genome.fa.s16.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  153  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46209673--46209710	16	2.4	16	90	0	58	31	0	34	34	1.58
46209689--46209783	45	2.1	44	88	1	136	32	6	27	33	1.82
46209944--46209978	18	2.0	17	88	5	52	54	0	0	45	0.99
46209831--46210145	155	2.0	157	95	1	562	44	3	5	47	1.42
46210082--46210374	120	2.4	121	90	3	450	50	5	2	41	1.40
46210323--46210597	91	2.9	93	83	9	285	50	2	2	44	1.30
46210418--46210488	27	2.7	27	82	6	83	54	2	0	42	1.14
46210390--46210597	91	2.3	91	89	2	301	48	3	2	45	1.34
46210418--46210490	28	2.8	26	77	18	71	53	2	0	43	1.15
46210371--46210557	44	4.1	43	70	16	128	49	2	2	45	1.28
46210422--46210578	47	3.4	47	69	15	137	51	3	1	43	1.28
46212006--46212032	11	2.5	11	100	0	54	51	18	7	22	1.70
46217297--46217357	19	3.4	19	75	13	74	77	3	8	11	1.11
46217393--46217462	28	2.4	29	83	2	88	18	15	8	57	1.64
46218019--46218077	20	3.0	20	82	12	77	71	1	0	27	0.96
46218283--46218329	19	2.4	20	82	10	62	27	2	6	63	1.30
46218532--46218580	21	2.6	18	77	20	55	22	4	2	71	1.13
46218596--46218627	16	2.0	16	93	0	55	25	3	0	71	1.00
46228971--46229082	25	4.5	24	75	11	93	19	27	18	33	1.96
46228969--46229082	50	2.3	49	86	1	156	20	28	18	33	1.96
46240536--46240572	18	2.2	18	85	9	51	45	5	0	48	1.25
46240789--46240839	22	2.3	22	83	6	59	23	9	9	56	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46242673--46242756	42	2.0	42	95	0	150	32	16	17	33	1.93
46244980--46245030	20	2.5	20	80	0	66	60	5	0	33	1.21
46244987--46245038	20	2.6	20	90	6	79	61	5	0	32	1.20
46249559--46249593	19	1.9	18	88	11	54	45	28	8	17	1.77
46250336--46250369	11	3.0	11	95	4	59	35	0	0	64	0.94
46250495--46250553	30	2.0	30	96	0	109	59	8	3	28	1.43
46252943--46252985	6	7.2	6	84	7	52	11	4	2	81	0.93
46253625--46253700	3	25.3	3	77	5	73	27	2	5	64	1.28
46253875--46253909	17	2.1	17	94	0	61	17	2	0	80	0.84
46255119--46255186	33	2.1	33	100	0	136	55	5	16	22	1.62
46255119--46255201	33	2.5	33	90	2	94	54	6	14	25	1.63
46255294--46255342	20	2.5	20	83	6	55	67	0	2	30	1.02
46256975--46257320	173	2.0	173	94	0	611	20	18	18	42	1.90
46258090--46258136	19	2.5	19	86	6	60	25	19	10	44	1.82
46260034--46260089	27	2.1	27	96	0	103	19	16	3	60	1.49
46260883--46261000	51	2.3	48	80	13	130	70	0	1	27	0.97
46260877--46261031	41	3.5	42	74	18	143	65	0	2	31	1.11
46261873--46261963	1	91.0	1	68	0	56	84	0	15	0	0.62
46261876--46261963	9	9.8	9	75	9	74	84	0	15	0	0.63
46261873--46261961	13	6.7	13	82	12	110	84	0	15	0	0.63
46261873--46261963	15	5.8	17	81	12	83	84	0	15	0	0.62
46261873--46261963	42	2.2	42	84	9	123	84	0	15	0	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46263254--46263887	49	12.8	48	68	8	302	30	22	22	23	1.99
46263254--46263929	297	2.3	299	85	4	925	30	22	22	23	1.99
46263254--46263954	100	7.0	100	85	3	887	30	23	22	23	1.99
46263801--46264126	172	1.9	172	80	3	379	29	23	21	26	1.99
46265797--46265869	3	24.3	3	73	5	58	26	2	6	64	1.32
46265797--46265864	12	5.7	12	81	6	75	26	2	5	64	1.30
46266109--46266145	19	1.9	19	88	0	56	24	5	0	70	1.08
46266151--46266185	18	1.9	18	88	0	52	25	17	5	51	1.67
46272720--46272898	45	4.0	45	89	2	245	20	18	19	41	1.90
46273411--46273442	15	2.3	15	89	10	50	40	0	18	40	1.51
46274874--46274939	26	2.5	26	79	11	64	34	22	25	16	1.95
46278952--46279062	24	4.6	24	78	6	125	28	18	25	27	1.98
46279000--46279087	25	3.6	25	76	11	101	31	19	26	22	1.98
46278978--46279089	49	2.3	49	93	3	190	31	20	25	23	1.98
46291038--46291087	12	4.2	12	71	19	50	10	12	28	50	1.71
46291247--46291474	62	3.7	62	80	1	244	27	27	26	18	1.98
46298247--46298477	62	3.7	62	77	2	230	24	25	28	22	1.99
46304192--46304485	69	4.3	69	87	0	392	42	13	16	27	1.86
46304496--46304596	35	2.9	33	81	8	112	44	19	9	25	1.82
46305347--46305443	43	2.3	43	83	3	115	24	26	17	30	1.97
46315365--46315406	21	2.0	21	95	0	75	35	19	26	19	1.95
46328201--46328241	6	7.0	6	88	5	66	65	0	2	31	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46328204--46328237	17	2.0	17	94	0	59	67	0	2	29	1.05
46337164--46337254	44	2.1	44	95	0	164	46	9	12	31	1.74
46373532--46373574	20	2.2	20	87	4	61	46	16	13	23	1.83
46378931--46378973	13	3.5	13	75	18	56	34	2	16	46	1.60
46378931--46378975	23	2.0	23	100	0	90	35	2	17	44	1.62
46394213--46394265	24	2.2	24	86	0	70	54	11	1	32	1.47
46396507--46396581	39	1.9	39	100	0	150	32	21	24	22	1.98
46404699--46404742	23	1.9	23	90	0	70	29	18	25	27	1.98
46405652--46405693	11	3.8	11	87	0	57	7	2	50	40	1.43
46408016--46408127	54	2.1	54	86	0	152	24	29	24	22	1.99
46409891--46409924	17	1.9	17	88	5	50	47	14	5	32	1.69
46414939--46414966	4	7.0	4	100	0	56	25	0	0	75	0.81
46417332--46417370	18	2.2	18	85	0	51	61	2	23	12	1.43
46418769--46418801	4	8.0	4	96	3	57	24	0	0	75	0.80
46422605--46422632	4	7.0	4	100	0	56	25	0	0	75	0.81
46443625--46443682	3	18.7	3	76	13	55	58	5	0	36	1.20
46443629--46443680	27	2.0	26	88	3	77	57	5	0	36	1.23
46444729--46444761	6	5.5	6	92	0	57	84	3	12	0	0.72
46446954--46446994	18	2.3	18	95	0	73	4	43	29	21	1.73
46446954--46447003	18	2.8	18	87	6	57	6	42	30	22	1.77
46446966--46447022	24	2.4	24	81	0	69	12	40	24	22	1.88
46447029--46447063	18	1.9	18	88	11	54	8	40	34	17	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46455726--46455796	7	10.1	7	95	0	115	14	0	9	76	1.03
46460458--46460503	24	1.9	24	90	0	74	26	26	4	43	1.73
46460461--46460514	24	2.2	24	80	0	63	27	25	3	42	1.72
46461265--46461323	28	2.1	27	96	3	109	37	27	16	18	1.93
46465160--46465358	51	4.1	50	86	10	286	29	13	24	32	1.94
46465216--46465365	44	3.2	44	87	6	183	30	13	25	31	1.94
46465656--46465688	11	2.7	13	90	9	52	45	12	6	36	1.66
46466372--46466428	30	1.9	30	85	0	78	40	7	19	33	1.78
46466787--46467060	33	7.5	33	70	20	188	20	19	27	32	1.97
46466820--46467031	42	5.5	42	72	19	226	22	18	26	32	1.97
46466783--46467066	75	3.8	75	94	0	505	21	19	27	31	1.97
46467712--46467751	20	2.0	20	95	0	71	32	15	25	27	1.95
46472081--46472201	43	2.9	42	85	4	154	28	15	27	28	1.96
46472734--46472770	15	2.5	15	95	0	65	18	8	18	54	1.68
46474465--46474757	50	5.8	50	89	0	433	20	30	22	26	1.98
46474852--46474881	13	2.3	13	94	0	51	50	13	3	33	1.58
46482202--46482242	22	2.0	21	86	13	59	39	0	2	58	1.11
46482868--46482946	35	2.4	33	83	10	92	27	1	7	63	1.29
46482955--46483105	10	15.4	9	71	15	79	60	1	4	32	1.28
46482951--46483050	30	3.4	28	77	15	96	59	2	4	35	1.28
46483034--46483105	19	3.7	19	77	7	65	66	1	4	27	1.18
46483419--46483465	19	2.5	18	83	16	60	55	0	8	36	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46483518--46483588	30	2.4	30	83	2	90	57	11	2	28	1.47
46487197--46487298	51	2.0	51	100	0	204	43	17	11	27	1.84
46490058--46490176	40	3.0	40	63	18	93	36	4	10	47	1.58
46490058--46490209	80	1.9	80	91	0	250	36	4	11	47	1.61
46490747--46490802	20	2.9	21	84	10	66	71	3	0	25	1.02
46491183--46491214	3	10.7	3	100	0	64	34	0	0	65	0.93
46493760--46493793	18	1.9	18	88	5	52	29	2	5	61	1.34
46501025--46501070	15	3.1	14	90	6	65	43	0	2	54	1.12
46501025--46501065	5	8.4	5	89	5	66	43	0	0	56	0.99
46507292--46507326	6	5.8	6	100	0	70	31	0	68	0	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175