genome.fa.s90.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  74  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15730655--15731695	360	2.9	352	78	8	1052	41	7	9	41	1.66
15730668--15731749	180	6.1	174	73	9	618	41	7	9	41	1.65
15733967--15734005	18	2.2	17	86	13	53	46	2	5	46	1.38
15731746--15736204	181	24.8	180	76	6	3446	40	8	10	41	1.69
15734516--15734548	18	1.9	17	88	11	50	48	6	6	39	1.53
15736473--15736517	19	2.5	19	82	10	60	37	13	4	44	1.64
15736485--15737115	181	3.5	180	80	6	681	38	11	8	41	1.72
15737147--15739728	181	14.3	180	71	10	1282	40	10	8	40	1.70
15737147--15738490	361	3.7	359	77	9	1062	40	10	8	39	1.71
15738499--15738572	36	2.1	36	97	0	139	48	5	6	39	1.53
15739030--15739058	14	2.0	15	93	6	51	37	6	6	48	1.57
15739314--15739650	182	1.9	182	80	3	401	40	10	8	41	1.69
15739815--15741200	179	7.7	180	74	8	828	38	7	10	43	1.67
15740340--15741187	181	4.7	181	76	5	470	38	8	9	43	1.67
15741231--15742662	181	8.1	180	75	9	1010	40	8	9	40	1.68
15742084--15742387	162	1.9	158	79	6	344	40	8	11	39	1.71
15742676--15747254	181	25.2	179	68	14	1357	40	8	10	41	1.69
15742676--15744389	360	4.8	350	75	10	1196	39	8	10	41	1.70
15742739--15748302	361	15.2	356	69	14	1641	40	8	9	41	1.68
15744399--15748302	362	10.7	359	73	11	2059	40	8	9	41	1.68
15744399--15747254	181	15.9	181	74	8	1762	40	8	9	41	1.68
15747058--15747457	214	1.9	213	82	5	502	42	9	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15747266--15748302	181	5.6	177	72	11	525	40	8	9	41	1.67
15747266--15747790	180	2.9	180	79	5	495	41	8	8	41	1.66
15747764--15747809	19	2.4	19	100	0	92	47	6	4	41	1.49
15747588--15747990	200	2.0	200	82	0	491	40	7	9	41	1.66
15747404--15748143	381	1.9	380	81	4	884	41	7	9	41	1.67
15748295--15750031	180	9.8	179	71	12	555	40	7	9	42	1.66
15748671--15748726	18	3.1	20	73	23	61	39	5	14	41	1.68
15749441--15749755	168	1.9	167	81	7	388	39	7	11	42	1.68
15748583--15750032	528	2.8	520	78	8	1330	39	7	9	42	1.66
15750251--15753392	181	17.7	178	70	12	1035	40	8	8	42	1.65
15750629--15750661	15	2.2	15	89	10	50	33	0	3	63	1.10
15750435--15750859	182	2.4	179	81	6	473	40	6	7	45	1.58
15751256--15753366	358	5.9	360	73	10	1229	40	8	9	42	1.67
15751286--15753392	181	11.7	175	74	9	1141	40	8	8	42	1.67
15751237--15757062	539	10.9	535	70	12	2332	40	8	9	42	1.67
15751235--15754308	721	4.3	708	76	8	2271	40	8	9	42	1.67
15753416--15754309	181	4.9	180	76	5	748	40	8	8	42	1.67
15754315--15754830	257	2.0	257	94	0	906	42	9	9	39	1.68
15755059--15757062	181	11.3	180	75	8	1364	40	8	9	42	1.67
15755195--15756712	361	4.2	355	78	7	1220	40	8	9	41	1.67
15757330--15759111	181	9.9	181	78	6	1517	39	8	10	42	1.69
15757070--15759111	362	5.7	361	77	7	1673	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15759005--15759228	119	1.9	121	86	1	326	45	8	11	35	1.70
15759518--15760503	182	5.5	181	76	7	686	42	6	8	42	1.63
15759526--15760558	360	2.9	358	80	7	1008	41	6	8	42	1.62
15760696--15760737	20	2.2	20	86	4	59	52	2	7	38	1.42
15760896--15760989	35	2.7	35	98	0	179	29	8	11	50	1.69
15760933--15763226	543	4.2	540	78	5	1895	40	10	8	40	1.70
15760933--15768722	362	21.4	356	70	12	2774	41	10	8	40	1.69
15760596--15763333	181	15.2	175	72	10	1278	40	10	8	40	1.69
15760933--15763320	181	13.3	179	75	8	1489	40	10	8	40	1.70
15763343--15770473	712	10.0	710	73	10	3786	41	9	8	39	1.68
15763970--15768764	181	26.9	180	75	8	3293	41	10	8	39	1.68
15765172--15765204	18	1.9	17	88	11	50	39	6	6	48	1.53
15766699--15766731	16	2.1	16	88	11	50	51	6	3	39	1.42
15763343--15768749	717	7.6	711	75	9	3479	42	10	8	39	1.68
15768753--15770558	180	10.2	180	75	8	1179	41	9	8	40	1.69
15768741--15770554	359	5.1	353	73	10	1197	41	9	8	40	1.69
15771105--15771169	24	2.7	25	81	11	66	46	0	3	50	1.17
15772041--15772074	18	1.9	17	88	5	50	41	5	2	50	1.42
15773279--15773328	23	2.1	25	85	7	68	44	2	0	54	1.11
15774779--15774820	18	2.3	19	88	8	61	54	0	0	45	0.99
15774837--15774870	18	1.9	17	88	5	50	41	5	2	50	1.42
15775033--15775155	47	2.7	44	76	15	115	51	2	3	43	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15776061--15776110	23	2.1	25	85	7	68	44	2	0	54	1.11
15776689--15777316	181	3.5	178	81	5	642	39	8	9	42	1.68
15777491--15777543	22	2.4	22	84	9	63	49	1	1	47	1.23
15777512--15777572	16	3.5	18	76	19	67	45	1	1	50	1.21
15777750--15777798	15	3.2	14	78	18	53	48	2	0	48	1.12
15777853--15777880	3	9.3	3	100	0	56	32	0	0	67	0.91
15778008--15778055	18	2.8	17	76	17	53	47	0	0	52	1.00
15778677--15778721	22	2.0	23	91	4	74	40	0	2	57	1.11
15778715--15778762	24	2.0	24	84	8	62	50	2	2	45	1.25
15779107--15779141	18	1.9	18	88	0	52	40	2	2	54	1.30
15779806--15779881	26	2.8	27	77	16	77	55	0	0	44	0.99
15779880--15779913	18	1.9	17	88	5	50	41	5	2	50	1.42
15779929--15779978	22	2.2	23	78	3	57	40	0	8	52	1.31
15780770--15783463	541	5.0	540	79	6	2345	41	9	8	39	1.69
15780777--15783461	181	14.9	180	77	6	2034	41	10	8	39	1.69
15783534--15783976	179	2.5	175	76	8	435	42	8	7	41	1.63
15784023--15786248	359	6.2	354	75	9	1512	40	8	8	41	1.67
15785199--15785247	18	2.8	18	70	17	50	42	8	8	40	1.64
15784024--15786258	181	12.5	176	74	9	1406	40	8	8	41	1.67
15786226--15786284	25	2.4	25	97	0	109	54	11	10	23	1.67
15786050--15786465	207	2.0	207	79	7	452	43	8	9	38	1.68
15786480--15786512	18	1.9	17	88	11	50	48	9	9	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15786676--15788117	180	7.9	181	75	9	1015	40	7	9	42	1.66
15787033--15788117	182	6.0	181	76	8	897	39	7	10	42	1.67
15787033--15787854	358	2.3	361	81	5	925	39	6	10	43	1.65
15786701--15787864	358	3.2	357	78	8	921	41	6	9	42	1.64
15787982--15788432	157	2.9	157	80	4	437	40	7	11	39	1.71
15788043--15788457	155	2.7	153	76	9	419	41	7	11	39	1.70
15788303--15789425	181	6.2	180	79	5	1026	40	8	10	40	1.70
15788303--15791131	180	15.9	180	72	10	1276	39	8	10	41	1.70
15789276--15789579	154	2.0	154	86	1	421	39	7	8	45	1.63
15789533--15791124	358	4.4	358	75	7	1025	39	8	11	41	1.71
15791130--15795281	180	23.2	178	73	9	2655	41	10	8	39	1.70
15791130--15795281	361	11.6	359	75	8	2916	41	10	8	39	1.70
15795288--15798504	181	18.1	179	75	8	2236	41	10	8	39	1.70
15794864--15795777	496	1.8	498	85	4	1306	43	11	7	37	1.69
15795639--15795961	163	2.0	162	83	6	402	42	11	7	38	1.70
15796381--15798472	180	11.6	180	76	7	1662	41	10	8	39	1.69
15795288--15798504	539	6.0	535	76	8	2367	41	10	8	39	1.70
15798353--15798624	145	1.9	146	90	2	440	43	9	6	40	1.62
15798489--15799140	182	3.6	179	78	7	654	40	10	9	40	1.71
15799424--15801269	181	10.3	180	73	9	1008	41	9	8	39	1.70
15799147--15800341	540	2.2	527	79	5	1206	41	10	8	39	1.70
15799145--15801248	181	11.8	176	71	12	891	41	10	8	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15801147--15801416	148	1.8	147	84	2	371	45	10	6	37	1.64
15801299--15803616	181	13.0	180	76	7	1812	41	9	8	40	1.68
15801303--15810906	719	13.5	704	73	11	4536	41	10	8	40	1.69
15801303--15805787	537	8.4	530	76	9	2669	41	9	8	40	1.69
15803452--15804139	167	4.0	166	75	12	426	40	9	8	40	1.69
15803452--15803782	166	2.0	167	83	4	427	42	10	8	38	1.69
15803618--15806031	180	13.5	180	76	7	1907	41	9	8	40	1.69
15803618--15806078	356	6.9	359	76	8	1888	41	10	8	40	1.70
15805538--15805570	18	1.9	17	88	11	50	42	6	3	48	1.43
15799145--15810874	898	13.2	887	73	10	5689	41	10	8	40	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117