genome.fa.s90.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  94  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17849364--17849416	26	2.0	26	92	0	88	24	18	30	26	1.98
17850255--17850600	159	2.2	159	84	3	437	22	28	28	20	1.99
17851262--17851314	26	2.0	26	96	0	97	26	20	24	28	1.99
17851944--17851969	13	2.0	13	100	0	52	15	0	53	30	1.42
17852181--17852233	26	2.0	26	96	0	97	28	20	24	26	1.99
17853084--17853136	26	2.0	26	96	0	97	24	20	28	26	1.99
17850395--17862082	903	13.1	900	84	3	14396	25	24	24	25	2.00
17853974--17854027	26	2.1	26	92	0	90	27	22	25	24	2.00
17854873--17854925	26	2.0	26	92	0	88	24	20	26	28	1.99
17855759--17855811	26	2.0	26	96	0	97	24	20	28	26	1.99
17856656--17856708	26	2.0	26	92	0	88	28	15	24	32	1.95
17857559--17857611	26	2.0	26	96	0	97	26	18	26	28	1.98
17860213--17860265	26	2.0	26	88	0	79	26	18	24	30	1.98
17861111--17861163	26	2.0	26	92	0	88	26	20	24	28	1.99
17861993--17862045	26	2.0	26	96	0	97	28	20	26	24	1.99
17861374--17862807	724	2.0	712	87	4	2076	26	23	23	26	2.00
17862717--17862769	26	2.0	26	92	0	88	28	22	20	28	1.99
17863614--17863665	26	2.0	26	88	0	77	30	19	23	26	1.98
17866985--17867037	26	2.0	26	92	0	88	30	18	24	26	1.98
17864728--17868629	895	4.4	890	85	5	4974	25	23	24	26	2.00
17867884--17867934	26	2.0	26	84	0	66	29	11	25	33	1.91
17869271--17869323	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17870884--17870936	26	2.0	26	96	0	97	28	20	24	26	1.99
17872681--17872733	26	2.0	26	96	0	97	26	18	26	28	1.98
17873581--17873633	26	2.0	26	92	0	88	28	20	22	28	1.99
17870143--17884139	880	15.8	902	86	4	17771	25	23	25	25	2.00
17875360--17875412	26	2.0	26	100	0	106	26	20	26	26	1.99
17876249--17876301	26	2.0	26	96	0	97	26	18	26	28	1.98
17877133--17877182	25	2.0	25	96	0	91	28	18	26	28	1.98
17878027--17878077	26	2.0	26	84	0	66	29	11	23	35	1.90
17879781--17879833	26	2.0	26	96	0	97	26	18	26	28	1.98
17880648--17880703	26	2.2	26	93	0	94	26	17	23	32	1.97
17883282--17883360	26	3.0	26	96	0	140	27	20	25	26	1.99
17884565--17884617	26	2.0	26	96	0	97	26	18	26	28	1.98
17887820--17887870	26	2.0	26	92	0	84	25	17	27	29	1.98
17888726--17888778	26	2.0	26	100	0	106	26	24	22	26	2.00
17886967--17891502	907	5.1	902	88	2	6152	25	24	24	25	2.00
17889633--17889685	26	2.0	26	96	0	97	28	20	24	26	1.99
17889862--17889886	12	2.1	12	100	0	50	8	28	64	0	1.22
17892154--17892206	26	2.0	26	96	0	97	26	18	26	28	1.98
17893040--17893090	26	2.0	26	96	0	93	29	17	25	27	1.98
17891444--17894137	886	3.0	883	85	4	3525	24	24	25	25	2.00
17893942--17893994	26	2.0	26	85	0	70	26	18	26	28	1.98
17896347--17896418	26	2.8	26	97	0	135	29	19	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17897269--17897327	26	2.3	26	88	5	95	25	18	27	28	1.98
17898145--17898197	26	2.0	26	92	0	88	28	18	24	28	1.98
17899035--17899087	26	2.0	26	100	0	106	30	20	22	26	1.98
17897913--17910688	896	14.4	899	85	3	16370	25	24	25	25	2.00
17901540--17901573	15	2.3	15	100	0	68	23	47	23	5	1.73
17901669--17901721	26	2.0	26	96	0	97	26	18	26	28	1.98
17903467--17903519	26	2.0	26	92	7	90	26	16	26	30	1.97
17904347--17904399	26	2.0	26	92	0	88	28	18	24	28	1.98
17905248--17905300	26	2.0	26	88	0	79	30	18	22	28	1.98
17906136--17906188	26	2.0	26	89	7	81	28	20	26	24	1.99
17907033--17907085	26	2.0	26	92	0	88	26	20	26	26	1.99
17894173--17910688	902	18.5	899	85	4	20833	25	24	24	25	2.00
17907929--17907981	26	2.0	26	100	0	106	26	20	26	26	1.99
17908826--17908876	26	2.0	26	92	0	84	31	19	23	25	1.98
17909721--17909773	26	2.0	26	100	0	106	26	20	26	26	1.99
17910604--17910656	26	2.0	26	85	0	70	28	18	22	30	1.98
17912239--17912289	26	2.0	26	92	0	84	29	17	29	23	1.97
17910630--17914284	899	4.1	892	86	4	4948	24	24	25	25	2.00
17913129--17913207	26	3.0	25	89	7	113	29	18	22	29	1.98
17914054--17914106	26	2.0	26	100	0	106	26	20	26	26	1.99
17914761--17914813	26	2.0	26	96	0	97	24	20	26	28	1.99
17915666--17915718	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17914309--17920915	881	7.4	898	85	3	8303	25	23	24	26	2.00
17919240--17919292	26	2.0	26	92	7	90	28	24	22	24	2.00
17920119--17920170	26	2.0	26	96	0	95	26	17	23	32	1.96
17921684--17921733	26	1.9	26	91	0	82	26	18	28	28	1.98
17924258--17924310	26	2.0	26	100	0	106	26	20	26	26	1.99
17922911--17925062	894	2.4	894	88	2	3172	25	24	24	25	2.00
17925902--17925956	26	2.2	25	90	3	83	27	16	25	30	1.96
17926796--17926848	26	2.0	26	88	0	79	30	20	20	28	1.98
17928555--17928605	26	2.0	26	88	0	75	29	17	23	29	1.97
17925059--17933027	890	8.9	889	83	6	8837	25	24	24	25	2.00
17930226--17930258	11	3.0	11	90	0	57	21	36	27	15	1.93
17931236--17931288	26	2.0	26	92	0	88	28	20	26	24	1.99
17932128--17932207	26	3.1	26	92	0	124	28	15	23	32	1.95
17934553--17934605	26	2.0	26	96	0	97	24	20	26	28	1.99
17933046--17936225	883	3.6	875	86	4	4200	25	23	24	26	2.00
17935430--17935482	26	2.0	26	96	0	97	26	18	26	28	1.98
17936953--17937005	26	2.0	26	100	0	106	26	16	26	30	1.97
17936303--17941010	885	5.3	861	84	6	5444	25	23	24	26	2.00
17938699--17938751	26	2.0	26	88	0	79	28	18	22	30	1.98
17939596--17939646	26	2.0	26	96	0	93	27	19	23	29	1.98
17940486--17940538	26	2.0	26	100	0	106	26	20	26	26	1.99
17941825--17942542	359	2.0	359	90	2	1147	27	17	20	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17942823--17942873	26	2.0	26	92	0	84	27	17	25	29	1.98
17944575--17944624	26	1.9	26	91	0	82	34	20	24	22	1.97
17945248--17945300	26	2.0	26	96	0	97	26	20	24	28	1.99
17947899--17947951	26	2.0	26	85	7	72	28	15	24	32	1.95
17948759--17948837	26	3.0	26	98	0	149	26	17	26	29	1.98
17949689--17949741	26	2.0	26	96	0	97	28	20	24	26	1.99
17948103--17950623	908	2.8	903	86	3	3257	24	24	24	26	2.00
17951319--17951369	26	2.0	26	88	0	75	31	17	25	25	1.97
17953087--17953139	26	2.0	26	92	0	88	30	18	24	26	1.98
17952211--17958471	890	7.0	899	86	3	8459	24	24	25	25	2.00
17954892--17954944	26	2.0	26	96	0	97	28	20	24	26	1.99
17956662--17956714	26	2.0	26	100	0	106	26	16	26	30	1.97
17957556--17957608	26	2.0	26	96	0	97	26	18	26	28	1.98
17950577--17958471	905	8.8	890	85	4	10088	24	24	25	25	2.00
17959294--17959346	26	2.0	26	92	0	88	26	18	24	30	1.98
17960180--17960232	26	2.0	26	88	0	79	26	18	26	28	1.98
17963477--17963511	17	2.1	17	94	0	61	34	51	8	5	1.56
17964578--17964627	26	1.9	26	95	0	91	30	20	28	22	1.98
17965477--17965529	26	2.0	26	96	0	97	26	18	24	30	1.98
17960639--17966395	901	6.5	900	84	5	7047	25	24	24	25	2.00
17967643--17967693	26	2.0	26	96	0	93	29	21	25	23	1.99
17968543--17971905	877	3.8	875	84	4	4134	25	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17970286--17970338	26	2.0	26	96	0	97	26	18	26	28	1.98
17971837--17971973	68	2.0	68	95	0	247	29	23	28	18	1.98
17973021--17973070	26	1.9	26	87	0	73	30	18	26	26	1.98
17973807--17973885	26	3.0	25	88	3	104	32	18	21	26	1.97
17974736--17974785	26	1.9	26	87	0	73	30	18	26	26	1.98
17975523--17975594	26	2.8	25	91	4	108	31	19	22	26	1.97
17977357--17977409	26	2.0	26	92	0	88	26	16	26	30	1.97
17978242--17978294	26	2.0	26	88	0	79	28	16	24	30	1.97
17974889--17980937	926	6.7	895	85	4	7600	25	23	24	26	2.00
17980027--17980079	26	2.0	26	88	0	79	30	22	22	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117