genome.fa.s90.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  44  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10451671--10451789	4	30.0	4	75	16	79	19	3	5	72	1.18
10451671--10451760	39	2.3	39	84	3	110	20	2	5	72	1.16
10451801--10451849	23	2.2	22	81	3	53	55	0	4	40	1.19
10453563--10453596	15	2.4	14	85	9	50	41	0	0	58	0.98
10454014--10454145	53	2.5	53	89	4	196	45	0	9	43	1.42
10455586--10455661	22	3.3	23	83	12	102	61	3	2	31	1.28
10461757--10461879	54	2.3	53	83	5	149	26	11	6	56	1.59
10462770--10462801	9	3.6	9	91	0	55	12	3	0	84	0.74
10462959--10463207	40	6.0	41	78	3	223	44	19	11	24	1.84
10462995--10463209	42	5.3	41	78	3	220	45	18	11	25	1.83
10462985--10463209	82	2.7	81	79	8	238	45	17	11	25	1.82
10463545--10463584	21	1.9	21	100	0	80	37	15	10	37	1.80
10463551--10463600	20	2.4	21	86	3	66	40	14	6	40	1.70
10463488--10463980	79	6.2	79	88	0	662	32	17	13	36	1.88
10463626--10463742	21	5.8	21	68	17	86	36	16	11	35	1.84
10463488--10463980	159	3.1	158	89	0	707	32	17	13	36	1.88
10463940--10463994	21	2.5	22	79	2	67	36	16	10	36	1.84
10465284--10465325	9	4.4	10	90	6	61	2	7	0	90	0.53
10465265--10465333	19	3.6	19	75	7	59	7	11	0	81	0.88
10465289--10465324	1	36.0	1	94	0	63	0	2	0	97	0.18
10465686--10465732	24	2.0	24	82	0	58	6	21	2	70	1.20
10469979--10470030	22	2.4	21	64	3	50	28	3	0	67	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10478563--10478595	14	2.4	14	94	0	57	63	0	0	36	0.95
10478799--10478842	22	2.0	22	95	0	79	54	2	4	38	1.33
10479447--10479555	56	2.0	55	83	1	137	20	12	15	51	1.76
10480525--10480584	30	2.0	30	96	0	111	41	10	10	38	1.72
10482505--10482839	128	2.6	128	81	4	365	44	10	7	37	1.67
10482505--10482896	128	3.1	127	78	5	344	46	10	7	35	1.66
10486947--10487005	21	2.8	20	80	12	66	66	3	0	30	1.08
10486975--10487070	10	10.1	9	73	21	54	78	5	0	16	0.93
10486992--10487026	15	2.3	15	90	0	52	74	8	0	17	1.06
10486992--10487060	8	8.6	8	80	12	61	78	7	0	14	0.96
10487007--10487070	17	3.7	17	83	8	76	82	4	0	12	0.81
10487007--10487070	26	2.5	25	80	7	74	82	4	0	12	0.81
10487002--10487070	8	8.1	8	78	12	66	81	5	0	13	0.87
10486978--10487069	41	2.2	44	79	13	104	78	5	0	16	0.93
10488361--10488408	18	2.6	18	80	9	53	68	2	4	25	1.18
10488582--10488608	14	1.9	14	100	0	54	74	0	0	25	0.83
10488582--10488615	14	2.6	13	90	9	52	76	0	0	23	0.79
10500371--10501008	47	13.2	46	78	8	492	30	10	20	38	1.87
10500366--10500978	96	6.4	97	79	8	578	30	10	20	38	1.87
10500366--10501008	143	4.4	146	82	6	659	30	10	20	38	1.87
10500988--10501039	14	3.5	14	70	14	50	36	3	15	44	1.65
10500980--10501039	31	2.0	31	90	3	95	35	8	18	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10500937--10501089	80	1.9	82	86	2	220	32	10	18	39	1.84
10501033--10501183	46	3.1	49	81	11	195	30	11	17	39	1.86
10501017--10501194	50	3.7	49	80	8	204	30	11	17	39	1.85
10501473--10501522	18	2.9	17	82	5	64	78	6	0	16	0.95
10503001--10503033	13	2.6	13	90	4	50	78	6	0	15	0.93
10506230--10506267	19	2.1	19	95	5	69	63	10	0	26	1.27
10506340--10506407	36	1.9	36	82	8	86	61	5	0	32	1.20
10506547--10506593	19	2.5	19	86	10	62	36	2	8	53	1.44
10506641--10506674	10	3.4	10	87	0	50	29	5	0	64	1.17
10506641--10506679	20	2.0	20	89	0	60	38	5	0	56	1.22
10506612--10506741	57	2.3	56	79	11	131	34	2	4	58	1.31
10506663--10506737	29	2.6	29	79	10	82	37	1	5	56	1.31
10506727--10506752	11	2.4	11	100	0	52	30	0	0	69	0.89
10506725--10506791	30	2.2	31	84	7	93	32	1	5	59	1.31
10506936--10506990	25	2.1	26	83	6	67	41	3	3	50	1.37
10507310--10507390	34	2.4	33	82	8	101	53	8	1	37	1.40
10512196--10512238	14	3.1	14	79	0	50	53	4	2	39	1.34
10515027--10515095	25	3.0	22	69	18	52	36	0	2	60	1.11
10516495--10516546	19	2.8	18	83	13	61	75	1	7	15	1.12
10517030--10517078	18	2.7	18	77	0	53	38	6	10	44	1.63
10517384--10517468	43	2.0	43	86	4	118	43	14	9	32	1.77
10518572--10518615	16	2.6	17	85	7	54	9	15	0	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10518938--10518986	23	2.0	24	81	14	57	71	0	12	16	1.14
10537597--10537621	11	2.3	11	100	0	50	44	16	12	28	1.83
10539134--10539220	21	4.4	20	69	17	74	16	1	29	52	1.51
10539113--10539243	44	3.0	42	72	15	124	16	1	31	51	1.53
10539207--10539473	29	9.2	28	78	9	214	18	1	32	47	1.56
10539237--10539460	16	15.2	15	66	16	85	18	1	33	46	1.58
10539207--10539460	58	4.3	59	86	4	284	18	1	33	46	1.56
10539766--10539801	7	5.0	7	89	3	54	30	2	0	66	1.06
10539766--10539807	21	2.0	22	85	4	59	30	7	0	61	1.22
10541143--10541201	28	2.1	28	84	6	75	30	11	27	30	1.92
10541542--10541724	36	5.1	36	70	13	128	46	8	21	23	1.77
10541481--10541717	107	2.2	106	81	10	254	47	8	19	24	1.78
10541745--10542072	107	3.1	106	75	6	308	47	9	18	24	1.78
10542635--10542703	21	3.2	21	66	18	61	11	13	10	65	1.48
10542627--10542713	43	2.0	43	100	0	174	14	13	9	62	1.55
10542634--10542702	22	3.2	22	65	19	63	11	11	10	66	1.45
10554783--10554967	58	3.2	58	81	4	214	18	2	27	50	1.60
10554933--10555024	29	3.2	28	83	10	98	19	0	32	47	1.50
10555310--10555349	7	5.9	7	91	5	64	27	0	0	72	0.85
10557344--10557382	20	2.0	20	90	5	62	41	2	0	56	1.13
10559004--10559033	2	15.0	2	100	0	60	0	50	0	50	1.00
10559867--10559911	3	15.0	3	80	0	54	64	2	28	4	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10563969--10564004	19	1.9	18	88	5	54	72	0	19	8	1.10
10564565--10564656	20	4.6	20	82	2	105	30	7	11	50	1.67
10564567--10564694	40	3.2	40	82	9	118	30	7	10	51	1.63
10564647--10564810	52	3.0	52	79	9	168	29	6	11	53	1.61
10564590--10564809	20	11.4	20	69	21	118	30	6	11	52	1.62
10564883--10564946	24	2.7	24	80	4	67	35	1	7	54	1.39
10564909--10564972	31	2.1	31	96	0	119	37	3	7	51	1.47
10565023--10565049	14	1.9	14	100	0	54	22	0	22	55	1.44
10565019--10565064	14	2.8	16	78	21	51	21	4	21	52	1.64
10565080--10565171	18	5.0	18	80	11	89	32	4	11	51	1.59
10570899--10570976	41	1.9	41	89	5	122	69	6	8	15	1.35
10571933--10571990	29	2.0	29	83	10	73	37	6	24	31	1.82
10571943--10571998	29	1.9	29	82	7	69	42	5	21	30	1.75
10573167--10573202	6	6.0	6	96	0	63	50	13	0	36	1.43
10577022--10577142	23	5.5	22	76	17	94	27	4	0	67	1.11
10577021--10577120	6	17.7	6	84	12	115	27	4	0	69	1.07
10577020--10577128	29	3.9	28	89	7	136	26	4	0	68	1.08
10577928--10577988	3	20.3	3	100	0	122	67	0	0	32	0.91
10578248--10578279	17	1.9	17	93	6	57	37	6	15	40	1.73
10592435--10592496	27	2.3	27	86	8	81	61	6	0	32	1.21
10592696--10592741	18	2.7	17	81	15	51	41	2	0	56	1.11
10595488--10595519	14	2.3	14	94	0	55	37	3	0	59	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10596061--10596109	19	2.6	19	83	3	64	12	36	28	22	1.90
10596575--10596616	6	7.2	6	82	12	52	83	2	14	0	0.75
10596586--10596623	18	2.1	18	90	9	60	84	0	15	0	0.63
10607455--10607501	21	2.3	20	85	3	58	44	6	14	34	1.71
10607747--10607803	18	3.1	18	76	14	62	40	3	8	47	1.52
10607747--10607817	37	1.9	37	88	0	106	42	2	7	47	1.45
10617628--10617666	11	3.5	11	85	0	60	51	0	0	48	1.00
10618290--10618353	28	2.3	28	81	5	76	60	1	3	34	1.22
10622724--10623287	186	3.1	181	84	5	654	36	12	10	41	1.76
10623863--10623921	28	2.1	28	83	0	73	25	6	22	45	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117