genome.fa.s90.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  11  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3149900--3149932	2	17.0	2	93	6	59	51	0	48	0	1.00
3150367--3150394	2	14.0	2	100	0	56	0	50	0	50	1.00
3160023--3160051	14	2.0	15	93	6	51	27	3	6	62	1.37
3160040--3160084	22	2.0	22	91	8	74	44	4	4	46	1.43
3163532--3163900	180	2.0	181	84	3	492	28	23	11	36	1.90
3183163--3183188	13	2.0	13	100	0	52	23	15	30	30	1.95
3187636--3187696	21	2.9	21	76	13	63	37	0	4	57	1.20
3187740--3187817	21	3.8	21	64	16	54	23	6	10	60	1.52
3187735--3187814	41	2.0	40	85	2	106	23	6	10	60	1.52
3194887--3194922	2	18.0	2	100	0	72	50	0	0	50	1.00
3205724--3205761	17	2.2	18	85	4	51	2	5	7	84	0.86
3213588--3213634	3	16.0	3	91	4	78	29	0	0	70	0.88
3214185--3214504	39	8.3	38	79	4	275	43	23	9	24	1.83
3214144--3214577	78	5.7	78	78	7	293	42	21	11	24	1.86
3214185--3214504	117	2.8	116	83	3	374	43	23	9	24	1.83
3214480--3214610	33	3.8	32	73	16	118	40	19	14	25	1.89
3214289--3214611	73	4.3	72	78	9	272	41	22	11	24	1.87
3214698--3214866	40	4.3	40	87	4	193	42	18	13	26	1.86
3226382--3226430	3	16.3	3	100	0	98	34	0	0	65	0.93
3227225--3227273	12	3.9	12	84	7	53	16	2	12	69	1.28
3227272--3227314	3	15.0	3	85	9	63	30	0	2	67	1.03
3228591--3228743	39	4.0	39	81	4	168	22	8	22	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3228591--3228743	76	2.0	78	85	2	211	22	8	22	46	1.79
3229804--3229881	12	6.4	12	78	10	52	11	6	7	74	1.22
3229827--3229881	12	4.5	12	84	8	58	16	1	10	70	1.23
3229891--3229959	3	23.7	3	91	5	115	31	0	1	66	1.00
3235104--3235131	2	14.0	2	100	0	56	0	50	0	50	1.00
3246366--3246404	2	19.5	2	94	0	69	48	0	2	48	1.15
3249884--3249928	19	2.2	22	88	11	69	53	0	0	46	1.00
3250400--3250472	34	2.1	34	80	9	78	46	0	2	50	1.15
3251816--3251869	26	2.0	27	82	10	67	46	5	0	48	1.25
3259223--3259265	14	2.9	16	76	20	56	55	25	0	18	1.42
3260682--3260735	24	2.3	23	81	6	65	46	7	3	42	1.49
3277418--3277451	2	17.0	2	87	0	50	0	44	0	55	0.99
3284343--3284392	23	2.2	24	89	7	77	52	0	0	48	1.00
3284352--3284398	20	2.2	20	85	14	60	53	0	0	46	1.00
3289925--3290000	23	3.5	22	77	17	77	51	0	0	48	1.00
3289987--3290034	22	2.2	21	92	3	78	56	2	0	41	1.11
3295074--3295209	69	2.0	69	94	0	236	22	13	23	40	1.89
3301992--3302025	15	2.2	16	89	5	52	38	0	0	61	0.96
3302902--3302926	6	4.2	6	100	0	50	16	32	52	0	1.44
3305178--3305232	19	2.6	21	77	16	51	72	21	3	1	1.09
3305189--3305226	20	1.9	20	88	0	58	81	13	2	2	0.90
3306026--3306070	24	1.9	24	82	13	58	62	2	0	35	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3306351--3306533	8	23.4	8	66	16	80	46	30	1	21	1.61
3306355--3306492	48	2.9	47	91	5	215	47	28	2	21	1.62
3306330--3306608	16	17.7	15	69	16	147	48	30	1	20	1.57
3306354--3306544	31	6.1	30	73	12	145	48	29	1	20	1.59
3306430--3306539	30	3.5	30	74	10	105	47	32	1	18	1.59
3306354--3306544	15	12.3	15	70	19	92	48	29	1	20	1.59
3306547--3306579	14	2.3	15	89	5	50	57	33	0	9	1.30
3306591--3306676	30	2.8	30	76	10	77	44	26	1	27	1.62
3315118--3315243	58	2.2	58	100	0	252	34	19	13	33	1.90
3315880--3315922	22	2.0	22	85	0	59	32	20	16	30	1.95
3315788--3316119	109	3.0	109	81	3	366	22	18	17	41	1.90
3315902--3316316	197	2.1	198	81	5	484	22	20	17	39	1.92
3316099--3316767	110	6.1	108	82	4	739	23	19	17	39	1.92
3316131--3316767	220	2.9	220	85	0	880	22	20	17	39	1.92
3316099--3316780	330	2.1	329	82	3	836	23	19	17	39	1.92
3316626--3316669	22	2.0	22	95	0	79	29	22	15	31	1.95
3316729--3316774	23	2.0	23	91	0	74	26	21	23	28	1.99
3316878--3316957	40	2.0	40	90	0	124	35	17	10	37	1.83
3317042--3317080	3	13.0	3	88	0	60	61	0	2	35	1.10
3317480--3317529	26	2.0	24	84	7	64	78	16	6	0	0.95
3318007--3318119	56	2.0	56	98	0	217	39	11	7	41	1.68
3318747--3318782	2	18.5	2	94	5	65	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3319154--3319194	19	2.3	19	88	12	61	29	0	2	68	1.03
3320143--3320210	31	2.2	30	84	7	84	52	1	1	44	1.19
3320145--3320210	30	2.2	31	83	8	82	53	1	1	43	1.19
3322896--3322940	2	22.5	2	88	8	65	44	2	2	51	1.26
3330876--3330909	16	2.1	17	88	5	52	44	5	0	50	1.26
3333067--3333567	267	1.9	267	95	0	912	32	20	25	21	1.98
3333501--3333740	121	2.0	121	94	0	426	29	19	29	21	1.97
3339765--3339814	26	1.9	26	83	0	64	52	2	4	42	1.31
3348159--3348274	3	38.7	3	75	6	83	56	3	33	6	1.43
3352985--3353043	30	1.9	31	82	3	75	33	1	0	64	1.04
3364524--3364597	31	2.4	30	86	4	112	51	5	8	35	1.55
3365811--3365851	22	2.0	22	85	9	59	70	2	2	24	1.11
3368067--3368164	39	2.5	38	81	8	90	33	12	8	45	1.71
3368091--3368157	22	3.3	22	71	26	65	35	10	7	46	1.66
3368551--3368598	22	2.2	22	89	10	73	52	0	0	47	1.00
3375796--3375855	8	7.8	8	74	20	56	33	0	3	63	1.11
3375821--3375861	6	6.8	6	79	20	50	34	0	0	65	0.93
3375792--3375862	34	2.3	30	85	11	90	33	0	2	63	1.09
3375761--3375863	46	2.2	47	81	10	113	36	0	1	60	1.15
3382618--3382655	19	2.0	19	89	0	58	39	13	10	36	1.79
3387013--3387061	24	2.1	24	88	7	75	44	0	0	55	0.99
3389358--3389404	3	15.7	3	100	0	94	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3390275--3390327	23	2.3	23	83	0	61	75	9	9	5	1.18
3390773--3390827	13	4.4	13	81	6	60	12	0	7	80	0.91
3390780--3390826	25	1.9	25	86	4	69	14	0	8	76	1.01
3390834--3390862	3	9.7	3	100	0	58	31	0	0	68	0.89
3392257--3392285	14	2.0	15	93	6	51	55	3	0	41	1.17
3392385--3392465	34	2.4	34	80	12	96	50	0	2	46	1.14
3392399--3392447	15	3.0	15	80	14	53	51	0	2	46	1.12
3392527--3392599	28	3.0	23	78	18	92	46	0	0	53	1.00
3392543--3392606	15	4.2	15	74	13	60	45	0	0	54	0.99
3392527--3392606	18	4.6	18	68	14	69	45	0	0	55	0.99
3393810--3393844	15	2.3	15	95	0	61	25	60	0	14	1.35
3396785--3396885	29	3.5	28	75	7	96	35	2	0	60	1.19
3396775--3396886	30	3.8	29	77	9	102	37	3	0	58	1.22
3396830--3396897	30	2.3	30	84	0	91	44	4	0	51	1.21
3398390--3398420	2	15.5	2	100	0	62	51	0	0	48	1.00
3401259--3401323	18	3.7	18	81	10	71	41	3	4	50	1.38
3401661--3401713	15	3.6	14	82	5	52	47	0	1	50	1.12
3401676--3401713	15	2.4	16	91	8	69	44	0	0	55	0.99
3409437--3409471	15	2.3	15	100	0	70	37	8	11	42	1.72
3410127--3410163	9	4.1	9	89	0	56	24	2	43	29	1.68
3426067--3426100	14	2.4	14	90	9	52	47	0	0	52	1.00
3426965--3426999	17	2.0	17	88	5	52	45	0	8	45	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3427081--3427135	24	2.4	24	81	6	69	52	1	0	45	1.11
3427175--3427226	21	2.4	21	80	3	59	53	1	0	44	1.11
3440772--3440804	11	2.8	12	90	4	50	45	9	6	39	1.61
3446413--3446450	6	6.7	6	82	11	53	50	0	0	50	1.00
3446413--3446446	11	3.1	11	82	0	50	52	0	0	47	1.00
3446417--3446448	17	1.9	16	93	6	55	56	0	0	43	0.99
3446505--3446565	20	3.0	21	76	19	67	39	0	1	59	1.08
3446505--3446565	22	3.0	21	78	19	67	39	0	1	59	1.08
3459788--3459823	2	18.0	2	94	0	63	52	0	0	47	1.00
3461360--3461399	21	1.9	21	89	0	62	10	2	60	27	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117