genome.fa.s90.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  102  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18854884--18854936	26	2.0	26	96	0	97	26	18	26	28	1.98
18856607--18856666	26	2.4	26	76	15	72	26	15	26	31	1.95
18859282--18859334	26	2.0	26	100	0	106	26	20	26	26	1.99
18860182--18860234	26	2.0	26	96	0	97	26	18	26	28	1.98
18855215--18862556	900	8.2	902	85	3	9362	25	24	24	26	2.00
18861082--18861134	26	2.0	26	92	0	88	28	15	24	32	1.95
18861965--18862017	26	2.1	26	89	6	83	30	20	22	26	1.98
18862604--18862656	26	2.0	26	100	0	106	26	20	26	26	1.99
18861924--18863187	631	2.0	631	85	2	1714	25	23	24	27	2.00
18865205--18865257	26	2.0	26	96	0	97	26	18	26	28	1.98
18867897--18867949	26	2.0	26	96	0	97	26	18	26	28	1.98
18868806--18868858	26	2.0	26	92	0	88	24	18	28	28	1.98
18869680--18869732	26	2.0	26	100	0	106	26	20	26	26	1.99
18870564--18870616	26	2.0	26	82	7	63	28	16	22	32	1.96
18871295--18871346	26	2.0	26	96	0	95	26	17	26	28	1.97
18872852--18872930	26	3.0	25	90	7	122	29	20	22	27	1.98
18873785--18873837	26	2.0	26	96	0	97	26	18	26	28	1.98
18874679--18874731	26	2.0	26	96	0	97	28	18	26	26	1.98
18876453--18876504	26	2.0	26	88	3	79	26	19	23	30	1.98
18875583--18886494	897	12.2	894	84	5	12864	25	24	25	25	2.00
18879135--18879187	26	2.0	26	96	0	97	28	20	24	26	1.99
18881789--18881841	26	2.0	26	88	0	79	24	24	28	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18885347--18885399	26	2.0	26	96	0	97	28	20	24	26	1.99
18886251--18886300	26	1.9	26	95	0	91	28	18	30	24	1.97
18886346--18886716	171	2.2	171	83	0	465	20	27	33	18	1.96
18887322--18887373	26	2.0	26	92	0	86	25	17	26	30	1.97
18888230--18888280	26	2.0	26	88	0	75	31	15	29	23	1.95
18889125--18889203	26	3.0	26	90	0	131	29	18	22	29	1.98
18890051--18890103	26	2.0	26	88	0	79	26	18	26	28	1.98
18890945--18890996	25	2.0	26	92	3	88	25	19	26	28	1.98
18893942--18893994	26	2.0	26	96	0	97	26	18	26	28	1.98
18894644--18894696	26	2.0	26	92	0	88	28	20	22	28	1.99
18897283--18897335	26	2.1	25	92	3	88	30	18	24	26	1.98
18898182--18898234	26	2.0	26	100	0	106	30	20	22	26	1.98
18899060--18899112	26	2.0	26	88	0	79	26	18	26	28	1.98
18899780--18899826	24	2.0	24	95	0	85	31	44	8	14	1.76
18901209--18901260	26	2.0	26	88	0	77	30	19	21	28	1.97
18899826--18915068	896	17.0	894	86	3	18869	25	23	24	25	2.00
18904747--18904799	26	2.0	26	88	0	79	28	16	26	28	1.97
18905643--18905695	26	2.0	26	92	0	88	26	16	26	30	1.97
18906550--18906602	26	2.0	26	88	0	79	30	18	22	28	1.98
18907268--18907293	13	2.0	13	100	0	52	30	46	15	7	1.74
18907471--18907520	26	1.9	26	95	0	91	28	18	28	26	1.98
18908359--18908408	26	1.9	26	91	0	82	28	22	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18909264--18909316	26	2.0	26	100	0	106	26	20	26	26	1.99
18911918--18911969	26	2.0	25	92	3	86	26	19	25	28	1.98
18912818--18912870	26	2.0	26	88	0	79	30	18	22	28	1.98
18910148--18915068	900	5.5	903	87	2	6307	25	23	24	26	2.00
18913723--18913775	26	2.0	26	96	0	97	26	15	26	32	1.95
18914612--18914664	26	2.0	26	96	0	97	26	20	24	28	1.99
18916388--18916440	26	2.0	26	92	0	88	26	20	24	28	1.99
18917283--18917332	26	1.9	26	91	0	82	32	16	26	26	1.96
18918490--18918542	26	2.0	26	88	0	79	30	18	22	28	1.98
18918004--18918606	313	1.9	312	87	1	877	24	31	25	18	1.98
18918316--18925866	903	8.4	903	83	5	9004	25	24	24	25	2.00
18920291--18920343	26	2.0	26	92	7	90	26	16	26	30	1.97
18922080--18922132	26	2.0	26	92	7	90	26	16	26	30	1.97
18922984--18923036	26	2.0	26	92	0	88	24	18	26	30	1.98
18926959--18927011	26	2.0	26	88	0	79	28	18	22	30	1.98
18928545--18928597	26	2.0	26	92	0	88	28	22	22	26	1.99
18929375--18929427	26	2.0	26	96	0	97	26	18	26	28	1.98
18929874--18929926	26	2.0	26	88	0	79	26	18	26	28	1.98
18930775--18930827	26	2.0	26	88	0	79	30	18	22	28	1.98
18931601--18931653	26	2.0	26	92	0	88	26	16	26	30	1.97
18932517--18932569	26	2.0	26	85	0	70	30	16	22	30	1.96
18933392--18933452	26	2.4	26	75	20	67	26	16	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18936070--18936122	26	2.0	26	100	0	106	26	20	26	26	1.99
18936973--18937025	26	2.0	26	96	0	97	28	20	24	26	1.99
18937872--18937924	26	2.0	26	89	7	81	28	16	24	30	1.97
18931109--18939357	903	9.2	903	85	4	10692	25	24	24	26	2.00
18938766--18938826	26	2.4	26	94	5	108	26	22	24	26	2.00
18939405--18939457	26	2.0	26	100	0	106	26	20	26	26	1.99
18941018--18941067	26	1.9	26	95	0	91	28	18	28	26	1.98
18940270--18948225	873	8.9	889	85	4	10010	25	23	25	25	2.00
18942780--18942830	26	2.0	26	96	0	93	27	17	27	27	1.98
18945481--18945533	26	2.0	26	92	0	88	24	20	26	28	1.99
18942684--18948225	903	6.2	899	86	3	7275	25	24	25	25	2.00
18946384--18946436	26	2.0	26	92	0	88	24	18	28	28	1.98
18948141--18948193	26	2.0	26	88	0	79	28	16	24	30	1.97
18949727--18949777	26	2.0	26	88	0	75	31	17	27	23	1.97
18950616--18950694	26	3.0	26	88	0	122	27	20	22	29	1.98
18948167--18964189	899	18.1	893	84	5	17423	25	24	24	25	2.00
18951542--18951594	26	2.0	26	96	0	97	26	18	26	28	1.98
18952439--18952491	26	2.0	26	92	0	88	30	18	24	26	1.98
18954195--18954245	26	2.0	26	88	0	75	29	19	23	27	1.98
18955098--18955149	26	2.0	25	88	3	77	26	19	23	30	1.98
18956424--18956475	26	2.0	26	88	7	79	19	9	13	57	1.63
18957778--18957830	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18962171--18962223	26	2.0	26	96	0	97	24	20	26	28	1.99
18963077--18963129	26	2.0	26	96	0	97	28	20	24	26	1.99
18964046--18964360	171	1.8	171	87	1	470	19	27	33	19	1.96
18964217--18971672	897	8.3	895	74	11	5839	25	24	25	24	2.00
18965915--18965967	26	2.0	26	88	0	79	22	18	28	30	1.98
18966821--18966873	26	2.0	26	92	0	88	28	22	24	24	2.00
18967721--18967770	26	1.9	26	95	0	91	30	20	28	22	1.98
18967747--18968173	171	2.6	167	82	7	478	22	27	33	16	1.95
18972573--18972625	26	2.0	26	92	0	88	24	20	26	28	1.99
18973293--18973386	26	3.6	26	91	0	152	30	18	19	31	1.95
18974238--18974290	26	2.0	26	92	0	88	28	18	26	26	1.98
18977038--18977090	26	2.0	26	88	0	79	30	18	22	28	1.98
18977761--18977807	24	2.0	24	95	0	85	31	44	8	14	1.76
18978292--18978345	26	2.1	26	89	0	81	31	12	22	33	1.92
18980080--18980131	26	2.0	26	84	0	68	28	13	25	32	1.93
18980948--18980998	26	2.0	26	96	0	93	29	15	25	29	1.96
18982738--18982790	26	2.0	26	92	0	88	28	20	22	28	1.99
18983531--18983563	11	3.0	11	100	0	66	9	36	36	18	1.82
18983644--18983696	26	2.0	26	92	0	88	28	18	24	28	1.98
18984546--18984595	26	1.9	26	91	0	82	26	20	28	26	1.99
18985436--18985485	26	1.9	26	91	0	82	28	22	26	24	1.99
18986344--18986420	26	3.0	26	90	3	122	28	19	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18988138--18988190	26	2.0	26	88	0	79	30	20	20	28	1.98
18977807--18994381	901	18.5	889	83	6	16591	25	23	24	25	2.00
18989902--18989961	26	2.4	26	91	5	97	25	18	26	30	1.98
18990811--18990863	26	2.0	26	92	0	88	28	18	24	28	1.98
18991712--18991764	26	2.0	26	92	0	88	26	16	26	30	1.97
18992600--18992652	26	2.0	26	92	0	88	26	18	24	30	1.98
18993488--18993540	26	2.0	26	100	0	106	26	20	26	26	1.99
18994287--18994319	11	3.0	11	95	0	57	15	36	30	18	1.91
18994536--18994591	26	2.2	26	90	0	85	28	19	21	30	1.98
18995439--18995491	26	2.0	26	96	0	97	28	20	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117