.fa.s16.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  150  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45483502--45483616	23	5.0	23	75	12	94	38	5	1	54	1.33
45483511--45483630	45	2.7	43	82	12	118	38	5	1	55	1.32
45483557--45483630	24	3.3	20	72	17	58	39	5	1	54	1.32
45484022--45484058	14	2.8	14	88	8	51	43	0	5	51	1.24
45485334--45485359	12	2.2	12	100	0	52	76	15	7	0	0.99
45485501--45485615	55	2.1	56	84	12	148	41	22	19	16	1.90
45492868--45492920	20	2.7	20	82	2	63	50	0	1	47	1.12
45493304--45493370	31	2.1	32	89	10	102	47	8	5	37	1.59
45496979--45497034	15	3.8	15	76	17	55	28	0	1	69	0.98
45496990--45497036	24	2.0	24	87	8	69	31	0	2	65	1.04
45502404--45502455	15	3.6	15	76	10	63	65	0	1	32	1.04
45502404--45502458	28	2.0	28	92	0	92	65	0	1	32	1.03
45504680--45504714	17	2.0	17	94	5	61	54	0	0	45	0.99
45511702--45511933	95	2.4	99	87	5	339	45	10	10	33	1.73
45517136--45517227	22	4.0	22	76	9	87	39	18	25	17	1.92
45517182--45517263	25	3.3	25	87	0	119	39	19	24	17	1.92
45518208--45518250	5	8.6	5	100	0	86	58	0	0	41	0.98
45525150--45525201	24	2.2	24	89	0	77	55	9	1	32	1.43
45526432--45526526	47	2.0	47	100	0	190	36	16	18	27	1.93
45527165--45527216	24	2.2	24	89	0	77	55	9	1	32	1.43
45537486--45537519	16	2.1	16	88	0	50	55	0	0	44	0.99
45539027--45539092	29	2.3	29	81	0	78	22	16	19	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45540820--45540925	54	2.0	54	92	0	176	27	9	15	48	1.75
45540716--45540996	128	2.2	124	88	3	402	30	12	13	43	1.81
45540876--45541142	76	3.6	76	91	3	418	26	18	14	40	1.89
45544418--45544489	19	3.7	19	85	7	65	61	4	1	33	1.24
45544418--45544501	39	2.2	39	82	8	100	61	3	1	33	1.20
45544439--45544501	19	3.3	19	95	2	108	61	4	0	33	1.17
45547200--45547243	17	2.7	16	86	6	61	79	2	9	9	1.02
45547206--45547241	17	2.1	17	94	0	63	83	0	8	8	0.82
45548074--45548139	30	2.2	31	91	2	107	39	25	13	21	1.90
45548105--45548853	44	16.9	44	78	4	666	29	23	16	30	1.96
45548105--45548779	89	7.6	89	82	5	735	29	23	16	30	1.96
45548105--45548853	266	2.8	265	87	5	1009	29	23	16	30	1.96
45553399--45553433	16	2.2	16	89	0	52	5	2	5	85	0.81
45553921--45553971	3	16.0	3	77	18	50	29	1	5	62	1.29
45553933--45553971	16	2.5	15	88	12	53	30	0	5	64	1.15
45557120--45557177	29	2.0	30	93	3	100	13	6	22	56	1.61
45557120--45557192	30	2.4	29	84	4	74	13	5	23	57	1.57
45557133--45557214	37	2.2	38	84	6	105	13	6	24	56	1.60
45558439--45558547	13	8.2	13	82	4	128	36	4	4	54	1.42
45558428--45558547	27	4.5	26	81	4	105	37	4	5	53	1.42
45558440--45558547	40	2.7	40	91	0	171	37	4	4	53	1.42
45558716--45558846	13	10.2	13	78	9	126	37	3	4	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45558751--45558846	40	2.4	40	91	3	149	36	3	5	55	1.38
45558779--45558878	27	3.7	27	80	5	105	37	4	5	54	1.41
45558298--45558902	299	2.0	299	94	0	1050	37	5	5	51	1.49
45561302--45561327	9	2.9	9	100	0	52	34	19	34	11	1.88
45569898--45570126	116	2.0	116	92	0	386	20	9	19	51	1.74
45579440--45579481	3	14.0	3	89	0	66	33	4	0	61	1.17
45579440--45579497	12	4.8	12	86	0	80	31	10	0	58	1.31
45579440--45579497	6	9.7	6	83	7	55	31	10	0	58	1.31
45579719--45579750	15	2.1	15	94	0	55	18	3	3	75	1.08
45599935--45599986	24	2.2	24	89	0	77	55	9	1	32	1.43
45601907--45601958	24	2.2	24	89	0	77	55	9	1	32	1.43
45602699--45602755	29	1.9	30	85	3	80	36	8	0	54	1.32
45606584--45606608	11	2.3	11	100	0	50	48	8	24	20	1.76
45626172--45626215	18	2.8	17	77	22	51	6	11	4	77	1.11
45627055--45627158	52	2.0	52	84	0	136	43	4	16	35	1.69
45630263--45630322	31	2.0	31	90	3	95	38	10	16	35	1.82
45636420--45636463	23	1.9	23	95	0	79	36	38	0	25	1.56
45636435--45636465	16	1.9	16	93	0	53	35	38	0	25	1.56
45641070--45641096	11	2.5	11	100	0	54	29	0	0	70	0.88
45644756--45644780	5	5.0	5	100	0	50	0	20	0	80	0.72
45646835--45646880	22	2.1	21	84	4	56	17	4	19	58	1.55
45646866--45646949	23	3.7	23	85	0	123	21	7	27	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45651483--45651555	28	2.7	27	68	19	62	41	2	1	54	1.23
45651496--45651730	119	2.0	120	89	5	361	41	3	5	48	1.44
45651623--45651671	15	3.4	15	83	10	59	42	0	2	55	1.11
45651723--45651757	15	2.2	16	90	5	54	48	0	0	51	1.00
45651496--45651761	119	2.2	119	84	7	301	42	3	5	48	1.40
45651892--45651926	16	2.2	16	100	0	70	57	11	0	31	1.34
45651963--45651997	18	2.0	17	88	5	52	45	0	0	54	0.99
45652227--45652262	16	2.2	16	100	0	72	38	36	0	25	1.56
45659436--45659476	21	2.0	21	90	0	64	31	26	9	31	1.89
45660281--45660330	26	1.9	26	83	0	64	52	10	22	16	1.73
45664260--45664359	44	2.2	44	92	1	164	19	19	21	41	1.91
45664339--45664387	6	7.8	6	86	11	64	18	16	16	48	1.81
45669291--45669372	21	3.8	23	79	12	102	37	24	21	15	1.93
45681257--45681289	5	6.8	5	96	3	59	42	0	0	57	0.98
45682419--45682444	5	5.2	5	100	0	52	0	19	0	80	0.71
45684313--45684358	22	2.1	21	84	4	56	17	4	19	58	1.55
45684344--45684427	23	3.7	23	88	0	132	20	7	28	44	1.78
45688524--45688756	119	2.0	118	86	9	332	41	3	6	49	1.44
45688648--45688699	15	3.6	15	80	12	56	44	0	1	53	1.11
45688749--45688783	15	2.2	16	90	5	54	48	0	0	51	1.00
45688911--45688942	16	2.0	16	100	0	64	56	12	0	31	1.37
45688981--45689015	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45689238--45689273	16	2.2	16	100	0	72	38	36	0	25	1.56
45696444--45696484	21	2.0	21	90	0	64	31	26	9	31	1.89
45697301--45697352	27	1.9	27	84	0	68	53	9	21	15	1.70
45701350--45701449	44	2.2	44	92	1	164	19	19	21	41	1.91
45701429--45701477	6	7.8	6	86	11	64	18	16	16	48	1.81
45703687--45703830	33	4.5	33	74	13	138	45	12	22	20	1.84
45703642--45703830	96	2.0	95	84	7	249	45	12	21	20	1.84
45706445--45706526	21	3.8	23	79	12	102	37	24	21	15	1.93
45713075--45713139	20	3.4	18	71	20	60	49	0	0	50	1.00
45713089--45713167	14	5.7	14	72	8	54	46	0	1	51	1.08
45713091--45713168	24	3.5	24	65	22	62	46	0	1	52	1.08
45713080--45713163	41	2.1	40	95	2	150	50	0	1	48	1.08
45718995--45719041	25	1.9	24	95	0	76	31	17	34	17	1.92
45719024--45719141	50	2.4	49	80	18	129	35	18	27	17	1.94
45722476--45722523	20	2.5	20	86	3	62	70	2	2	25	1.09
45722491--45722543	20	2.7	20	85	11	74	69	0	1	28	0.99
45722491--45722542	19	2.7	19	88	8	70	69	0	1	28	0.99
45722862--45722923	32	1.9	31	90	6	88	27	0	0	72	0.85
45722887--45722927	20	2.1	19	90	4	64	31	0	0	68	0.90
45722876--45722923	6	7.7	6	81	9	60	22	0	0	77	0.78
45722876--45722923	13	3.8	12	81	8	60	22	0	0	77	0.78
45724506--45724884	125	3.0	125	91	1	598	30	15	21	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45727971--45728038	17	3.8	17	71	16	57	48	1	5	44	1.36
45728106--45728522	23	18.8	23	81	11	451	26	0	26	47	1.55
45728106--45728525	44	9.5	44	86	5	426	25	0	26	46	1.55
45728106--45728477	67	5.6	67	84	8	426	26	0	26	46	1.55
45728106--45728522	111	3.8	111	90	2	626	26	0	26	47	1.55
45728583--45728630	25	1.9	25	100	0	96	39	14	0	45	1.45
45729671--45729695	7	3.6	7	100	0	50	60	12	0	28	1.32
45731468--45731558	45	2.0	45	97	0	173	37	13	7	41	1.73
45737016--45737077	28	2.2	28	85	5	81	24	11	14	50	1.75
45737198--45737432	126	1.9	125	91	0	389	34	20	14	31	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175