genome.fa.s90.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  10  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2745442--2745678	62	3.8	62	72	10	182	35	9	10	45	1.71
2745414--2745688	124	2.2	125	77	8	290	36	9	10	42	1.73
2748770--2748801	13	2.4	14	94	5	57	68	3	0	28	1.04
2767558--2767607	15	3.3	15	76	18	50	50	8	2	40	1.43
2795037--2795104	34	2.0	35	88	2	102	63	4	4	27	1.33
2795081--2795110	13	2.3	13	94	0	51	86	3	0	10	0.67
2798868--2798937	25	2.7	27	76	14	83	34	20	5	40	1.76
2799846--2800158	156	2.0	156	98	0	608	29	25	13	32	1.93
2801277--2801323	24	2.0	24	91	0	76	36	2	0	61	1.08
2801297--2801360	21	3.0	22	82	11	71	45	0	0	54	0.99
2801287--2801336	24	2.1	24	85	10	68	44	0	0	56	0.99
2814703--2814736	2	17.5	2	93	6	61	47	0	0	52	1.00
2821290--2822354	534	2.0	531	91	2	1735	35	17	17	30	1.93
2829740--2829776	2	18.5	2	100	0	74	48	0	0	51	1.00
2837051--2837101	4	12.8	4	95	0	66	41	0	7	50	1.31
2846924--2846948	2	12.5	2	100	0	50	48	0	0	52	1.00
2849507--2849532	1	26.0	1	100	0	52	100	0	0	0	0.00
2856342--2856402	16	3.8	16	78	4	68	45	4	0	49	1.23
2856342--2856405	33	1.9	33	87	0	92	45	4	0	50	1.22
2856583--2856646	24	2.6	24	73	11	67	34	3	0	62	1.11
2860313--2860360	15	3.3	15	78	21	57	60	0	0	39	0.97
2860779--2860968	101	1.9	100	92	5	321	50	1	11	36	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2865834--2865873	21	1.9	21	85	10	55	75	0	10	15	1.05
2872823--2872858	2	18.0	2	100	0	72	50	0	0	50	1.00
2873679--2873741	21	3.2	19	75	20	58	53	1	3	41	1.26
2873984--2874019	17	2.1	17	89	5	54	72	0	2	25	0.98
2874803--2874848	19	2.4	20	75	10	51	65	2	0	32	1.05
2889716--2889763	15	3.3	13	83	16	51	31	2	0	66	1.03
2889707--2889763	29	2.0	29	83	13	73	31	3	0	64	1.10
2890890--2890930	20	2.0	20	90	4	64	51	0	0	48	1.00
2897144--2897169	2	13.0	2	100	0	52	0	0	50	50	1.00
2903640--2903713	36	2.1	36	100	0	148	52	13	8	25	1.67
2905152--2905190	19	2.1	19	90	4	62	41	0	0	58	0.98
2905578--2905637	21	2.9	20	72	16	59	36	5	5	53	1.45
2906678--2906757	36	2.3	36	79	14	87	32	3	3	60	1.32
2906748--2906791	21	2.2	20	83	4	52	27	2	4	65	1.23
2907082--2907146	19	3.4	18	81	12	69	33	3	0	63	1.10
2907086--2907140	17	3.1	18	82	10	60	36	1	0	61	1.06
2907424--2907469	17	2.6	19	83	13	62	28	6	2	63	1.31
2907641--2907699	17	3.3	18	75	15	59	32	3	1	62	1.21
2907630--2907689	17	3.7	16	75	16	61	31	1	1	65	1.13
2907867--2907936	21	3.4	20	71	23	56	34	4	4	57	1.38
2908231--2908275	21	2.2	20	84	15	56	77	4	6	11	1.09
2908338--2908390	20	2.7	21	85	11	76	54	0	3	41	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2926646--2926688	7	6.1	7	100	0	86	27	13	16	41	1.86
2941166--2941226	23	2.6	25	84	7	74	50	0	0	49	1.00
2941193--2941296	46	2.3	47	77	17	112	48	0	2	48	1.23
2941266--2941313	17	3.1	17	80	19	61	58	0	0	41	0.98
2941266--2941307	23	1.9	22	85	9	59	59	0	0	40	0.97
2941283--2941336	17	3.3	16	82	12	65	46	3	1	48	1.30
2941308--2941341	15	2.2	16	89	5	52	41	5	5	47	1.52
2953292--2953337	20	2.2	20	84	7	56	43	0	0	56	0.99
2959997--2960105	54	2.0	54	91	1	175	32	9	4	54	1.53
2966914--2966939	2	13.0	2	100	0	52	50	0	0	50	1.00
2971309--2971362	23	2.3	24	77	6	56	33	1	1	62	1.16
2972748--2972772	12	2.1	12	100	0	50	48	0	0	52	1.00
2972869--2972904	18	2.1	18	90	10	58	38	0	0	61	0.96
2972924--2973005	21	3.9	22	75	15	59	56	8	0	35	1.30
2972889--2972949	32	1.9	31	86	3	86	50	4	0	44	1.23
2975672--2975723	20	2.5	20	81	6	59	19	5	11	63	1.47
2975718--2975755	15	2.6	15	84	15	53	34	0	2	63	1.09
2977608--2977634	2	13.5	2	100	0	54	48	0	0	51	1.00
2979399--2979443	21	2.2	20	92	4	72	33	0	4	62	1.15
2986725--2986766	20	2.0	23	86	13	63	54	9	30	4	1.53
2987528--2987562	15	2.3	15	90	0	52	42	0	0	57	0.99
2989947--2989998	17	2.8	18	80	11	52	55	0	5	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3001722--3001788	24	2.9	22	80	14	73	55	0	1	43	1.09
3002989--3003040	20	2.8	17	81	16	59	63	0	3	32	1.12
3003032--3003090	24	2.5	24	100	0	118	62	10	0	27	1.27
3004998--3005042	22	2.0	23	86	4	65	40	0	4	55	1.20
3004977--3005050	36	2.0	36	82	12	87	41	0	5	52	1.24
3010317--3010405	31	2.9	30	85	3	106	44	25	2	26	1.66
3010398--3010445	15	3.1	15	80	17	53	52	20	0	27	1.47
3010492--3010525	17	1.9	18	88	5	52	41	29	2	26	1.70
3022362--3022406	23	2.0	23	86	8	65	44	4	4	46	1.43
3027694--3027727	11	3.1	11	95	0	59	67	0	5	26	1.13
3027749--3027810	31	2.0	30	84	3	79	37	3	4	54	1.38
3028316--3028368	23	2.3	23	86	0	70	33	0	0	66	0.92
3028314--3028424	29	3.9	30	81	5	124	35	3	2	58	1.30
3028393--3028495	20	4.8	20	69	23	68	43	5	0	50	1.26
3028407--3028451	24	1.9	24	90	4	74	46	4	0	48	1.22
3030459--3030489	11	2.9	11	95	4	55	93	0	6	0	0.35
3030773--3030863	29	3.0	30	78	14	96	51	1	1	46	1.15
3048126--3048208	28	3.0	27	69	13	69	55	1	2	40	1.21
3048188--3048222	17	2.1	17	88	0	52	62	2	0	34	1.10
3049176--3049201	13	2.0	13	100	0	52	53	0	0	46	1.00
3075388--3075425	14	2.7	15	84	12	53	63	0	0	36	0.95
3075523--3075584	29	2.1	29	82	11	74	37	3	0	59	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3075523--3075601	25	2.9	29	82	14	80	35	2	0	62	1.09
3075547--3075614	11	6.0	11	76	19	59	33	1	0	64	1.02
3075625--3075654	15	2.0	15	100	0	60	40	20	0	40	1.52
3076207--3076257	25	2.0	27	84	7	70	50	0	3	45	1.20
3076205--3076265	26	2.3	27	80	8	72	55	0	3	40	1.16
3077901--3077927	3	9.0	3	100	0	54	66	0	33	0	0.92
3083082--3083146	30	2.1	31	97	2	123	27	21	12	38	1.89
3083203--3083336	64	2.1	64	92	0	223	24	16	17	41	1.90
3090093--3090171	29	2.8	28	78	5	86	54	1	2	41	1.22
3090123--3090207	12	6.6	12	72	18	64	49	0	3	47	1.18
3090157--3090207	14	4.1	13	76	16	54	47	0	3	49	1.20
3090612--3090665	25	2.4	21	79	14	63	35	0	3	61	1.14
3093699--3093847	72	2.1	72	83	3	185	36	14	16	33	1.88
3099316--3099343	2	14.0	2	100	0	56	50	0	0	50	1.00
3103652--3103837	91	2.0	91	95	0	336	18	28	25	26	1.98
3104561--3104594	15	2.3	15	89	0	50	50	2	0	47	1.16
3104859--3104884	6	4.3	6	100	0	52	61	0	0	38	0.96
3104893--3104978	29	3.0	29	71	23	74	45	0	2	52	1.13
3108632--3108729	51	1.9	51	89	2	151	44	13	5	36	1.66
3109497--3109521	6	4.2	6	100	0	50	32	52	16	0	1.44
3112118--3112246	32	4.0	32	97	0	249	41	15	3	40	1.63
3113264--3113294	2	15.5	2	100	0	62	0	0	51	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3116710--3116747	18	2.1	18	100	0	76	63	15	5	15	1.48
3121587--3121668	22	3.7	22	71	20	64	53	0	0	46	1.00
3121596--3121676	18	4.8	16	78	13	74	55	0	0	44	0.99
3121613--3121676	25	2.5	25	76	20	69	54	0	0	45	0.99
3122670--3122703	2	17.5	2	87	6	52	47	0	2	50	1.16
3123379--3123417	20	2.0	20	94	0	69	23	17	10	48	1.78
3124456--3124494	20	2.0	20	94	0	69	23	17	10	48	1.78
3125077--3125117	20	2.0	20	95	0	73	19	17	14	48	1.81
3142678--3142719	16	2.7	16	85	3	50	52	0	0	47	1.00
3148493--3148533	7	5.6	7	86	11	55	63	2	0	34	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117