genome.fa.s90.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  106  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19404570--19404622	26	2.0	26	96	0	97	28	26	18	26	1.98
19405446--19405498	26	2.0	26	85	0	70	28	24	18	28	1.98
19406530--19406582	26	2.0	26	88	0	79	26	24	18	30	1.98
19407426--19407478	26	2.0	26	92	0	88	30	26	16	26	1.97
19407496--19414755	853	8.3	858	84	7	8086	25	25	24	24	2.00
19410567--19410619	26	2.0	26	96	0	97	26	24	20	28	1.99
19411458--19411510	26	2.0	26	92	0	88	28	24	18	28	1.98
19412355--19412407	26	2.0	26	88	0	79	28	24	16	30	1.97
19409799--19414755	891	5.6	887	85	6	6274	25	25	23	25	2.00
19413238--19413290	26	2.0	26	92	0	88	28	24	18	28	1.98
19414005--19415520	765	2.0	766	87	3	2167	26	24	23	25	2.00
19414770--19418317	896	4.0	894	85	5	4536	25	25	24	24	2.00
19417522--19417575	26	2.1	26	85	0	72	27	24	18	29	1.98
19416648--19418312	910	1.8	906	89	2	2592	25	25	24	24	2.00
19417549--19419034	713	2.1	717	89	1	2225	26	24	22	25	2.00
19419106--19420605	717	2.1	697	87	3	2108	26	23	24	26	2.00
19420712--19420764	26	2.0	26	92	0	88	28	24	18	28	1.98
19421632--19421683	25	2.0	25	88	3	77	30	25	17	26	1.97
19423392--19423441	26	1.9	26	100	0	100	24	28	20	28	1.99
19424281--19424333	26	2.0	26	96	0	97	28	26	18	26	1.98
19425375--19425407	12	2.8	12	100	0	66	12	45	18	24	1.83
19426913--19426966	26	2.1	26	92	0	90	27	25	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19427824--19427873	26	1.9	26	95	0	91	24	20	22	34	1.97
19429604--19429654	26	2.0	26	96	0	93	29	25	17	27	1.98
19425174--19483662	892	63.9	897	70	13	21630	25	24	24	25	2.00
19433798--19433860	30	2.1	30	100	0	126	26	41	11	20	1.86
19436688--19436740	26	2.0	26	100	0	106	26	26	20	26	1.99
19438449--19438501	26	2.0	26	100	0	106	26	26	20	26	1.99
19439351--19439429	26	3.0	26	88	0	122	27	24	20	27	1.99
19441169--19441221	26	2.0	26	96	0	97	26	24	20	28	1.99
19442963--19443012	26	1.9	26	91	0	82	26	26	18	30	1.98
19444987--19445039	26	2.0	26	96	0	97	28	26	18	26	1.98
19444139--19447138	915	3.4	878	82	8	3445	25	24	24	25	2.00
19445890--19445968	26	3.0	26	94	0	131	25	25	21	27	1.99
19447405--19447456	25	2.0	26	92	3	88	26	23	21	28	1.99
19450061--19450112	26	2.0	26	92	0	86	28	25	17	28	1.97
19447301--19462450	894	17.0	879	74	12	10997	25	24	24	25	2.00
19451932--19451984	26	2.0	26	100	0	106	26	26	20	26	1.99
19452828--19452880	26	2.0	26	96	0	97	32	26	15	26	1.95
19453722--19453774	26	2.0	26	88	0	79	26	24	18	30	1.98
19454589--19454641	26	2.0	26	92	0	88	26	22	20	30	1.98
19455493--19455545	26	2.0	26	85	0	70	26	24	18	30	1.98
19458148--19462469	903	4.8	900	77	8	4339	25	24	24	25	2.00
19461681--19461733	26	2.0	26	92	0	88	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19463470--19463494	13	1.9	13	100	0	50	16	24	40	20	1.91
19464082--19464160	26	3.0	26	90	0	131	30	25	16	27	1.97
19465918--19465970	26	2.0	26	96	0	97	26	24	20	28	1.99
19463494--19483655	900	22.5	896	82	7	20757	25	24	23	25	2.00
19469496--19469545	26	1.9	26	95	0	91	22	28	20	30	1.98
19470625--19470659	17	2.1	17	88	0	52	8	5	51	34	1.56
19471326--19471378	26	2.0	26	96	0	97	30	24	16	28	1.97
19473931--19473983	26	2.0	26	92	0	88	28	28	18	24	1.98
19474816--19474868	26	2.0	26	89	7	81	32	24	16	26	1.97
19473532--19483662	896	11.3	898	82	6	11633	25	25	23	25	2.00
19475691--19475743	26	2.0	26	100	0	106	26	26	20	26	1.99
19476578--19476630	26	2.0	26	92	0	88	28	24	20	26	1.99
19477471--19477523	26	2.0	26	88	0	79	26	26	18	28	1.98
19478352--19478404	26	2.0	26	96	0	97	26	24	20	28	1.99
19475661--19483645	882	8.9	895	81	6	8605	25	25	23	25	2.00
19479247--19479299	26	2.0	26	92	0	88	26	28	18	26	1.98
19480129--19480187	26	2.3	26	88	5	95	30	27	16	25	1.97
19481093--19481146	26	2.0	27	89	3	83	25	27	20	25	1.99
19481995--19482046	26	2.0	25	88	3	77	26	23	19	30	1.98
19482892--19482941	26	1.9	26	88	8	75	24	30	20	26	1.98
19484474--19484529	26	2.2	26	100	0	112	32	25	16	26	1.96
19483607--19486951	892	3.8	890	85	4	4336	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19486239--19486291	26	2.0	26	96	0	97	26	24	20	28	1.99
19486524--19487370	422	2.0	424	90	2	1346	33	21	18	26	1.96
19487564--19487616	26	2.0	26	88	0	79	26	22	18	32	1.97
19490213--19491614	719	1.9	719	89	2	2174	27	24	22	25	2.00
19491815--19491867	26	2.0	26	96	0	97	26	24	20	28	1.99
19492720--19492772	26	2.0	26	96	0	97	28	26	18	26	1.98
19494496--19494548	26	2.0	26	92	7	90	30	26	16	26	1.97
19494795--19495395	309	1.9	309	92	1	1017	35	16	17	29	1.93
19495708--19495763	26	2.2	26	90	0	85	28	23	21	26	1.99
19495789--19496045	136	1.9	136	87	0	379	17	24	34	22	1.96
19496680--19496732	26	2.0	26	100	0	106	26	26	20	26	1.99
19497580--19497632	26	2.0	26	100	0	106	26	26	20	26	1.99
19498470--19498548	26	3.0	26	98	0	149	26	25	20	27	1.99
19502874--19502926	26	2.0	26	92	0	88	30	24	18	26	1.98
19503766--19503818	26	2.0	26	88	0	79	24	22	22	30	1.99
19504654--19504706	26	2.0	26	96	0	97	28	26	18	26	1.98
19505559--19505608	26	1.9	26	91	0	82	24	26	22	28	1.99
19501754--19513341	899	13.0	897	86	4	15187	25	24	24	25	2.00
19506445--19506497	26	2.0	26	96	0	97	22	24	22	30	1.99
19507347--19507399	26	2.0	26	96	0	97	26	24	20	28	1.99
19509119--19509171	26	2.0	26	96	0	97	28	26	18	26	1.98
19510905--19510954	26	1.9	26	91	0	82	22	24	20	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19512651--19512701	26	2.0	26	92	0	84	29	25	17	27	1.98
19512983--19513702	360	2.0	360	92	1	1194	34	20	17	27	1.95
19515151--19515203	26	2.0	26	100	0	106	26	26	20	26	1.99
19516038--19516093	26	2.2	26	93	0	94	30	21	21	26	1.98
19514679--19519380	892	5.3	888	85	4	6095	26	24	23	25	2.00
19518689--19518741	26	2.0	26	96	0	97	28	26	18	26	1.98
19520217--19520270	26	2.1	26	89	0	81	29	22	16	31	1.96
19521111--19521163	26	2.0	26	92	0	88	28	24	18	28	1.98
19522003--19522055	26	2.0	26	96	0	97	26	26	18	28	1.98
19519410--19527184	883	8.9	883	83	7	8859	25	24	24	25	2.00
19523757--19523809	26	2.0	26	96	0	97	26	24	22	26	2.00
19524626--19524676	25	2.0	26	92	3	86	29	29	17	23	1.97
19525481--19525533	26	2.0	26	100	0	106	26	26	20	26	1.99
19527909--19527961	26	2.0	26	96	0	97	28	26	18	26	1.98
19529662--19529714	26	2.0	26	100	0	106	26	26	20	26	1.99
19531454--19531532	26	3.0	26	98	0	149	26	24	20	29	1.99
19534123--19534178	26	2.2	26	90	0	85	32	21	17	28	1.96
19534992--19535044	26	2.0	26	96	0	97	28	26	18	26	1.98
19537650--19537699	25	2.0	25	92	0	82	30	26	16	28	1.96
19533365--19545560	904	13.6	899	83	6	14366	25	25	23	25	2.00
19538530--19538582	26	2.0	26	92	0	88	32	24	15	28	1.95
19539420--19539498	26	3.0	26	92	0	140	27	25	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19541189--19541241	26	2.0	26	88	0	79	30	22	18	28	1.98
19542106--19542158	26	2.0	26	88	0	79	28	22	18	30	1.98
19543021--19543070	26	1.9	26	95	0	91	30	26	16	28	1.96
19544860--19544912	26	2.0	26	100	0	106	26	26	20	26	1.99
19545062--19546055	495	2.0	495	91	0	1623	31	22	18	27	1.97
19547140--19547192	26	2.0	26	92	0	88	26	24	18	30	1.98
19545557--19550841	894	5.9	894	87	3	7320	25	24	24	25	2.00
19549804--19549856	26	2.0	26	96	0	97	26	24	20	28	1.99
19550698--19550750	26	2.0	26	100	0	106	26	26	20	26	1.99
19551156--19551648	271	1.8	271	85	1	702	20	28	28	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117