Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  5  of  117  ( 13967 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1219577--1219605
2
14.5
2
100
0
58
51
0
0
48
1.00
1222885--1222915
2
15.5
2
100
0
62
51
0
0
48
1.00
1227546--1227704
60
2.7
59
84
9
227
37
11
6
45
1.66
1227721--1227779
5
11.8
5
78
10
59
79
0
3
16
0.86
1227721--1227780
6
9.7
6
75
24
54
80
0
3
16
0.85
1228688--1228854
19
9.0
18
68
20
71
61
3
5
29
1.35
1228702--1228803
28
3.5
28
84
7
123
61
2
5
29
1.34
1228722--1228795
14
5.1
14
71
18
62
60
4
6
28
1.40
1228846--1228912
23
2.8
23
77
18
66
70
2
5
20
1.22
1228872--1228904
17
1.9
17
93
0
57
72
3
3
21
1.11
1228831--1228893
30
2.0
32
81
12
76
69
3
4
22
1.21
1229092--1229382
83
3.5
82
85
6
352
39
21
15
23
1.91
1229092--1229474
42
9.1
41
83
7
346
39
20
15
24
1.91
1229135--1229475
83
4.1
82
79
9
277
38
20
15
25
1.92
1229094--1229462
125
2.9
122
81
10
304
39
20
15
23
1.91
1230042--1230093
22
2.4
21
83
6
59
36
17
5
40
1.73
1231240--1231302
8
7.9
8
79
10
58
7
9
0
82
0.84
1231238--1231293
24
2.2
24
84
6
67
7
8
0
83
0.80
1231248--1231320
32
2.2
35
85
7
98
8
13
0
78
0.97
1231239--1231305
9
8.1
9
74
15
56
8
10
0
80
0.90
1234859--1235021
60
2.7
59
85
5
209
36
12
5
45
1.66
1235954--1235999
5
8.4
5
84
15
56
80
0
0
19
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1235954--1235999
12
4.1
11
89
10
67
80
0
0
19
0.71
1236019--1236211
4
48.0
4
69
19
66
65
2
4
27
1.22
1236027--1236177
22
7.0
22
73
18
102
64
2
3
29
1.23
1236108--1236206
37
2.7
38
79
17
111
69
1
4
25
1.12
1241452--1241486
17
2.1
17
88
0
52
40
11
8
40
1.72
1244614--1244646
17
2.1
16
88
11
50
24
0
0
75
0.80
1251841--1251901
28
2.3
26
83
16
72
50
1
0
47
1.10
1265619--1265675
26
2.2
26
80
0
69
33
1
3
61
1.23
1266736--1266792
30
1.9
30
85
0
78
45
0
1
52
1.11
1267803--1267849
14
3.5
13
82
8
58
59
0
0
40
0.97
1299894--1300012
62
1.9
62
92
0
202
26
17
32
23
1.97
1307704--1307744
18
2.2
20
86
8
59
46
0
0
53
1.00
1310622--1310647
2
13.0
2
100
0
52
50
0
0
50
1.00
1311766--1311827
23
2.8
22
80
7
72
46
3
8
41
1.49
1311838--1311864
13
2.1
13
100
0
54
55
0
7
37
1.28
1311912--1311954
21
2.0
21
86
0
59
37
2
4
55
1.33
1312082--1312143
30
2.1
30
84
0
79
48
3
6
41
1.45
1312365--1312410
2
23.5
2
91
4
67
54
0
0
45
0.99
1311710--1313738
697
3.0
677
85
5
2666
44
7
5
42
1.55
1313062--1313095
2
17.5
2
93
6
61
50
0
0
50
1.00
1313880--1313921
14
3.1
14
86
6
59
38
2
0
59
1.10
1340804--1340846
2
21.5
2
100
0
86
0
0
48
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1354474--1354523
25
2.0
25
96
0
91
28
22
16
34
1.95
1359954--1359984
2
16.0
2
93
6
55
51
0
0
48
1.00
1378985--1379035
21
2.5
21
87
9
70
43
1
0
54
1.11
1379367--1379391
11
2.3
11
100
0
50
68
0
0
32
0.90
1379983--1380030
22
2.2
21
81
7
51
35
6
2
56
1.36
1382725--1382786
15
4.2
15
77
2
63
53
1
0
45
1.10
1385766--1385813
24
2.0
24
84
15
64
54
0
4
41
1.20
1391531--1391807
119
2.3
120
84
8
363
34
12
7
45
1.70
1391822--1391863
22
1.9
22
85
9
59
71
2
11
14
1.24
1391845--1391914
18
3.9
17
73
19
54
77
1
7
14
1.05
1391845--1391910
17
4.2
16
70
18
59
77
1
7
13
1.05
1391823--1391923
22
4.6
21
70
19
55
74
1
7
15
1.14
1391877--1391966
26
3.4
25
74
11
72
71
3
2
23
1.13
1392912--1392962
20
2.5
20
87
3
66
78
0
0
21
0.75
1392888--1392962
5
15.0
5
76
18
59
78
0
4
17
0.90
1392889--1392963
6
12.7
6
76
16
59
80
0
4
16
0.87
1392909--1392962
11
4.9
11
84
10
67
79
0
0
20
0.73
1393103--1393148
17
2.7
18
78
18
53
13
0
6
80
0.89
1393106--1393159
10
5.7
9
80
10
54
12
0
5
81
0.85
1393165--1393375
41
5.1
41
91
0
314
36
23
15
24
1.94
1398594--1398933
57
5.8
57
84
7
428
36
14
5
43
1.68
1398596--1398931
182
1.9
176
90
3
537
36
14
4
44
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1398946--1398987
22
1.9
22
85
9
59
71
2
11
14
1.24
1398969--1399016
18
2.8
17
81
9
53
79
2
6
12
1.01
1398969--1399034
17
4.2
16
70
18
59
77
1
7
13
1.05
1398947--1399033
22
3.9
21
69
19
52
74
2
9
13
1.15
1399055--1399088
8
4.2
8
84
0
50
82
2
0
14
0.79
1399050--1399089
21
1.9
19
85
14
53
77
5
0
17
0.94
1399416--1399456
20
2.0
20
85
0
55
34
21
19
24
1.97
1399875--1399912
15
2.4
16
82
13
51
76
7
5
10
1.15
1399882--1399912
15
2.1
15
93
0
53
77
6
6
9
1.12
1400031--1400083
5
10.0
5
84
11
70
81
1
0
16
0.79
1400031--1400085
22
2.6
21
91
5
92
81
1
0
16
0.77
1400032--1400083
27
1.9
27
96
0
95
82
1
0
15
0.75
1403329--1403382
25
2.2
25
93
0
90
35
9
16
38
1.81
1403558--1403916
81
4.3
80
80
7
378
23
16
32
27
1.96
1403654--1403688
17
2.1
17
94
0
61
20
17
28
34
1.95
1403607--1403940
168
2.0
168
87
0
488
24
16
32
26
1.96
1403839--1403980
64
2.2
64
89
0
212
21
14
36
27
1.92
1403990--1404061
32
2.2
32
95
0
126
22
18
27
31
1.97
1408181--1408237
29
2.0
29
82
3
71
49
0
7
43
1.29
1408291--1408340
19
2.7
19
75
22
52
40
0
0
60
0.97
1408327--1408383
27
2.1
27
83
6
71
31
1
1
64
1.13
1408693--1408789
49
2.0
49
95
0
176
38
0
45
16
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1416492--1416533
9
4.2
10
82
17
52
26
2
0
71
0.98
1416498--1416533
9
3.8
9
86
13
54
22
0
0
77
0.76
1416492--1416533
20
2.1
20
95
0
75
26
2
0
71
0.98
1421737--1421905
80
2.1
82
90
5
263
43
7
6
42
1.59
1423833--1424779
474
2.0
474
97
0
1786
35
17
8
38
1.81
1428612--1428658
22
2.1
22
84
0
58
38
6
0
55
1.26
1428754--1428813
23
2.5
22
80
15
66
45
1
1
51
1.21
1428754--1428807
24
2.3
25
84
9
69
44
0
1
53
1.11
1432013--1432042
14
2.1
14
100
0
60
50
0
13
36
1.42
1432340--1432395
23
2.4
25
77
14
66
44
0
1
53
1.11
1437489--1437529
13
3.2
13
78
0
55
85
9
0
4
0.73
1438043--1438079
3
12.3
3
100
0
74
0
0
64
35
0.94
1439465--1439489
2
12.5
2
100
0
50
48
0
0
52
1.00
1443515--1443564
25
2.0
25
96
0
91
32
18
28
22
1.97
1445438--1445477
5
7.8
5
94
5
71
40
40
20
0
1.52
1448738--1449110
190
2.0
190
98
0
719
22
8
25
43
1.81
1449318--1449350
15
2.2
15
94
0
57
30
0
42
27
1.56
1454959--1455019
25
2.5
25
76
10
72
47
0
3
49
1.18
1455570--1455596
12
2.2
12
100
0
54
33
0
7
59
1.25
1458995--1459039
12
4.0
12
77
16
51
75
0
20
4
0.97
1464078--1464115
20
1.9
20
84
10
51
57
18
2
21
1.52
1470308--1470338
2
16.0
2
93
6
55
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1472182--1472208
2
13.5
2
100
0
54
51
0
0
48
1.00
1473514--1473552
16
2.4
16
91
0
60
74
2
12
10
1.17
1473982--1474032
20
2.5
21
87
9
70
54
0
0
45
0.99
1473985--1474038
20
2.7
19
80
8
54
57
0
0
42
0.98
1489296--1489346
6
8.7
6
75
12
52
33
0
1
64
1.05
1489510--1489549
20
2.0
20
100
0
80
15
50
10
25
1.74
1498355--1498390
9
3.9
9
89
7
54
41
11
2
44
1.54
1503031--1503059
2
14.5
2
100
0
58
0
51
0
48
1.00
1506620--1506686
23
3.0
22
80
8
73
73
10
0
16
1.10
1507487--1507536
8
6.1
8
86
4
55
66
0
0
34
0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117