genome.fa.s90.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  54  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12235417--12235474	21	2.7	21	76	15	64	41	0	0	58	0.98
12235772--12235806	2	17.5	2	100	0	70	51	0	0	48	1.00
12236665--12236711	21	2.2	23	82	17	66	21	0	2	76	0.89
12236667--12236711	11	4.4	10	86	5	56	20	0	2	77	0.87
12236667--12236711	22	2.2	19	88	11	63	20	0	2	77	0.87
12237768--12237797	10	3.1	10	95	4	53	36	0	0	63	0.95
12239690--12239743	6	8.8	6	89	2	81	77	0	5	16	0.94
12240252--12240325	7	10.9	7	71	18	50	2	0	17	79	0.84
12240253--12240325	19	3.6	20	76	10	60	2	0	16	80	0.82
12240254--12240319	6	10.5	6	76	15	62	3	0	16	80	0.84
12240516--12240670	35	4.4	36	74	11	117	51	14	18	15	1.76
12240516--12240723	70	3.0	70	66	10	154	50	14	19	15	1.78
12240516--12240781	140	1.9	140	81	3	320	49	13	21	16	1.79
12240989--12241258	104	2.6	103	75	8	260	52	12	17	18	1.75
12241286--12241396	35	3.2	35	79	5	100	57	13	15	13	1.65
12241252--12241552	139	2.2	139	77	4	320	50	11	19	18	1.76
12241334--12241623	104	2.8	104	75	5	237	48	13	20	17	1.81
12241452--12241644	104	1.9	104	82	4	246	48	11	21	18	1.80
12241901--12241955	22	2.5	23	79	8	69	21	20	29	29	1.98
12242077--12242168	23	4.0	23	91	0	148	29	21	21	27	1.99
12242992--12243059	27	2.5	27	97	0	127	54	8	11	25	1.65
12251367--12251413	21	2.2	23	82	17	66	21	0	2	76	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12251369--12251413	11	4.4	10	86	5	56	20	0	2	77	0.87
12251369--12251413	22	2.2	19	88	11	63	20	0	2	77	0.87
12255356--12255385	14	2.2	13	94	5	51	73	0	0	26	0.84
12255356--12255401	8	5.8	8	80	19	60	71	0	2	26	0.97
12262708--12263107	142	2.8	144	77	7	384	40	12	12	34	1.81
12263805--12264224	50	8.3	50	82	6	436	35	18	13	32	1.90
12263815--12264216	104	4.0	100	81	5	420	36	19	13	31	1.90
12263815--12264193	154	2.5	149	82	4	440	35	19	13	30	1.91
12264402--12264445	22	2.0	23	90	4	72	43	9	15	31	1.79
12265258--12265602	176	2.0	176	90	1	541	32	23	9	34	1.87
12280051--12280102	13	3.7	13	79	10	50	34	0	5	59	1.21
12280060--12280102	18	2.5	18	81	7	54	34	0	4	60	1.17
12280143--12280185	3	14.3	3	90	0	59	32	6	0	60	1.23
12288741--12288790	19	2.8	17	77	11	55	34	0	24	42	1.55
12289247--12289272	3	8.7	3	100	0	52	34	30	0	34	1.58
12290280--12290308	12	2.4	12	100	0	58	27	0	6	65	1.18
12295103--12295264	33	4.9	33	80	7	116	35	18	9	36	1.84
12295305--12295484	33	5.5	33	74	10	129	29	11	19	39	1.87
12295264--12295545	33	8.5	33	75	9	121	28	10	20	40	1.86
12295646--12295911	33	8.2	32	76	11	186	28	12	20	37	1.90
12295646--12295924	66	4.3	67	76	10	240	27	13	20	38	1.90
12295693--12295940	33	7.7	32	76	13	181	27	12	21	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12295693--12295935	128	1.9	128	84	5	330	27	13	21	37	1.91
12296460--12296503	13	3.3	13	76	17	54	38	2	0	59	1.10
12296518--12296561	3	14.7	3	90	0	70	34	27	0	38	1.57
12297677--12297720	23	1.9	24	90	9	74	18	0	13	68	1.22
12297955--12298171	95	2.3	95	77	7	226	50	5	11	32	1.62
12299066--12299090	3	8.3	3	100	0	50	36	0	0	64	0.94
12307997--12308023	2	13.5	2	100	0	54	51	0	0	48	1.00
12311109--12311207	50	2.0	50	94	4	173	20	10	12	57	1.63
12312663--12312717	18	3.2	16	78	16	58	74	1	3	20	1.06
12312658--12312707	17	2.9	19	77	19	56	72	2	0	26	0.96
12314707--12314775	4	17.8	4	71	16	56	55	0	0	44	0.99
12314708--12314775	23	2.7	26	78	13	72	55	0	0	44	0.99
12314706--12314775	31	2.3	31	100	0	140	55	0	0	44	0.99
12316391--12316430	16	2.3	18	83	12	57	42	0	2	55	1.13
12316963--12316991	2	14.5	2	100	0	58	51	0	0	48	1.00
12319855--12319916	24	2.5	25	84	2	72	53	11	3	32	1.53
12320051--12320114	31	2.0	32	87	3	94	50	12	7	29	1.68
12320282--12320323	20	2.1	20	91	8	68	71	4	4	19	1.22
12320294--12320385	45	2.0	45	81	8	107	73	4	4	17	1.15
12321551--12321823	86	3.2	85	78	7	268	37	18	11	32	1.87
12321592--12321797	42	4.8	42	77	13	179	38	18	11	32	1.86
12322161--12322206	23	2.0	22	88	12	67	36	6	28	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12331205--12331245	12	3.4	12	96	0	73	17	58	21	2	1.50
12331205--12331245	6	6.8	6	82	0	55	17	58	21	2	1.50
12331295--12331352	16	3.7	16	79	2	64	60	1	0	37	1.07
12331297--12331341	8	5.6	8	78	0	54	57	2	0	40	1.11
12331318--12331362	18	2.6	17	83	13	56	60	0	0	40	0.97
12331548--12331586	20	2.0	20	89	0	60	28	7	23	41	1.82
12334230--12334352	46	2.7	46	85	2	167	47	14	8	29	1.75
12334581--12334996	81	5.2	79	74	8	261	36	10	12	39	1.79
12334618--12335015	41	9.9	41	69	9	187	35	11	12	39	1.80
12334723--12334948	79	2.9	77	79	6	247	34	11	12	40	1.80
12334924--12335036	41	2.8	40	87	4	147	34	12	13	39	1.82
12336544--12336584	21	1.9	22	90	5	66	0	19	0	80	0.71
12337094--12337169	39	2.0	39	85	10	104	22	14	22	40	1.90
12337504--12337541	13	2.9	13	81	11	51	7	18	0	73	1.06
12339885--12339942	28	2.1	28	96	0	107	41	22	0	36	1.54
12341432--12341493	26	2.4	26	88	0	97	14	8	30	46	1.73
12341649--12341703	12	4.2	13	78	15	51	25	1	1	70	1.06
12341667--12341702	14	2.6	15	87	12	51	19	2	0	77	0.88
12343005--12343247	121	2.0	121	93	0	416	11	25	12	51	1.73
12343770--12343807	3	12.7	3	100	0	76	31	0	0	68	0.90
12345429--12345515	45	2.0	44	88	2	129	59	10	8	21	1.55
12346231--12346264	14	2.4	14	85	0	50	67	14	5	11	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12346479--12346558	6	13.3	6	71	18	60	78	0	3	17	0.89
12346460--12346558	22	4.5	22	75	16	82	77	0	6	16	0.95
12346489--12346551	16	3.7	16	78	14	63	79	0	3	17	0.86
12346450--12346558	7	15.0	7	71	22	66	77	0	5	17	0.96
12354777--12354815	18	2.2	17	86	4	51	23	17	10	48	1.78
12354992--12355030	17	2.2	18	90	4	62	23	5	0	71	1.05
12354981--12355038	25	2.4	25	82	8	66	22	5	0	72	1.04
12357397--12357445	21	2.2	22	85	7	64	10	0	6	83	0.80
12359043--12359088	23	2.0	22	84	12	58	65	15	6	13	1.46
12361130--12361170	19	2.1	20	90	4	66	75	7	2	14	1.12
12361135--12361176	19	2.2	19	86	4	57	76	4	7	11	1.15
12361854--12362005	66	2.3	66	79	4	164	52	14	15	17	1.75
12361916--12362252	121	2.8	120	78	4	327	46	13	20	18	1.83
12363300--12363349	25	2.0	25	96	0	91	2	4	0	94	0.38
12363321--12363365	19	2.3	19	84	3	54	8	8	0	82	0.85
12363300--12363349	1	50.0	1	87	0	73	2	4	0	94	0.38
12366383--12366454	37	2.0	36	81	8	83	52	15	11	20	1.72
12367759--12367805	19	2.5	19	96	0	85	80	4	2	12	0.94
12368682--12368875	3	66.3	3	72	12	109	58	5	4	31	1.41
12372390--12372506	18	6.6	17	71	12	58	41	13	12	31	1.82
12372377--12372444	34	1.9	36	88	8	104	45	16	10	27	1.79
12372553--12372626	17	4.3	17	75	10	69	37	12	22	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12372646--12372771	17	7.4	17	68	14	64	42	11	11	35	1.76
12372662--12372751	34	2.6	34	76	1	90	41	10	11	37	1.74
12372630--12372802	86	2.0	87	83	5	217	43	12	12	31	1.80
12372934--12373034	23	4.6	23	72	11	77	41	11	8	37	1.73
12372964--12373127	43	3.7	45	80	9	176	40	13	7	38	1.74
12380679--12380711	15	2.1	16	88	5	50	12	15	0	72	1.12
12380850--12380882	5	6.8	5	86	6	50	0	15	0	84	0.61
12380850--12380881	15	2.1	15	100	0	64	0	12	0	87	0.54
12382858--12382892	16	2.1	17	94	5	63	62	0	5	31	1.18
12382860--12382892	17	1.9	17	93	0	57	66	0	6	27	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117