genome.fa.s90.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  95  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17981636--17981688	26	2.0	26	96	0	97	26	18	26	28	1.98
17985195--17985247	26	2.0	26	88	0	79	26	20	24	28	1.99
17986982--17987034	26	2.0	26	96	0	97	28	20	24	26	1.99
17987876--17987928	26	2.0	26	89	7	81	32	20	20	26	1.98
17982521--17995421	894	14.3	897	82	5	14517	25	24	25	25	2.00
17988774--17988826	26	2.0	26	96	0	97	26	15	26	32	1.95
17989674--17989726	26	2.0	26	100	0	106	26	20	26	26	1.99
17991549--17991600	26	2.0	26	92	0	86	28	17	25	28	1.97
17993304--17993356	26	2.0	26	96	0	97	24	20	26	28	1.99
17992425--17995421	899	3.3	899	86	3	3976	24	24	25	24	2.00
17995103--17995154	25	2.0	26	96	3	97	26	21	25	26	1.99
17996591--17996643	26	2.0	26	85	0	70	26	24	24	24	2.00
17997493--17997545	26	2.0	26	92	0	88	28	18	24	28	1.98
17998298--17998350	26	2.0	26	100	0	106	26	20	26	26	1.99
17999192--17999241	26	1.9	26	100	0	100	28	20	26	26	1.99
17998022--18009523	904	12.9	901	86	4	13546	25	24	24	25	2.00
18003667--18003719	26	2.0	26	92	0	88	30	20	24	24	1.99
18005397--18005449	26	2.0	26	96	0	97	24	20	28	26	1.99
18006301--18006353	26	2.0	26	88	0	79	30	20	20	28	1.98
18004518--18009523	906	5.6	902	87	2	6574	25	23	24	26	2.00
18007207--18007259	26	2.0	26	92	7	90	26	16	26	30	1.97
18008100--18008151	26	2.0	26	85	3	70	28	17	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18008988--18009039	25	2.0	26	96	3	97	26	21	26	25	1.99
18011564--18011616	26	2.0	26	100	0	106	26	26	20	26	1.99
18012455--18012507	26	2.0	26	88	0	79	30	24	16	28	1.97
18014238--18014291	26	2.1	26	92	0	90	27	25	18	27	1.98
18010703--18031770	894	23.5	894	77	9	17139	25	24	24	25	2.00
18016048--18016100	26	2.0	26	92	0	88	26	22	20	30	1.98
18016938--18016990	26	2.0	26	88	0	79	30	24	16	28	1.97
18018709--18018761	26	2.0	26	88	0	79	30	24	16	28	1.97
18021552--18021604	26	2.0	26	88	0	79	30	26	15	28	1.96
18022452--18022504	26	2.0	26	92	0	88	30	22	20	26	1.98
18024201--18024257	26	2.2	26	96	0	105	26	26	19	28	1.99
18025971--18026022	25	2.0	26	96	3	97	25	26	21	26	1.99
18026862--18026911	25	2.0	26	88	4	75	30	26	16	28	1.96
18027750--18027802	26	2.0	26	92	7	90	30	26	16	26	1.97
18028656--18028708	26	2.0	26	96	0	97	28	22	18	30	1.98
18029560--18029612	26	2.0	26	92	0	88	26	26	20	26	1.99
18031339--18031389	26	2.0	26	92	0	84	27	23	19	29	1.98
18032818--18032870	26	2.0	26	92	0	88	26	16	26	30	1.97
18033704--18033756	26	2.0	26	88	0	79	28	16	24	30	1.97
18033925--18033964	17	2.4	17	100	0	80	27	32	40	0	1.57
18032771--18036406	894	4.1	887	85	4	4770	25	24	24	25	2.00
18042434--18042486	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18037962--18051641	899	15.2	900	81	6	14956	25	24	25	25	2.00
18043333--18043385	26	2.0	26	88	0	79	32	20	20	26	1.98
18044232--18044284	26	2.0	26	92	0	88	26	15	24	33	1.95
18045130--18045182	26	2.0	26	100	0	106	26	20	26	26	1.99
18046103--18046154	26	2.0	26	92	0	86	28	17	25	28	1.97
18047867--18047918	26	2.0	26	92	0	86	28	17	25	28	1.97
18036358--18051623	899	17.1	874	80	7	14247	25	24	24	25	2.00
18051399--18051450	25	2.0	26	96	3	97	26	21	25	26	1.99
18049620--18051623	902	2.2	901	86	2	2781	24	24	25	25	2.00
18054561--18054613	26	2.0	26	88	0	79	30	18	22	28	1.98
18055455--18055504	26	1.9	26	95	0	91	28	20	24	28	1.99
18052863--18057276	902	5.0	900	84	5	5384	25	24	24	25	2.00
18056603--18057972	696	2.0	695	91	1	2242	25	23	23	26	2.00
18057946--18057998	26	2.0	26	96	0	97	28	20	24	26	1.99
18057220--18061315	873	4.6	879	84	6	5033	25	23	24	25	2.00
18060600--18060652	26	2.0	26	92	0	88	28	18	26	26	1.98
18062190--18062242	26	2.0	26	96	0	97	28	20	24	26	1.99
18063075--18063125	26	2.0	26	96	0	93	29	19	25	25	1.99
18063963--18064015	26	2.0	26	96	0	97	28	20	24	26	1.99
18061313--18069303	890	9.0	886	84	5	9948	25	24	24	25	2.00
18067515--18067565	26	2.0	26	92	0	84	27	15	25	31	1.96
18069280--18069831	290	1.9	291	94	0	980	23	26	30	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18071323--18071373	26	2.0	26	92	0	84	31	15	27	25	1.96
18072226--18072278	26	2.0	26	96	0	97	28	16	24	30	1.97
18073953--18074005	26	2.0	26	92	0	88	28	18	24	28	1.98
18074840--18074892	26	2.0	26	96	0	97	26	18	26	28	1.98
18075748--18075800	26	2.0	26	96	0	97	28	20	24	26	1.99
18073534--18079766	892	7.1	886	86	5	7287	25	24	25	25	2.00
18076640--18076692	26	2.0	26	96	0	97	32	20	22	24	1.98
18076666--18079766	855	3.6	845	87	3	4047	24	23	25	26	2.00
18079784--18079836	26	2.0	26	92	0	88	26	16	26	30	1.97
18079239--18080337	571	1.9	571	89	0	1678	24	21	25	28	1.99
18081766--18081818	26	2.0	26	88	0	79	28	20	24	26	1.99
18082643--18082695	26	2.0	26	88	0	79	30	18	22	28	1.98
18083338--18083368	12	2.6	12	94	0	53	29	19	32	19	1.96
18083542--18083592	26	2.0	26	92	0	84	29	19	21	29	1.98
18084443--18084495	26	2.0	26	92	0	88	28	18	26	26	1.98
18086209--18086261	26	2.0	26	88	0	79	28	18	22	30	1.98
18081097--18089711	900	9.6	899	86	3	10999	25	23	24	25	2.00
18087113--18087162	25	2.0	26	84	4	66	30	20	20	30	1.97
18088012--18088064	26	2.0	26	89	7	81	33	16	20	28	1.95
18088915--18088967	26	2.0	26	96	0	97	26	18	26	28	1.98
18088995--18089037	20	2.2	20	91	0	68	16	30	46	6	1.73
18089836--18089964	7	18.4	7	68	25	53	27	2	3	66	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18089831--18089962	27	5.0	27	70	23	70	27	2	4	65	1.23
18089898--18089965	13	5.5	12	71	23	52	29	1	2	66	1.15
18089920--18089962	17	2.5	18	85	11	63	34	0	0	65	0.93
18090981--18091020	17	2.4	16	84	15	55	22	7	0	70	1.12
18091030--18091069	14	2.5	17	73	23	50	15	10	0	75	1.05
18091012--18091064	14	3.8	14	78	7	54	13	7	1	77	1.06
18091072--18091366	58	5.0	58	87	4	412	45	8	12	34	1.71
18091072--18091366	118	2.5	117	89	3	448	45	8	12	34	1.71
18095260--18095319	21	2.8	21	87	5	84	80	0	16	3	0.85
18095241--18095324	22	3.9	21	78	12	89	75	0	19	5	1.01
18095261--18095301	10	4.0	10	90	6	64	85	0	14	0	0.60
18095230--18095282	27	2.0	27	85	7	72	71	0	20	7	1.10
18095268--18095319	17	3.2	17	81	5	63	80	0	15	3	0.85
18095260--18095319	17	3.6	16	80	6	57	80	0	16	3	0.85
18097106--18097158	26	2.0	26	92	0	88	28	22	22	26	1.99
18098006--18098058	26	2.0	26	88	0	79	26	20	24	28	1.99
18098910--18098962	26	2.0	26	96	0	97	28	20	24	26	1.99
18096585--18099782	899	3.5	895	86	3	4391	25	23	24	25	2.00
18100506--18100558	26	2.0	26	100	0	106	26	16	26	30	1.97
18099791--18102115	903	2.6	895	88	2	3383	25	23	24	26	2.00
18102911--18102963	26	2.0	26	88	0	79	28	22	22	26	1.99
18103810--18103862	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18106474--18106526	26	2.0	26	85	0	70	28	20	22	28	1.99
18108235--18108287	26	2.0	26	92	0	88	26	16	26	30	1.97
18109130--18109208	26	3.0	26	96	0	140	26	15	26	31	1.95
18110049--18110101	26	2.0	26	92	0	88	28	18	26	26	1.98
18107377--18116491	895	10.2	899	84	5	10548	25	24	24	25	2.00
18112740--18112792	26	2.0	26	100	0	106	26	20	26	26	1.99
18113651--18113702	26	2.0	26	92	0	86	26	19	26	26	1.99
18102117--18116384	908	16.0	891	84	6	14800	25	24	24	25	2.00
18115383--18115435	26	2.0	26	92	0	88	30	18	24	26	1.98
18116465--18116517	26	2.0	26	96	0	97	28	20	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117