genome.fa.s90.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  100  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18623229--18623281	26	2.0	26	96	0	97	26	18	26	28	1.98
18621629--18626815	898	5.8	894	86	3	6789	25	24	24	25	2.00
18624126--18624177	25	2.0	26	88	3	79	26	19	23	30	1.98
18625024--18625076	26	2.0	26	96	0	97	26	18	26	28	1.98
18626768--18627212	159	2.8	159	83	2	541	22	28	30	18	1.97
18627819--18627869	26	2.0	26	92	0	84	31	19	21	27	1.97
18628717--18628769	26	2.0	26	92	0	88	32	20	18	28	1.97
18629619--18629669	26	2.0	26	88	0	75	27	17	27	27	1.98
18631415--18631466	26	2.0	26	92	3	88	25	21	26	26	1.99
18633953--18633985	11	3.0	11	95	0	57	9	39	36	15	1.79
18634068--18634118	26	2.0	26	100	0	102	27	19	27	25	1.99
18634970--18635121	4	38.5	4	67	18	54	27	1	3	67	1.17
18634970--18635127	17	8.7	17	71	15	88	27	1	3	67	1.17
18635103--18635130	14	2.0	14	100	0	56	21	0	0	78	0.75
18635717--18635756	20	2.0	20	90	0	62	45	25	12	17	1.83
18636144--18636216	17	4.4	16	79	8	65	19	6	0	73	1.04
18636159--18636216	11	5.2	11	78	12	55	17	6	0	75	1.01
18636170--18636214	23	2.0	23	82	8	56	15	6	0	77	0.96
18636182--18636231	16	3.2	16	76	23	54	16	10	0	74	1.08
18636170--18636226	14	4.2	13	77	18	55	15	7	0	77	0.98
18636234--18636414	60	3.0	60	83	5	242	45	7	12	33	1.71
18640272--18640330	30	2.0	30	83	6	75	72	0	20	6	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18640306--18640361	13	3.9	13	80	19	51	78	0	17	3	0.89
18640283--18640362	21	3.8	20	80	12	81	76	0	18	5	0.97
18640305--18640367	17	3.6	17	75	10	56	76	0	20	3	0.93
18641610--18641901	40	7.1	40	87	8	372	23	15	23	37	1.93
18641610--18641901	81	3.5	82	87	6	405	23	15	23	37	1.93
18641911--18641964	1	54.0	1	77	0	54	88	11	0	0	0.50
18641912--18641957	12	3.7	12	88	8	65	89	10	0	0	0.50
18641914--18641964	21	2.3	21	86	10	66	88	11	0	0	0.52
18641912--18641963	27	2.0	27	92	3	88	88	11	0	0	0.52
18641911--18641964	9	6.2	9	81	14	69	88	11	0	0	0.50
18642166--18642307	4	35.5	4	69	19	52	29	2	2	66	1.15
18642168--18642313	20	8.2	18	70	19	69	30	2	2	65	1.15
18642266--18642313	3	14.7	3	83	12	51	33	0	0	66	0.92
18642163--18642313	16	9.6	16	72	16	81	29	1	1	66	1.14
18643197--18643223	8	3.4	8	100	0	54	11	0	11	77	0.99
18643244--18643283	17	2.4	16	84	8	53	22	5	0	72	1.04
18643270--18643327	14	4.2	14	76	8	57	13	8	1	75	1.10
18643335--18643629	58	5.0	58	87	5	414	44	8	12	34	1.72
18643335--18643629	118	2.5	117	88	4	441	44	8	12	34	1.72
18643420--18643511	28	3.1	28	62	27	64	40	6	16	36	1.74
18645116--18645167	26	2.0	26	96	0	95	26	17	26	28	1.97
18644126--18649258	895	5.7	898	86	4	6884	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18646914--18646966	26	2.0	26	88	0	79	28	20	22	28	1.99
18650826--18650881	26	2.2	26	93	0	94	26	17	25	30	1.97
18651710--18651762	26	2.0	26	85	7	72	30	18	20	30	1.97
18652597--18652649	26	2.0	26	92	0	88	28	22	24	24	2.00
18650259--18653326	887	3.5	879	85	5	3944	25	23	23	27	2.00
18654184--18654237	26	2.1	26	92	0	90	29	24	22	24	1.99
18655079--18655131	26	2.0	26	89	7	81	28	24	20	26	1.99
18653327--18656025	897	3.0	895	87	2	3761	25	24	25	25	2.00
18656215--18656268	26	2.0	27	92	3	92	27	18	25	27	1.98
18657112--18657163	26	2.0	25	92	3	86	28	17	26	26	1.97
18657992--18658044	26	2.0	26	92	0	88	28	18	24	28	1.98
18656039--18659012	881	3.3	884	84	4	3703	25	24	25	24	2.00
18660046--18660097	26	2.0	25	85	3	68	28	21	23	26	1.99
18660926--18660978	26	2.0	26	92	0	88	26	20	26	26	1.99
18659030--18662631	887	4.0	886	86	4	4697	25	24	24	25	2.00
18663521--18663573	26	2.0	26	96	0	97	28	20	24	26	1.99
18664363--18664413	26	2.0	26	96	0	93	29	19	25	25	1.99
18666007--18666056	26	1.9	26	91	0	82	28	18	28	26	1.98
18666907--18666959	26	2.0	26	96	0	97	26	18	26	28	1.98
18664946--18667690	889	3.1	887	87	2	3797	25	24	24	26	2.00
18667829--18667952	21	5.8	20	69	26	69	29	1	3	65	1.18
18667898--18667954	17	3.2	17	82	12	53	31	1	1	64	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18668909--18668950	4	10.8	4	82	5	50	16	0	4	78	0.91
18668985--18669032	17	2.8	17	78	9	53	12	6	2	79	1.01
18668985--18669042	14	4.2	14	76	8	57	13	6	1	77	1.05
18669008--18669047	14	2.5	17	73	23	50	15	10	0	75	1.05
18669053--18669285	118	2.0	119	91	4	382	44	8	12	33	1.73
18669050--18669285	58	4.0	58	86	7	325	44	8	12	33	1.73
18673141--18673174	14	2.2	16	85	15	54	79	0	20	0	0.73
18673145--18673177	14	2.3	15	94	5	59	81	0	18	0	0.68
18673118--18673185	11	6.0	11	71	19	50	75	0	20	4	0.98
18674442--18674735	41	7.1	41	90	5	434	22	16	24	36	1.94
18674442--18674735	83	3.6	82	89	6	445	22	16	24	36	1.94
18674743--18674797	1	55.0	1	77	0	56	89	9	1	0	0.57
18674746--18674797	9	5.7	9	82	13	70	88	9	1	0	0.59
18674744--18674797	28	2.0	27	92	3	90	88	9	1	0	0.58
18674745--18674803	10	6.2	10	80	11	61	84	10	3	1	0.80
18675009--18675150	10	13.9	10	70	19	71	28	1	2	67	1.13
18675013--18675149	21	6.6	20	71	24	72	28	1	2	67	1.14
18675081--18675136	17	3.1	18	80	17	55	32	1	1	64	1.14
18675751--18675788	20	1.9	20	84	10	51	44	26	13	15	1.83
18676211--18676268	14	4.2	14	76	8	57	13	6	1	77	1.05
18676234--18676273	14	2.5	17	73	23	50	15	10	0	75	1.05
18676276--18676571	59	5.0	59	84	6	393	44	7	13	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18676361--18676452	28	3.1	28	62	27	64	40	6	16	36	1.74
18677143--18677195	26	2.0	26	92	7	90	26	16	26	30	1.97
18678900--18678952	26	2.0	26	96	0	97	26	18	26	28	1.98
18679795--18679847	26	2.0	26	100	0	106	26	20	26	26	1.99
18680593--18680642	12	4.2	12	89	0	82	36	16	32	16	1.90
18680591--18680638	24	2.0	24	100	0	96	33	16	33	16	1.92
18680885--18680937	26	2.0	26	96	0	97	26	18	26	28	1.98
18682661--18682713	26	2.0	26	96	0	97	26	18	26	28	1.98
18680655--18685195	901	5.1	896	84	5	5589	24	24	25	25	2.00
18689355--18689406	26	2.0	26	92	0	86	26	15	23	34	1.94
18690256--18690308	26	2.0	26	96	0	97	26	18	26	28	1.98
18691160--18691210	26	2.0	26	100	0	102	31	15	25	27	1.96
18685199--18694611	898	10.5	896	81	6	10034	25	23	24	26	2.00
18692053--18692105	26	2.0	26	100	0	106	26	20	26	26	1.99
18693899--18693951	26	2.0	26	96	0	97	26	18	26	28	1.98
18697275--18697327	26	2.0	26	92	0	88	30	18	24	26	1.98
18699041--18699093	26	2.0	26	92	0	88	26	22	22	28	1.99
18703521--18703571	26	2.0	26	100	0	102	27	19	27	25	1.99
18695074--18710668	875	17.6	898	84	5	18651	25	24	24	25	2.00
18705284--18705336	26	2.0	26	92	7	90	28	20	26	24	1.99
18708151--18708177	8	3.4	8	100	0	54	11	25	62	0	1.28
18708827--18708879	26	2.0	26	92	0	88	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18710592--18710644	26	2.0	26	100	0	106	26	20	26	26	1.99
18711334--18711389	26	2.2	26	96	0	103	28	17	25	28	1.98
18712221--18712273	26	2.0	26	92	0	88	26	22	22	28	1.99
18713116--18713194	26	3.0	26	94	0	131	27	17	25	29	1.98
18714048--18714097	26	1.9	26	95	0	91	30	18	26	26	1.98
18714934--18714985	26	2.0	26	92	0	86	28	15	26	28	1.96
18715829--18715881	26	2.0	26	92	0	88	28	18	24	28	1.98
18716715--18716767	26	2.0	26	96	0	97	28	20	24	26	1.99
18717610--18717662	26	2.0	26	88	0	79	30	18	22	28	1.98
18718508--18718558	26	2.0	26	88	0	75	25	19	27	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117