genome.fa.s90.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  98  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18366859--18366889	15	2.1	15	100	0	62	25	35	19	19	1.95
18366907--18366958	26	2.0	26	92	3	88	25	19	26	28	1.98
18369549--18369601	26	2.0	26	92	0	88	26	20	26	26	1.99
18371316--18371393	25	3.0	26	90	3	131	29	19	23	28	1.98
18373021--18373073	26	2.0	26	92	0	88	28	18	24	28	1.98
18373917--18373969	26	2.0	26	92	0	88	28	18	24	28	1.98
18374801--18374853	26	2.0	26	85	0	70	28	18	24	28	1.98
18372509--18375926	884	3.8	882	86	3	4524	25	24	23	25	2.00
18376486--18376538	26	2.0	26	85	0	70	24	20	22	32	1.98
18375181--18376778	799	2.0	801	84	2	2075	26	24	24	24	2.00
18375983--18381885	902	6.6	887	88	2	8038	25	23	23	26	2.00
18379164--18379216	26	2.0	26	96	0	97	26	15	26	32	1.95
18380057--18380107	26	2.0	26	96	0	93	27	23	23	25	2.00
18380945--18380997	26	2.0	26	96	0	97	26	15	26	32	1.95
18381837--18381887	26	2.0	26	96	0	93	29	23	21	25	1.99
18382565--18382617	26	2.0	26	92	0	88	28	18	24	28	1.98
18383445--18383500	26	2.2	26	90	0	85	26	16	23	33	1.95
18385196--18385248	26	2.0	26	92	0	88	28	18	24	28	1.98
18387000--18387051	26	2.0	25	89	10	79	28	17	26	26	1.97
18381860--18388809	881	7.8	892	84	4	8539	25	24	24	25	2.00
18390370--18390422	26	2.0	26	96	0	97	26	18	26	28	1.98
18388780--18405154	890	18.6	887	82	7	16402	25	24	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18392999--18393049	26	2.0	26	88	0	75	31	13	23	31	1.93
18394769--18394821	26	2.0	26	92	0	88	30	20	22	26	1.98
18397380--18397431	25	2.0	26	88	3	79	28	19	23	28	1.98
18398276--18398325	26	1.9	26	95	0	91	30	22	24	24	1.99
18399166--18399215	26	1.9	26	95	0	91	30	22	24	24	1.99
18400057--18400109	26	2.0	26	100	0	106	26	20	26	26	1.99
18400934--18400985	25	2.0	26	92	3	88	28	19	25	26	1.98
18401822--18401874	26	2.0	26	96	0	97	28	20	26	24	1.99
18403574--18403626	26	2.0	26	92	0	88	32	20	20	26	1.98
18404468--18404518	26	2.0	26	92	0	84	31	19	19	29	1.97
18408002--18408084	22	3.8	20	71	14	58	74	0	18	7	1.03
18408027--18408087	9	6.9	9	74	10	54	80	0	14	4	0.87
18408007--18408087	23	3.6	22	80	14	94	76	0	17	6	0.98
18408038--18408086	17	3.0	16	77	13	55	81	0	14	4	0.83
18409334--18409631	41	7.1	41	87	2	407	23	15	23	37	1.93
18409334--18409630	83	3.6	83	89	2	436	23	15	23	37	1.93
18409334--18409631	124	2.4	124	89	2	436	23	15	23	37	1.93
18409638--18409697	1	60.0	1	76	0	57	88	11	0	0	0.52
18409638--18409697	11	5.5	11	84	4	86	88	11	0	0	0.52
18409638--18409697	14	4.3	13	84	12	75	88	11	0	0	0.52
18409638--18409688	7	7.6	7	89	6	79	88	11	0	0	0.52
18409638--18409697	9	6.7	9	80	16	63	88	11	0	0	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18409909--18410046	10	13.9	10	67	22	51	28	2	2	65	1.18
18409896--18410045	31	5.1	28	72	17	94	28	2	3	66	1.19
18409967--18410039	17	4.2	17	76	21	64	31	1	2	64	1.16
18410604--18410644	11	3.7	11	86	0	55	17	29	29	24	1.97
18411135--18411174	14	2.5	17	73	23	50	15	10	0	75	1.05
18411121--18411169	14	3.4	14	80	5	53	14	8	2	75	1.12
18411180--18411294	60	1.9	61	91	5	189	46	6	13	33	1.69
18411890--18411942	26	2.0	26	92	0	88	26	18	24	30	1.98
18412794--18412846	26	2.0	26	96	0	97	26	18	28	26	1.98
18413693--18413745	26	2.0	26	88	0	79	28	16	28	26	1.97
18411782--18417162	896	6.0	892	86	3	6918	25	23	24	26	2.00
18414589--18414641	26	2.0	26	96	0	97	26	18	28	26	1.98
18417420--18417447	8	3.5	8	100	0	56	0	14	75	10	1.06
18418097--18418149	26	2.0	26	88	0	79	26	16	26	30	1.97
18418986--18419036	26	2.0	26	96	0	93	29	15	23	31	1.95
18420765--18420817	26	2.0	26	92	0	88	26	18	24	30	1.98
18422561--18422613	26	2.0	26	92	0	88	28	18	24	28	1.98
18422873--18423007	65	2.1	65	91	0	216	25	21	13	40	1.89
18425260--18425312	26	2.0	26	96	0	97	28	20	24	26	1.99
18426137--18426189	26	2.0	26	96	0	97	26	18	26	28	1.98
18427040--18427092	26	2.0	26	92	0	88	30	18	24	26	1.98
18427942--18427994	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18428829--18428880	26	2.0	26	96	0	95	26	17	26	28	1.97
18417211--18464243	902	52.4	901	82	6	49373	25	24	24	25	2.00
18429733--18429783	26	2.0	26	96	0	93	29	9	27	33	1.89
18430626--18430677	26	2.0	25	92	3	86	26	17	28	26	1.97
18432414--18432469	26	2.2	26	93	0	94	30	17	19	32	1.95
18433315--18433367	26	2.0	26	92	0	88	26	20	26	26	1.99
18434196--18434248	26	2.0	26	100	0	106	30	20	22	26	1.98
18435101--18435151	26	2.0	25	96	3	93	27	19	25	27	1.99
18436342--18436394	26	2.0	26	96	0	97	28	20	24	26	1.99
18437238--18437290	26	2.0	26	92	0	88	28	18	24	28	1.98
18438133--18438185	26	2.0	26	92	0	88	26	22	26	24	2.00
18439034--18439086	26	2.0	26	92	0	88	26	20	26	26	1.99
18443517--18443567	26	2.0	26	92	0	84	27	19	23	29	1.98
18435606--18464243	884	32.3	891	85	5	34502	25	24	25	25	2.00
18444385--18444437	26	2.0	26	81	0	61	30	26	22	20	1.98
18445250--18445302	26	2.0	26	92	0	88	30	20	22	26	1.98
18446157--18446208	26	2.0	26	85	7	70	28	19	25	26	1.98
18451443--18451493	26	2.0	25	88	3	75	27	15	27	29	1.96
18452327--18452379	26	2.0	26	88	0	79	32	20	18	28	1.97
18453225--18453277	26	2.0	26	96	0	97	28	20	26	24	1.99
18454103--18454155	26	2.0	26	88	0	79	28	16	26	28	1.97
18456736--18456786	26	2.0	26	92	7	86	29	21	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18457625--18457677	26	2.0	26	96	0	97	28	20	24	26	1.99
18458515--18458567	26	2.0	26	96	0	97	28	20	24	26	1.99
18459405--18459454	26	1.9	26	95	0	91	32	20	24	24	1.98
18460290--18460342	26	2.0	26	96	0	97	28	20	24	26	1.99
18461182--18461234	26	2.0	26	96	0	97	26	18	26	28	1.98
18462087--18462136	26	1.9	26	87	0	73	30	14	24	32	1.94
18464679--18464756	26	3.0	26	88	1	113	28	16	25	29	1.97
18465599--18465651	26	2.0	26	92	0	88	28	18	24	28	1.98
18466535--18467577	551	1.9	551	90	1	1678	26	19	22	31	1.98
18468665--18468717	26	2.0	26	96	0	97	28	20	24	26	1.99
18470433--18470509	26	3.0	26	94	0	136	31	16	24	27	1.97
18471109--18471161	26	2.0	26	100	0	106	26	20	26	26	1.99
18471991--18472043	26	2.0	26	92	0	88	26	20	26	26	1.99
18470689--18472711	893	2.3	887	87	2	2948	26	23	24	26	2.00
18472718--18474953	888	2.5	891	85	6	3021	24	23	25	25	2.00
18476194--18476244	26	2.0	26	96	0	93	29	17	23	29	1.97
18476257--18478674	896	2.7	893	87	3	3464	25	24	24	26	2.00
18478610--18478662	26	2.0	26	96	0	97	26	18	26	28	1.98
18479410--18479505	27	3.7	27	69	17	76	25	1	5	68	1.16
18479452--18479546	4	22.5	4	69	18	50	28	2	3	66	1.18
18479487--18479556	17	4.1	17	75	22	58	31	1	2	64	1.17
18480523--18480556	18	1.9	17	94	5	59	14	0	2	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18480568--18480607	17	2.4	16	84	8	53	22	5	0	72	1.04
18480594--18480641	17	2.8	17	78	9	53	12	6	2	79	1.01
18480594--18480651	14	4.2	14	76	8	57	13	6	1	77	1.05
18480617--18480656	14	2.5	17	73	23	50	15	10	0	75	1.05
18480659--18480893	58	4.0	59	87	5	334	44	8	12	34	1.73
18480662--18480893	117	2.0	119	90	5	373	44	8	12	34	1.74
18484758--18484788	15	2.1	15	93	0	53	83	0	16	0	0.64
18486053--18486431	42	9.1	41	90	3	555	22	17	24	36	1.95
18486053--18486431	125	3.0	124	90	4	595	22	17	24	36	1.95
18486053--18486431	83	4.6	82	91	3	573	22	17	24	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117