genome.fa.s90.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  99  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18486439--18486481	1	43.0	1	80	0	50	90	6	2	0	0.52
18486439--18486481	11	4.0	11	90	3	70	90	6	2	0	0.52
18486696--18486821	21	5.8	21	70	24	75	30	1	3	65	1.18
18486682--18486836	4	39.8	4	68	21	57	28	1	3	67	1.14
18486693--18486822	17	7.6	18	69	21	59	30	1	3	65	1.17
18486682--18486836	15	10.2	16	71	21	88	28	1	3	67	1.14
18486690--18486827	58	2.4	56	75	17	129	28	1	2	66	1.14
18486787--18486838	10	5.2	10	75	9	52	28	0	0	71	0.87
18487406--18487446	11	3.7	11	83	0	55	19	31	26	21	1.97
18487448--18487485	20	1.9	20	88	0	58	42	26	15	15	1.87
18487883--18487922	17	2.4	16	84	8	53	22	5	0	72	1.04
18487909--18487956	17	2.8	17	78	9	53	12	6	2	79	1.01
18487909--18487966	14	4.2	14	76	8	57	13	6	1	77	1.05
18487932--18487971	14	2.5	17	73	23	50	15	10	0	75	1.05
18487974--18488263	56	5.0	57	86	7	388	45	7	12	34	1.69
18488733--18501474	901	14.2	896	75	11	10193	25	24	25	25	2.00
18490642--18490694	26	2.0	26	100	0	106	26	20	26	26	1.99
18491536--18491588	26	2.0	26	92	7	90	30	20	22	26	1.98
18492437--18492489	26	2.0	26	92	0	88	26	20	24	28	1.99
18493285--18493363	26	3.0	26	92	0	140	25	18	27	27	1.98
18494196--18494248	26	2.0	26	92	7	90	26	16	26	30	1.97
18495646--18495698	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18496870--18496902	11	3.0	11	95	0	57	18	42	27	12	1.85
18497863--18497915	26	2.0	26	96	0	97	26	20	24	28	1.99
18498758--18498818	26	2.4	26	83	5	81	26	13	31	29	1.93
18501422--18501526	26	4.0	26	91	0	156	25	20	25	27	1.99
18502362--18502466	26	4.0	26	91	0	165	25	20	25	28	1.99
18500545--18503195	940	2.8	937	91	1	4194	25	23	25	26	2.00
18502733--18504197	724	2.0	726	85	4	1984	24	24	23	27	2.00
18504909--18504960	26	2.0	26	96	0	95	26	19	25	28	1.98
18503469--18505934	908	2.8	887	85	6	3196	24	23	24	26	2.00
18505817--18505869	26	2.0	26	96	0	97	28	20	24	26	1.99
18507546--18507598	26	2.0	26	96	0	97	28	20	24	26	1.99
18505938--18509353	886	3.8	883	84	5	4244	24	24	24	26	2.00
18508451--18508503	26	2.0	26	88	0	79	24	16	32	26	1.97
18505938--18509353	905	3.8	898	85	4	4373	24	24	24	26	2.00
18513339--18513391	26	2.0	26	96	0	97	28	18	26	26	1.98
18515099--18515151	26	2.0	26	96	0	97	26	20	24	28	1.99
18510262--18520877	872	12.0	873	83	6	12370	25	24	24	25	2.00
18517772--18517822	26	2.0	26	96	0	93	29	19	25	25	1.99
18510262--18520877	875	12.0	900	84	5	12693	25	24	24	25	2.00
18521150--18521202	26	2.0	26	85	0	70	32	22	18	26	1.97
18520878--18523868	904	3.3	902	88	2	4257	25	24	24	24	2.00
18523373--18524340	493	2.0	492	88	2	1469	26	23	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18524354--18524432	26	3.0	26	98	0	149	26	17	26	29	1.98
18524415--18525882	741	2.0	730	88	2	2159	25	23	24	26	2.00
18526014--18526066	26	2.0	26	92	0	88	28	22	22	26	1.99
18527750--18527802	26	2.0	26	96	0	97	26	15	26	32	1.95
18528628--18528680	26	2.0	26	100	0	106	26	20	26	26	1.99
18529711--18529741	8	3.9	8	91	0	53	9	25	64	0	1.24
18526942--18534812	877	9.0	875	85	4	9399	24	23	25	25	2.00
18533022--18533074	26	2.0	26	92	0	88	28	22	22	26	1.99
18534786--18534838	26	2.0	26	100	0	106	26	20	26	26	1.99
18536403--18536455	26	2.0	26	88	0	79	26	20	22	30	1.98
18534818--18538406	864	4.1	864	83	6	4358	25	24	24	25	2.00
18538744--18538796	26	2.0	26	100	0	106	26	20	26	26	1.99
18539632--18539682	26	2.0	26	88	0	75	27	13	29	29	1.94
18540521--18540573	26	2.0	26	92	0	88	28	16	26	28	1.97
18541415--18541467	26	2.0	26	92	0	88	28	18	24	28	1.98
18542301--18542353	26	2.0	26	92	0	88	28	18	24	28	1.98
18543195--18543247	26	2.0	26	88	0	79	26	18	26	28	1.98
18544093--18544143	26	2.0	26	88	0	75	25	19	27	27	1.99
18538408--18552202	894	15.5	900	86	3	17748	25	24	24	25	2.00
18546755--18546807	26	2.0	26	96	0	97	26	18	26	28	1.98
18548552--18548604	26	2.0	26	96	0	97	24	20	28	26	1.99
18549435--18549487	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18550340--18550392	26	2.0	26	89	7	81	26	15	26	32	1.95
18551240--18551291	26	2.0	26	88	0	77	28	19	23	28	1.98
18552126--18552178	26	2.0	26	92	0	88	26	20	26	26	1.99
18552860--18552908	23	2.0	24	84	11	64	28	14	26	30	1.95
18554583--18554634	26	2.0	26	88	0	77	26	17	25	30	1.97
18555627--18555674	25	1.9	25	86	0	69	16	2	18	62	1.42
18554765--18555931	586	2.0	588	95	0	2077	26	21	22	28	1.99
18555663--18558019	877	2.7	874	87	2	3284	25	25	24	24	2.00
18560965--18561017	26	2.0	26	96	0	97	28	18	26	26	1.98
18562729--18562781	26	2.0	26	92	0	88	26	20	24	28	1.99
18559429--18567761	884	9.4	877	83	6	9320	25	24	24	25	2.00
18565389--18565441	26	2.0	26	89	7	81	30	20	24	24	1.99
18559058--18567761	876	9.8	874	84	5	10208	25	24	24	25	2.00
18567031--18568478	730	2.0	728	89	1	2206	24	23	25	26	2.00
18568758--18568810	26	2.0	26	92	0	88	28	22	22	26	1.99
18570519--18570571	26	2.0	26	96	0	97	28	20	24	26	1.99
18573020--18573075	26	2.2	26	96	0	103	28	19	23	28	1.98
18570551--18574167	881	4.1	901	85	4	4694	24	24	24	25	2.00
18574506--18574558	26	2.0	26	92	0	88	30	20	22	26	1.98
18575393--18575445	26	2.0	26	88	0	79	26	18	26	28	1.98
18576288--18576366	26	3.0	26	94	0	131	30	17	24	27	1.97
18577226--18577275	26	1.9	26	100	0	100	30	20	26	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18578113--18578165	26	2.0	26	92	0	88	28	13	26	32	1.93
18579007--18579059	26	2.0	26	92	0	88	28	18	24	28	1.98
18579893--18579945	26	2.0	26	96	0	97	26	18	26	28	1.98
18580788--18580840	26	2.0	26	88	0	79	26	18	26	28	1.98
18574169--18583365	886	10.2	899	85	4	11721	25	24	25	25	2.00
18583558--18583609	26	2.0	26	88	0	77	28	19	23	28	1.98
18584447--18584499	26	2.0	26	92	0	88	26	20	26	26	1.99
18585186--18585237	26	2.0	26	88	0	77	28	15	23	32	1.95
18586928--18586980	26	2.0	26	92	0	88	26	20	22	30	1.98
18586061--18587859	902	2.0	897	87	2	2572	25	24	24	25	2.00
18592009--18592064	26	2.2	26	93	0	94	25	17	26	30	1.97
18593778--18593829	26	2.0	26	92	0	86	26	19	25	28	1.98
18591226--18600864	895	10.9	869	82	7	9971	25	24	24	25	2.00
18594645--18594697	26	2.0	26	88	0	79	30	18	22	28	1.98
18595546--18595598	26	2.0	26	96	0	97	28	20	24	26	1.99
18604219--18604271	26	2.0	26	88	0	79	30	18	22	28	1.98
18604449--18604473	12	2.1	12	100	0	50	16	28	56	0	1.41
18605122--18605174	26	2.0	26	92	0	88	28	20	22	28	1.99
18606026--18606078	26	2.0	26	96	0	97	26	20	24	28	1.99
18606917--18606995	26	3.0	25	92	7	131	26	21	24	27	1.99
18607845--18607895	26	2.0	26	88	0	75	25	19	27	27	1.99
18608720--18608770	26	2.0	26	92	0	84	31	19	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18609618--18609689	26	2.8	26	93	0	117	29	18	23	29	1.97
18600830--18611746	904	12.2	900	85	4	13648	25	24	24	25	2.00
18611437--18611488	26	2.0	25	96	3	95	28	21	23	26	1.99
18611745--18611773	14	2.1	14	100	0	58	20	0	31	48	1.50
18613000--18613052	26	2.0	26	92	0	88	28	22	24	24	2.00
18614774--18614823	26	1.9	26	100	0	100	28	20	28	24	1.99
18612233--18617871	857	6.4	872	82	7	5087	24	23	25	26	2.00
18619305--18619357	26	2.0	26	88	0	79	26	18	26	28	1.98
18621603--18621655	26	2.0	26	85	0	70	30	16	26	26	1.97
18622335--18622387	26	2.0	26	96	0	97	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117