genome.fa.s16.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  169  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50788322--50788360	18	2.2	17	86	13	53	33	0	20	46	1.51
50788586--50788683	23	4.3	23	90	2	162	20	21	26	31	1.98
50788588--50788676	45	2.0	45	95	0	160	19	22	26	31	1.97
50791534--50791652	59	2.0	59	93	0	202	39	10	10	39	1.74
50794224--50794290	23	2.9	24	75	4	75	58	2	1	37	1.23
50794220--50794292	13	6.1	13	65	18	50	58	2	1	36	1.21
50797211--50797331	55	2.2	53	79	15	140	28	3	5	61	1.35
50799642--50799670	5	5.8	5	100	0	58	41	37	0	20	1.53
50805918--50805953	14	2.6	14	100	0	72	19	5	0	75	1.00
50810246--50810308	24	2.7	24	82	2	83	61	3	0	34	1.12
50810665--50810702	9	4.1	9	84	15	51	55	0	0	44	0.99
50816586--50816660	31	2.5	29	83	10	89	48	13	5	33	1.65
50825810--50826000	59	3.2	59	75	11	224	41	0	3	54	1.22
50825910--50825955	18	2.6	18	86	6	58	43	0	2	54	1.12
50825805--50826322	122	4.4	121	74	17	518	42	0	4	52	1.27
50825972--50826023	22	2.4	21	79	17	54	38	0	5	55	1.24
50825941--50826163	103	2.2	104	92	2	369	41	0	4	52	1.29
50825819--50826282	225	2.1	225	99	0	919	41	0	4	52	1.28
50826049--50826105	26	2.1	28	87	9	82	38	0	1	59	1.08
50826135--50826180	18	2.6	18	86	6	58	43	0	2	54	1.12
50826197--50826248	22	2.4	21	79	17	54	38	0	5	55	1.24
50826044--50826357	122	2.6	119	88	5	348	41	0	4	52	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50826459--50826555	45	2.2	45	87	5	135	32	28	5	32	1.79
50826535--50826567	16	2.1	16	100	0	66	21	36	6	36	1.78
50826948--50827383	78	5.6	77	73	6	281	29	19	21	30	1.97
50830638--50830688	15	3.5	15	84	10	70	52	0	11	35	1.38
50832042--50832108	35	1.9	35	96	0	125	20	11	49	17	1.79
50834164--50834268	54	1.9	54	90	0	165	22	24	22	29	1.99
50835034--50835083	17	2.7	20	78	18	70	10	0	44	46	1.37
50839674--50839723	17	2.7	20	78	18	70	10	0	44	46	1.37
50847477--50847653	55	3.2	55	90	1	266	50	18	7	23	1.72
50847643--50847766	55	2.3	55	87	2	169	49	16	8	25	1.75
50847554--50847742	89	2.1	89	90	1	290	49	18	8	23	1.75
50847499--50847766	144	1.9	144	86	1	385	50	18	8	23	1.74
50848638--50848662	5	5.0	5	100	0	50	60	0	0	40	0.97
50850781--50850887	42	2.5	42	92	5	173	14	31	29	24	1.94
50858316--50858349	17	2.0	17	94	0	59	44	50	0	5	1.26
50862852--50862885	17	2.0	17	94	0	59	44	50	0	5	1.26
50863262--50863303	22	1.9	22	90	0	66	40	2	0	57	1.12
50870696--50870742	21	2.2	22	92	3	78	21	38	19	21	1.94
50889412--50889491	36	2.2	36	81	2	88	43	17	12	26	1.84
50889425--50889497	36	2.0	36	91	0	119	39	13	16	30	1.87
50890872--50890905	16	2.1	16	100	0	68	47	17	11	23	1.81
50891105--50891176	36	2.0	36	100	0	144	38	22	11	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50901204--50901255	24	2.2	24	89	0	77	36	3	9	50	1.54
50905102--50905547	99	4.2	108	85	10	603	41	14	15	28	1.87
50905634--50905989	108	3.4	107	85	7	482	30	15	14	39	1.87
50905995--50906194	103	2.0	100	86	8	282	30	17	15	37	1.90
50905858--50906128	137	2.0	137	94	0	481	31	15	13	39	1.87
50911038--50911100	31	2.0	31	100	0	126	58	15	12	12	1.63
50913467--50913492	6	4.3	6	100	0	52	38	15	30	15	1.88
50915249--50915314	33	2.0	33	90	0	105	53	18	10	18	1.72
50917990--50918038	25	2.0	25	84	4	64	53	2	2	42	1.24
50919649--50919768	64	1.9	64	83	0	159	23	21	21	33	1.97
50922311--50922363	21	2.5	21	82	14	65	64	3	3	28	1.28
50922305--50922361	23	2.5	24	83	13	75	64	3	3	28	1.26
50922437--50922503	25	2.8	24	78	15	75	38	0	2	58	1.14
50922526--50922591	26	2.6	26	78	7	73	39	0	3	57	1.14
50934500--50934557	19	3.0	19	92	2	89	68	8	5	17	1.33
50941799--50942041	132	1.8	135	82	7	316	36	10	20	32	1.87
50941827--50942190	132	2.7	134	77	11	348	34	12	21	31	1.91
50953895--50953936	13	3.3	13	80	6	50	71	7	0	21	1.09
50958306--50958340	13	2.8	13	91	4	54	51	2	2	42	1.31
50959596--50959627	16	2.0	16	100	0	64	37	18	12	31	1.88
50963038--50963095	22	2.6	22	84	12	75	43	0	0	56	0.99
50964069--50964121	17	3.0	17	81	10	54	33	0	5	60	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50964116--50964164	22	2.2	22	88	0	71	38	8	2	51	1.43
50975466--50975508	21	2.0	21	82	8	52	58	0	2	39	1.11
50978175--50978228	28	1.9	28	85	7	74	37	7	5	50	1.54
50983184--50983253	24	2.8	25	78	2	79	31	20	27	21	1.98
50983364--50983435	26	2.8	26	91	0	108	38	23	20	16	1.92
50983367--50983455	26	3.4	26	87	3	90	42	22	16	17	1.89
50989592--50989625	17	2.0	17	88	0	50	47	11	11	29	1.76
50991755--50991782	14	2.0	14	100	0	56	28	7	28	35	1.84
50992596--50992785	95	2.0	95	97	0	362	32	14	13	40	1.85
50995963--50995997	17	1.9	19	88	11	56	68	5	0	25	1.11
50999994--51000072	3	25.7	3	78	5	68	40	2	1	55	1.21
50999994--51000023	10	3.0	10	90	0	51	33	0	0	66	0.92
51010687--51010719	13	2.4	14	90	10	50	63	0	3	33	1.10
51013773--51013813	20	2.0	20	100	0	82	39	14	34	12	1.84
51020781--51020833	21	2.5	21	84	6	63	32	5	3	58	1.39
51023947--51023994	25	1.9	25	87	8	71	52	10	2	35	1.48
51028753--51028817	31	2.1	32	82	8	80	35	16	4	43	1.69
51031678--51031719	21	2.0	21	100	0	84	28	0	33	38	1.58
51038578--51038646	16	4.2	16	92	3	120	24	1	37	36	1.65
51038578--51038646	33	2.1	32	94	2	120	24	1	37	36	1.65
51038627--51038717	45	2.0	45	85	2	121	27	6	28	37	1.82
51038882--51038916	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51038865--51040209	120	11.2	120	99	0	2573	48	6	1	43	1.39
51039122--51039156	18	2.0	17	88	5	52	54	0	0	45	0.99
51043280--51043330	26	2.0	26	96	0	93	47	23	11	17	1.81
51044269--51044313	22	2.0	22	83	12	56	51	2	8	37	1.46
51046300--51046401	30	3.4	31	83	5	122	29	22	3	44	1.71
51046668--51046714	17	2.8	17	84	12	62	68	0	31	0	0.90
51046665--51046714	19	2.7	20	81	12	61	68	0	32	0	0.90
51046769--51046840	3	25.0	3	76	18	57	70	0	29	0	0.87
51046772--51046800	10	2.9	10	100	0	58	62	0	37	0	0.96
51046769--51046811	13	3.5	13	82	17	56	62	0	37	0	0.95
51046796--51046841	11	4.2	11	88	5	58	78	0	21	0	0.76
51046769--51046837	24	2.8	25	82	8	70	71	0	28	0	0.87
51046807--51046851	18	2.5	19	82	10	58	82	0	13	4	0.82
51046917--51046965	16	3.4	14	80	13	55	81	14	4	0	0.83
51047102--51047166	11	6.0	10	82	10	67	80	0	20	0	0.72
51047493--51048010	17	29.9	17	69	18	224	33	12	11	43	1.78
51047504--51047557	16	3.2	16	75	14	56	35	14	9	40	1.78
51047550--51047724	74	2.4	74	81	5	185	37	13	9	40	1.76
51047514--51047757	38	6.7	37	72	15	131	34	13	10	41	1.79
51047516--51048011	35	14.3	34	70	18	188	33	12	11	43	1.77
51047902--51048010	33	3.3	32	82	5	128	31	11	12	44	1.77
51047989--51048041	20	2.6	20	77	14	63	43	9	7	39	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51048030--51048066	17	2.3	17	81	9	51	37	16	10	35	1.83
51054533--51055339	192	4.2	192	98	0	1535	30	13	20	34	1.92
51055256--51055461	54	3.5	54	67	17	160	27	14	21	36	1.92
51055179--51055463	123	2.3	123	97	0	543	27	14	22	35	1.93
51055481--51055514	16	2.1	17	88	5	52	17	11	5	64	1.45
51055420--51055830	191	2.2	182	82	10	480	26	17	18	37	1.92
51055420--51055678	91	2.9	88	81	10	300	27	18	17	37	1.93
51055774--51055991	54	4.1	55	87	10	317	28	16	17	37	1.91
51056233--51056266	14	2.4	15	90	9	54	70	2	0	26	1.01
51056262--51056363	30	3.4	31	83	5	122	30	22	2	44	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175