genome.fa.s16.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  158  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47665760--47665798	16	2.5	15	84	12	51	53	7	2	35	1.43
47667033--47667098	33	2.0	33	100	0	132	36	30	12	21	1.90
47667969--47668014	17	2.8	18	84	15	64	28	41	30	0	1.56
47686608--47686654	19	2.7	17	72	15	51	40	6	0	53	1.27
47689513--47689953	45	9.8	45	95	0	765	36	15	21	26	1.93
47689975--47690283	45	6.9	45	94	0	510	25	19	15	38	1.91
47690397--47690428	16	2.0	16	100	0	64	50	25	12	12	1.75
47691031--47691083	17	3.1	17	70	5	52	20	11	5	62	1.49
47691030--47691083	18	3.1	18	70	5	56	20	11	5	62	1.47
47691214--47691358	66	2.1	68	93	5	249	15	18	15	51	1.77
47691336--47691360	13	1.9	13	100	0	50	8	0	4	88	0.64
47696483--47696530	21	2.3	21	77	0	51	18	14	14	52	1.75
47696456--47696595	42	3.3	41	81	4	145	14	20	16	48	1.81
47696507--47696595	21	4.2	21	68	5	63	13	21	17	47	1.82
47696456--47696654	84	2.4	84	80	1	202	16	21	16	46	1.84
47696523--47696626	42	2.5	42	88	0	154	16	22	18	43	1.88
47696523--47696652	42	3.1	40	83	6	143	16	22	17	43	1.87
47696738--47696841	30	3.4	30	69	18	97	40	1	23	34	1.66
47696723--47696845	61	2.0	61	100	0	246	37	3	23	35	1.71
47696731--47696832	32	3.3	32	68	18	106	41	1	23	33	1.66
47698703--47698746	22	2.0	22	100	0	88	54	9	9	27	1.62
47699115--47699172	28	2.0	31	83	12	79	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47702844--47702948	44	2.5	40	76	15	113	32	28	3	35	1.75
47702842--47702951	45	2.6	44	81	8	131	32	28	4	34	1.77
47702932--47702983	16	3.2	16	91	0	77	34	34	0	30	1.58
47707550--47707628	34	2.4	33	81	6	106	37	3	1	56	1.25
47707597--47707635	20	2.0	19	85	14	53	41	5	0	53	1.23
47707597--47707635	19	2.0	20	85	14	55	41	5	0	53	1.23
47708543--47708627	42	2.0	43	93	2	145	32	21	18	27	1.97
47708705--47708879	42	4.1	42	81	5	192	35	21	17	26	1.95
47709190--47709257	21	3.2	21	87	0	100	1	45	20	32	1.60
47714672--47714899	9	25.9	9	75	11	204	32	1	19	46	1.58
47714665--47714898	25	8.9	27	71	16	140	31	1	19	47	1.58
47714702--47714898	104	1.9	104	87	2	288	31	1	20	46	1.57
47714911--47715085	57	3.1	57	92	0	287	40	6	7	46	1.57
47714879--47715224	151	2.3	151	80	6	380	41	5	9	44	1.59
47714968--47715179	94	2.3	94	80	8	227	41	5	9	43	1.60
47714946--47715085	20	7.3	20	70	15	116	39	5	7	47	1.55
47714911--47715130	114	1.9	114	81	7	268	41	5	8	43	1.59
47714914--47715499	208	2.8	208	96	1	1059	41	5	9	44	1.60
47715154--47715254	20	5.2	20	73	11	93	39	4	7	47	1.54
47715122--47715293	57	3.0	57	91	1	274	38	5	9	46	1.58
47715041--47715224	94	2.0	94	81	4	219	41	5	10	42	1.63
47714968--47715432	151	3.1	151	80	5	453	41	5	10	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47715362--47715555	20	10.2	20	69	15	135	40	4	7	47	1.51
47715330--47715555	57	4.0	57	91	0	328	41	3	8	46	1.53
47715233--47715432	94	2.1	94	78	5	217	41	5	10	43	1.62
47718654--47718698	23	2.0	23	95	4	83	22	4	42	31	1.73
47718772--47719241	147	3.2	146	79	2	444	36	22	14	26	1.93
47720486--47720906	114	3.7	114	79	5	397	25	27	22	23	2.00
47720783--47720859	41	1.9	40	81	7	93	27	27	18	27	1.98
47722549--47722649	46	2.1	47	78	10	109	28	18	16	35	1.93
47723616--47723661	18	2.6	17	86	10	65	26	6	4	63	1.38
47732743--47732790	16	3.1	15	90	6	69	64	2	2	31	1.16
47732739--47732790	8	6.5	8	82	8	61	65	1	1	30	1.14
47732738--47732794	24	2.4	24	79	5	71	64	1	3	29	1.20
47732942--47733006	25	2.7	25	88	6	91	52	4	7	35	1.51
47733021--47733083	16	4.1	16	75	19	53	61	0	3	34	1.12
47733031--47733164	25	5.6	25	70	15	86	58	2	4	35	1.31
47733651--47733795	30	4.8	30	94	0	254	21	3	49	25	1.65
47734511--47735090	74	7.5	73	71	15	360	33	21	16	28	1.95
47734699--47734726	14	2.0	14	100	0	56	57	7	21	14	1.61
47734625--47734801	89	2.0	89	85	6	243	36	19	18	25	1.94
47734708--47734876	73	2.3	74	87	2	250	36	21	18	24	1.95
47734856--47734890	14	2.5	15	86	13	56	60	5	14	20	1.54
47734548--47735037	162	3.0	160	88	3	689	34	21	16	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47734783--47734965	89	2.1	86	84	7	235	37	20	16	25	1.93
47734910--47735109	73	2.8	71	84	2	256	33	21	14	31	1.93
47734719--47735675	235	4.3	232	72	17	734	35	21	15	27	1.94
47735101--47735242	72	2.0	72	90	4	223	38	23	15	22	1.92
47734967--47735256	160	1.8	157	86	6	415	34	22	15	27	1.95
47735532--47735667	72	1.9	72	92	0	227	38	24	15	22	1.92
47734980--47736084	425	2.7	421	90	4	1719	35	20	15	28	1.93
47735821--47736161	77	4.5	77	85	7	405	31	19	15	32	1.94
47735821--47736179	149	2.4	150	84	5	467	34	18	15	31	1.92
47736179--47736354	71	2.5	70	84	5	205	33	22	14	28	1.94
47744844--47744908	25	2.7	25	88	6	91	52	4	7	35	1.51
47744929--47745059	25	5.6	25	72	13	91	58	2	4	35	1.31
47744929--47745054	48	2.7	44	73	19	112	57	2	4	34	1.32
47745545--47745654	30	3.7	30	91	0	175	22	2	49	25	1.63
47745545--47745760	60	3.4	60	82	13	270	23	3	48	25	1.66
47745610--47745695	41	2.1	41	100	0	172	27	2	47	22	1.63
47745651--47745760	30	3.7	30	93	0	193	23	3	48	24	1.67
47745580--47745718	71	2.0	71	94	0	242	27	2	46	23	1.66
47745550--47745755	101	2.0	101	97	0	385	24	2	48	24	1.65
47753119--47753183	34	1.9	34	87	12	98	40	7	4	47	1.53
47753259--47753300	17	2.6	16	85	10	59	61	2	0	35	1.09
47754755--47754809	26	2.1	25	86	10	74	30	0	5	63	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47779476--47779566	44	2.1	44	85	4	121	26	21	5	46	1.73
47784947--47785000	13	3.5	17	73	21	57	35	1	0	62	1.06
47784955--47785038	40	2.1	40	91	4	134	35	2	0	61	1.09
47784947--47785004	29	2.1	28	80	6	73	37	1	0	60	1.07
47785017--47785060	20	2.2	20	88	4	63	36	0	0	63	0.95
47784972--47785060	40	2.2	40	75	18	96	38	1	0	60	1.04
47785963--47786003	16	2.6	16	84	3	57	41	26	12	19	1.87
47786211--47786251	16	2.6	16	88	3	66	41	17	17	24	1.89
47790609--47790638	3	10.0	3	100	0	60	33	0	0	66	0.92
47790637--47790685	8	6.0	8	79	11	55	36	0	2	61	1.08
47791243--47791284	2	20.5	2	81	13	50	42	7	0	50	1.30
47795946--47795983	11	3.5	11	82	10	51	36	2	0	60	1.11
47796608--47796648	21	2.0	20	90	4	64	41	14	2	41	1.59
47797742--47797783	21	2.0	21	85	0	57	35	2	0	61	1.09
47798334--47798382	23	2.0	26	84	11	68	40	14	0	44	1.45
47804423--47804464	10	4.1	10	79	14	50	83	4	0	11	0.79
47809251--47809287	18	2.1	18	100	0	74	16	32	10	40	1.83
47816085--47816110	13	2.0	13	100	0	52	61	30	0	7	1.24
47816916--47816950	11	3.2	11	88	11	54	0	54	0	45	0.99
47817430--47817454	3	8.3	3	100	0	50	32	0	0	68	0.90
47817417--47817659	122	2.0	124	83	8	316	30	6	6	56	1.48
47817945--47817971	11	2.5	11	100	0	54	29	7	7	55	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47821107--47821148	16	2.5	16	88	7	57	83	4	0	11	0.79
47821723--47821763	14	2.7	16	77	14	50	53	24	0	21	1.46
47823204--47823241	17	2.2	17	86	9	51	68	2	0	28	1.03
47841247--47841297	26	2.0	25	85	7	68	54	3	5	35	1.43
47841311--47841359	15	3.1	16	77	11	57	59	2	0	38	1.09
47843008--47843060	6	8.5	6	77	8	52	13	5	5	75	1.16
47843086--47843125	3	13.3	3	100	0	80	32	0	0	67	0.91
47845177--47845207	11	2.8	11	100	0	62	19	19	6	54	1.65
47846357--47846381	7	3.6	7	100	0	50	28	0	12	60	1.32
47847228--47847276	24	2.0	24	100	0	98	24	38	20	16	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175