genome.fa.s90.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  101  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18721170--18721219	26	1.9	26	91	0	82	30	20	24	26	1.98
18722963--18723015	26	2.0	26	96	0	97	24	20	28	26	1.99
18723846--18723898	26	2.0	26	92	0	88	26	16	26	30	1.97
18710618--18726625	895	17.9	895	85	3	20273	25	23	24	25	2.00
18725644--18725696	26	2.0	26	92	0	88	26	16	26	30	1.97
18725877--18725902	8	3.2	8	100	0	52	11	26	61	0	1.30
18727280--18727331	26	2.0	26	88	0	77	28	19	23	28	1.98
18728907--18728958	26	2.0	26	84	0	68	28	15	17	38	1.90
18729402--18731394	901	2.3	878	83	6	2458	25	23	24	26	2.00
18730648--18730700	26	2.0	26	92	0	88	26	20	22	30	1.98
18732540--18732591	26	2.0	26	88	0	77	28	9	11	50	1.70
18731578--18734749	880	3.7	869	84	5	3874	25	24	23	26	2.00
18734753--18739903	871	5.8	869	85	6	6166	25	24	25	25	2.00
18738055--18738107	26	2.0	26	92	0	88	28	18	24	28	1.98
18738957--18739009	26	2.0	26	96	0	97	28	20	24	26	1.99
18740030--18742351	903	2.6	895	86	3	3155	25	23	24	26	2.00
18743050--18743102	26	2.0	26	96	0	97	26	18	26	28	1.98
18743924--18743976	26	2.0	26	96	0	97	26	18	26	28	1.98
18742384--18747915	874	6.2	879	85	6	6546	25	24	25	25	2.00
18744786--18744857	26	2.8	26	95	0	135	27	20	26	25	1.99
18745711--18745763	26	2.0	26	96	0	97	26	18	26	28	1.98
18744097--18747930	899	4.3	897	86	4	4890	25	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18746610--18746665	26	2.2	26	90	0	85	30	19	19	30	1.97
18749208--18749283	26	2.9	26	94	0	134	30	19	26	23	1.98
18747930--18755006	900	7.9	914	83	6	8133	25	24	24	25	2.00
18752800--18752850	26	2.0	26	96	0	93	33	17	29	19	1.95
18759312--18759364	26	2.0	26	92	0	88	28	18	24	28	1.98
18758444--18766849	904	9.3	902	87	4	10938	25	24	25	25	2.00
18760216--18760268	26	2.0	26	92	0	88	28	20	22	28	1.99
18761121--18761173	26	2.0	26	96	0	97	26	20	24	28	1.99
18762013--18762091	26	3.0	25	89	7	122	26	20	24	29	1.99
18762943--18762993	26	2.0	26	88	0	75	25	19	27	27	1.99
18763825--18763875	26	2.0	26	92	0	84	31	19	23	25	1.98
18764719--18764797	26	3.0	27	94	3	119	27	16	25	30	1.97
18768105--18768157	26	2.0	26	100	0	106	30	20	22	26	1.98
18770744--18770793	26	1.9	26	100	0	100	28	20	28	24	1.99
18771633--18771685	26	2.0	26	100	0	106	30	20	22	26	1.98
18773275--18773317	11	4.0	11	87	6	61	9	32	37	20	1.85
18773275--18773317	21	2.0	22	86	4	61	9	32	37	20	1.85
18773398--18773447	26	1.9	26	100	0	100	28	20	26	26	1.99
18774297--18774349	26	2.0	26	88	0	79	28	18	26	26	1.98
18772591--18776747	920	4.6	896	87	3	5593	25	24	24	25	2.00
18775181--18775233	26	2.0	26	96	0	97	28	16	24	30	1.97
18777355--18777407	26	2.0	26	88	0	79	30	22	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18779720--18779772	26	2.0	26	96	0	97	28	20	26	24	1.99
18778348--18779836	726	2.0	734	88	3	2236	26	24	23	25	2.00
18780604--18780654	26	2.0	26	84	7	68	29	15	23	31	1.95
18781495--18781547	26	2.0	26	100	0	106	26	20	26	26	1.99
18783296--18783348	26	2.0	26	92	0	88	26	16	26	30	1.97
18784197--18784249	25	2.1	26	89	3	81	28	20	22	28	1.99
18785093--18785145	26	2.0	26	96	0	97	26	18	26	28	1.98
18786828--18787233	159	2.6	159	85	0	544	21	29	29	20	1.98
18787884--18787936	26	2.0	26	92	0	88	30	20	20	28	1.98
18787025--18791565	900	5.0	903	88	2	6344	25	24	24	24	2.00
18788784--18788836	26	2.0	26	92	0	88	32	20	18	28	1.97
18789685--18789735	26	2.0	26	88	0	75	27	17	27	27	1.98
18791490--18791542	26	2.0	26	96	0	97	28	20	26	24	1.99
18790771--18792260	744	2.0	745	94	0	2631	25	23	24	26	2.00
18793111--18793163	26	2.0	26	85	0	70	30	20	20	28	1.98
18794020--18794072	26	2.0	26	92	0	88	26	20	24	28	1.99
18791516--18795929	892	4.9	892	84	6	5629	25	24	24	25	2.00
18796641--18796693	26	2.0	26	88	0	79	26	20	22	30	1.98
18797534--18797583	26	1.9	26	91	0	82	32	16	26	26	1.96
18795931--18798472	890	2.8	897	86	3	3459	26	23	24	25	2.00
18798735--18798787	26	2.0	26	88	0	79	26	18	26	28	1.98
18799639--18799691	26	2.0	26	96	0	97	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18800545--18800597	26	2.0	26	100	0	106	26	20	26	26	1.99
18798561--18801668	903	3.4	904	87	1	4289	24	25	25	25	2.00
18802061--18802113	26	2.0	26	92	0	88	26	20	24	28	1.99
18802948--18803002	26	2.1	26	96	0	101	29	18	23	29	1.98
18804557--18804606	26	1.9	26	95	0	91	30	20	26	24	1.98
18806367--18806419	26	2.0	26	89	7	81	26	15	26	32	1.95
18803846--18807476	915	4.0	898	81	9	4102	25	23	25	25	2.00
18807270--18807322	26	2.0	26	96	0	97	26	20	24	28	1.99
18808937--18808989	26	2.0	26	92	7	90	30	20	22	26	1.98
18809609--18811665	872	2.3	881	83	6	2543	25	25	24	25	2.00
18811436--18811488	26	2.0	26	89	7	81	28	18	24	28	1.98
18814343--18814393	26	2.0	26	92	0	84	29	21	21	27	1.99
18815175--18815226	26	2.0	26	96	0	95	26	17	26	28	1.97
18815674--18815726	26	2.0	26	88	0	79	26	18	26	28	1.98
18816571--18816623	26	2.0	26	92	0	88	28	18	24	28	1.98
18818302--18818354	26	2.0	26	85	0	70	30	16	22	30	1.96
18819185--18819237	26	2.0	26	92	0	88	26	18	24	30	1.98
18820148--18820501	192	1.8	192	84	3	489	20	29	32	16	1.95
18822035--18822087	26	2.0	26	92	0	88	28	18	26	26	1.98
18821154--18825314	889	4.6	893	85	3	5398	25	23	24	26	2.00
18822924--18822976	26	2.0	26	100	0	106	26	20	26	26	1.99
18823826--18823876	26	2.0	26	88	7	77	29	15	27	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18824731--18824783	26	2.0	26	96	0	97	28	20	24	26	1.99
18825362--18825414	26	2.0	26	96	0	97	28	20	24	26	1.99
18824681--18825934	620	2.0	626	83	4	1595	25	22	23	27	2.00
18826222--18828236	888	2.3	873	83	8	2523	25	24	25	24	2.00
18827961--18828013	26	2.0	26	96	0	97	26	18	26	28	1.98
18830100--18830152	26	2.0	26	88	0	79	26	20	22	30	1.98
18830993--18831042	26	1.9	26	91	0	82	32	16	26	26	1.96
18829394--18832001	888	2.9	900	86	4	3616	25	23	24	25	2.00
18831730--18832312	312	1.9	312	86	1	846	24	31	25	19	1.98
18833123--18833175	26	2.0	26	92	0	88	28	22	24	24	2.00
18833933--18833969	11	3.4	11	96	0	65	13	29	37	18	1.90
18833926--18833969	22	2.0	22	86	0	61	13	31	34	20	1.92
18834050--18834101	26	2.0	26	96	3	97	26	21	25	26	1.99
18832042--18835170	904	3.4	897	84	5	3952	25	25	24	24	2.00
18834950--18835000	26	2.0	26	88	0	75	27	19	23	29	1.98
18836476--18836527	26	2.0	26	96	0	95	28	19	25	26	1.98
18838082--18838134	26	2.0	26	96	0	97	28	20	24	26	1.99
18837347--18840261	902	3.3	875	85	5	3689	25	23	25	25	2.00
18839878--18839930	26	2.0	26	92	7	90	26	16	26	30	1.97
18841028--18841083	26	2.2	26	90	0	85	28	19	23	28	1.98
18841933--18841988	26	2.2	26	96	0	103	28	19	23	28	1.98
18840257--18845990	905	6.4	896	86	5	7317	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18843717--18843769	26	2.0	26	96	0	97	32	20	20	26	1.98
18845473--18845525	26	2.0	26	96	0	97	28	20	24	26	1.99
18846190--18846240	26	2.0	26	84	7	68	29	17	21	31	1.96
18847124--18849770	903	3.0	860	82	7	3122	25	24	24	25	2.00
18848861--18848913	26	2.0	26	92	0	88	28	20	22	28	1.99
18849744--18849796	26	2.0	26	89	7	81	28	18	24	28	1.98
18851063--18851112	26	1.9	26	95	0	91	28	18	24	30	1.97
18852654--18852706	26	2.0	26	92	0	88	28	22	22	26	1.99
18853485--18853537	26	2.0	26	96	0	97	26	18	26	28	1.98
18852151--18853825	837	2.0	835	86	4	2322	24	24	25	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117