genome.fa.s90.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  2  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125718--125849	63	2.1	62	84	1	165	37	4	11	46	1.60
125675--125968	153	1.9	154	86	3	414	36	5	11	46	1.63
135352--135397	17	2.7	18	83	10	60	56	0	0	43	0.99
135360--135428	23	3.4	21	76	18	67	53	1	0	44	1.09
137372--137397	13	2.0	13	100	0	52	53	0	0	46	1.00
137799--137910	2	60.0	2	76	16	89	45	1	1	50	1.22
141510--141542	2	16.5	2	100	0	66	48	0	0	51	1.00
142185--142293	53	2.1	53	85	0	146	29	8	2	59	1.40
143173--143197	9	2.8	9	100	0	50	24	8	0	68	1.16
147099--147129	14	2.2	14	94	0	53	54	3	0	41	1.16
149234--149265	2	16.5	2	93	6	57	50	0	0	50	1.00
153101--153136	11	3.3	11	100	0	72	50	0	0	50	1.00
153040--153129	45	2.0	45	80	8	103	61	1	1	36	1.11
161534--161592	28	2.1	28	84	6	75	47	5	5	42	1.47
162089--162126	13	3.0	13	84	3	51	55	0	0	44	0.99
162104--162145	17	2.6	16	78	14	50	52	0	0	47	1.00
163015--163045	6	5.2	6	96	0	53	51	3	16	29	1.59
171256--171294	20	2.0	19	90	5	60	43	0	2	53	1.14
172236--172274	17	2.2	18	90	4	62	25	0	2	71	0.98
172385--172425	17	2.5	17	84	4	57	43	2	0	53	1.13
172405--172470	19	3.2	20	69	14	53	42	0	0	57	0.98
173066--173098	17	1.9	17	93	0	57	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173161--173209	21	2.4	19	78	18	53	40	4	4	51	1.40
176284--176321	8	5.0	8	87	12	62	63	0	0	36	0.95
176289--176322	14	2.4	14	100	0	68	64	0	0	35	0.94
177131--177188	23	2.4	25	80	13	68	50	5	0	44	1.24
179575--179610	2	18.0	2	100	0	72	50	0	0	50	1.00
179914--179940	2	13.5	2	100	0	54	0	51	0	48	1.00
184864--184888	2	12.5	2	100	0	50	48	0	0	52	1.00
199383--199430	16	3.1	16	82	14	64	27	14	10	47	1.76
209259--209536	141	2.0	136	91	4	450	45	3	6	44	1.46
209843--209876	13	2.7	12	86	13	50	50	0	2	47	1.16
218954--218979	3	8.7	3	100	0	52	30	0	0	69	0.89
220806--220852	2	23.5	2	100	0	94	0	48	0	51	1.00
239883--239925	12	3.5	13	82	17	56	27	0	0	72	0.85
240181--240214	17	2.0	17	100	0	68	35	5	11	47	1.65
240641--240690	23	2.1	25	85	7	68	42	14	8	36	1.74
240683--240746	31	2.1	30	85	2	83	50	6	7	35	1.57
241674--241699	2	13.0	2	100	0	52	50	0	50	0	1.00
245929--245984	2	28.0	2	100	0	112	0	50	0	50	1.00
246617--246669	25	2.1	25	100	0	106	18	26	20	33	1.96
256532--256562	2	16.0	2	93	6	55	48	0	0	51	1.00
258361--258418	16	3.3	19	77	20	63	46	1	0	51	1.11
259575--259603	15	1.9	15	100	0	58	62	0	3	34	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263432--263468	12	3.1	12	88	0	56	43	0	8	48	1.32
266619--266652	2	17.0	2	100	0	68	50	0	0	50	1.00
270116--270156	20	2.0	20	95	0	73	36	14	17	31	1.90
275827--275930	30	3.5	30	94	0	181	32	13	17	36	1.89
282821--282846	4	6.5	4	100	0	52	23	0	0	76	0.78
287797--287834	15	2.5	15	91	0	58	21	0	10	68	1.19
290085--290123	8	4.8	8	84	6	51	53	7	0	38	1.30
293225--293251	14	1.9	14	100	0	54	11	0	0	88	0.50
293226--293259	14	2.4	14	90	5	50	14	0	0	85	0.60
293551--293600	21	2.4	21	78	18	59	52	0	0	48	1.00
295551--295600	3	16.7	3	100	0	100	68	0	0	32	0.90
296527--296591	2	31.5	2	73	11	51	44	3	6	46	1.44
305701--305730	2	15.0	2	92	0	51	46	0	0	53	1.00
312625--312664	21	1.9	21	100	0	80	32	17	20	30	1.95
314482--314525	16	2.8	16	80	10	54	63	0	0	36	0.95
314913--314943	2	15.5	2	93	0	53	51	0	0	48	1.00
319257--319335	29	2.6	30	80	11	99	46	0	1	51	1.08
319307--319348	18	2.3	18	84	11	59	47	0	0	52	1.00
322255--322293	5	7.8	5	91	0	51	84	2	0	12	0.72
323219--323277	31	1.9	31	86	6	84	50	1	0	47	1.11
326893--326932	3	13.3	3	100	0	80	0	35	0	65	0.93
328745--328785	3	13.3	3	94	5	73	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328745--328782	19	2.0	19	100	0	76	31	0	0	68	0.90
330394--330442	3	16.3	3	100	0	98	32	0	0	67	0.91
362325--362365	21	2.0	21	85	9	57	46	0	0	53	1.00
364510--364540	1	31.0	1	93	0	53	3	0	96	0	0.21
366259--366379	30	4.0	30	91	0	170	23	40	7	28	1.82
378086--378116	16	1.9	16	93	0	53	87	3	0	9	0.66
378085--378119	16	2.4	14	86	13	52	88	2	0	8	0.61
380366--380397	2	16.0	2	93	0	55	46	0	0	53	1.00
381253--381288	2	18.0	2	100	0	72	0	50	0	50	1.00
381288--381315	2	14.0	2	100	0	56	50	0	0	50	1.00
385264--385608	171	2.0	171	98	0	663	24	18	22	35	1.95
388109--388332	111	2.0	111	94	0	394	35	9	12	41	1.77
388450--388489	20	2.0	21	85	5	55	47	7	10	35	1.65
391079--391261	91	2.0	90	92	1	303	21	21	13	42	1.88
397138--397203	32	2.0	33	85	2	89	34	3	12	50	1.55
397262--397298	20	2.0	19	85	15	51	35	16	10	37	1.83
397378--397548	94	1.8	94	87	0	252	36	9	14	39	1.79
404799--404841	13	3.4	13	77	6	52	65	4	0	30	1.13
404800--404842	12	3.5	12	78	6	50	62	4	0	32	1.15
413466--413496	2	15.5	2	100	0	62	48	0	0	51	1.00
416995--417364	167	2.2	165	86	1	499	36	15	16	31	1.91
422189--422251	12	5.4	11	77	11	54	76	6	3	14	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422212--422271	27	2.1	28	82	17	72	76	1	8	13	1.08
422709--422747	20	2.0	20	94	0	69	46	35	5	12	1.65
423121--423226	3	37.3	3	72	17	75	64	0	2	32	1.15
423128--423233	22	4.9	21	76	12	83	61	0	3	33	1.20
423137--423226	28	3.2	28	85	6	121	61	1	3	34	1.20
424061--424111	11	4.6	11	78	9	59	27	3	0	68	1.07
426915--426960	24	2.0	24	86	4	67	65	0	30	4	1.12
427345--427391	24	1.9	25	86	4	69	46	4	6	42	1.48
427712--427766	21	2.6	21	79	2	65	70	3	0	25	1.03
430447--430775	48	6.8	49	78	6	294	44	11	12	31	1.78
430448--430780	96	3.4	97	79	5	336	44	11	12	31	1.78
430762--430831	26	2.7	26	76	12	72	37	5	14	42	1.69
430762--430834	25	2.9	24	75	17	67	35	5	15	43	1.69
432680--432755	38	2.0	38	97	0	143	60	11	0	27	1.32
432692--432756	17	3.2	21	64	18	57	60	12	0	27	1.33
443040--443333	151	2.0	147	89	5	457	41	22	17	18	1.90
445417--445468	2	27.5	2	78	18	58	48	0	3	48	1.20
463131--463188	21	2.9	21	76	5	57	50	3	6	39	1.46
473506--473555	21	2.3	23	82	10	68	42	0	0	58	0.98
473562--473603	11	3.6	11	77	22	50	23	2	4	69	1.20
473555--473603	24	2.0	24	84	0	62	26	2	4	67	1.19
487267--487292	12	2.2	12	100	0	52	30	15	46	7	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490985--491032	24	2.0	25	83	4	62	25	4	8	62	1.41
492658--492698	21	2.0	21	90	0	64	21	2	4	70	1.18
494414--494473	5	12.6	5	79	10	54	50	0	1	48	1.11
494417--494492	14	5.4	14	75	0	71	47	0	1	51	1.09
494411--494481	19	3.5	19	68	22	54	46	0	1	52	1.09
494430--494492	28	2.2	28	100	0	126	44	0	0	55	0.99
494834--494858	13	1.9	13	100	0	50	40	0	4	56	1.18
497002--497040	20	2.0	20	84	0	51	5	20	10	64	1.44
501880--501936	21	2.6	22	84	13	73	40	1	0	57	1.09
505729--505979	123	2.0	122	92	0	412	41	17	20	20	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117