genome.fa.s90.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  49  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11304492--11304790	142	2.1	144	82	3	363	45	5	8	40	1.59
11304623--11304790	71	2.3	71	82	7	196	46	4	7	41	1.52
11304492--11304836	142	2.4	142	77	6	331	45	5	10	38	1.61
11305385--11305436	25	2.1	25	81	0	59	25	0	5	69	1.10
11306049--11306088	20	2.0	20	90	0	62	35	10	10	45	1.71
11306178--11306220	20	2.2	20	86	0	59	32	11	4	51	1.59
11306303--11306930	41	15.7	41	84	6	774	31	5	11	51	1.61
11306303--11306930	120	5.2	119	85	6	817	31	5	11	51	1.61
11306929--11307008	32	2.8	27	70	17	72	32	3	10	53	1.52
11306943--11307006	32	1.9	33	87	6	94	32	1	10	54	1.45
11306981--11307058	19	3.8	20	79	17	79	30	5	10	53	1.56
11306295--11307087	278	2.9	278	80	10	665	31	5	11	51	1.61
11308239--11308316	19	3.8	19	69	26	52	23	10	8	57	1.60
11314994--11315018	13	1.9	13	100	0	50	24	24	12	40	1.88
11315195--11315412	43	5.1	43	80	5	237	28	16	18	36	1.93
11315195--11315412	84	2.6	84	82	4	260	28	16	18	36	1.93
11316322--11316367	20	2.3	20	88	0	65	34	10	8	45	1.70
11316351--11316414	32	2.0	33	87	3	94	32	4	7	54	1.50
11316401--11316463	20	3.1	20	81	2	63	31	3	11	53	1.52
11316435--11316473	20	2.0	20	89	0	60	28	10	7	53	1.62
11316550--11317091	20	26.8	20	72	16	372	30	6	12	50	1.65
11316551--11317035	41	11.9	40	78	14	396	30	6	12	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11316922--11316971	25	2.0	25	92	0	82	26	10	14	50	1.73
11316827--11317073	127	1.9	128	86	5	349	30	7	12	50	1.67
11316550--11317091	41	13.4	40	77	13	376	30	6	12	50	1.65
11317106--11317167	32	1.9	32	90	0	97	29	1	12	56	1.46
11317149--11317202	19	2.9	18	80	20	67	27	7	11	53	1.63
11317395--11317441	25	2.0	25	84	15	66	31	4	17	46	1.67
11321317--11321350	17	2.0	17	88	0	50	76	2	0	20	0.92
11321369--11321405	16	2.3	16	95	0	65	78	0	0	21	0.75
11321542--11321579	14	2.6	14	84	15	51	71	0	2	26	1.00
11321823--11321881	12	4.6	13	71	12	50	55	23	3	16	1.56
11321823--11321881	26	2.3	26	79	2	66	55	23	3	16	1.56
11327645--11327698	10	5.3	10	78	10	56	77	0	12	9	0.98
11327654--11327705	22	2.3	23	83	6	61	76	0	15	7	0.99
11327647--11327706	16	3.9	15	75	18	52	78	0	13	8	0.96
11331884--11331919	14	2.8	12	84	15	54	77	0	11	11	0.99
11331995--11332045	13	4.0	13	76	2	59	78	3	9	7	1.07
11333777--11333848	32	2.2	33	82	2	92	40	16	11	31	1.84
11334425--11334489	6	11.0	6	74	22	50	69	0	1	29	0.98
11334425--11334486	14	4.6	14	82	9	76	69	0	1	29	0.98
11334419--11334508	27	3.4	25	77	22	87	70	1	1	27	1.02
11335753--11336494	130	5.8	129	76	7	578	39	13	7	39	1.72
11339158--11339189	16	2.0	16	93	0	55	9	6	34	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11344199--11344315	22	5.4	22	77	10	80	40	1	5	52	1.36
11344199--11344284	22	3.9	23	82	8	90	39	1	6	52	1.36
11344198--11344305	11	10.0	11	70	11	71	39	0	5	53	1.30
11344205--11344333	43	3.0	43	80	5	127	41	3	4	50	1.39
11344201--11344340	22	6.5	22	76	3	77	41	2	5	50	1.39
11344362--11344433	22	3.3	22	78	3	65	41	8	4	45	1.53
11344563--11344869	22	14.1	22	65	14	111	37	9	4	48	1.55
11345134--11345302	22	7.8	21	70	10	81	36	5	7	50	1.54
11345128--11345431	44	7.1	44	69	11	121	37	7	5	49	1.55
11345321--11345361	22	1.9	21	90	5	64	46	2	2	48	1.28
11345254--11345379	61	2.1	60	82	8	148	37	7	3	52	1.45
11345343--11345467	22	5.7	22	72	3	90	36	9	4	49	1.57
11345558--11345692	22	6.3	22	71	13	84	34	8	8	49	1.62
11358915--11358945	13	2.4	13	94	0	53	48	0	0	51	1.00
11359348--11359468	60	2.0	60	96	0	224	50	6	12	30	1.65
11360328--11360360	11	3.1	11	82	8	50	36	0	3	60	1.12
11361542--11361583	21	2.0	21	86	9	59	73	2	0	23	0.94
11361558--11361635	40	1.9	42	84	5	106	70	7	1	20	1.19
11364130--11364155	6	4.3	6	100	0	52	84	0	0	15	0.62
11372378--11372419	18	2.6	16	85	14	59	83	9	0	7	0.81
11372889--11372942	5	10.6	5	84	11	65	83	14	1	0	0.73
11372881--11372942	25	2.4	26	84	7	74	82	14	1	1	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11373440--11373545	41	2.5	40	77	15	108	33	16	16	33	1.91
11373556--11373868	126	2.5	126	83	4	371	35	16	12	35	1.87
11373848--11373964	57	2.1	57	86	3	164	33	16	14	35	1.89
11374018--11374074	22	2.6	22	80	0	60	31	14	14	40	1.85
11374792--11375168	145	2.6	144	81	0	466	29	14	12	42	1.84
11378071--11378106	18	2.0	19	89	10	58	41	0	0	58	0.98
11386324--11386371	22	2.2	22	85	7	62	12	6	10	70	1.32
11387295--11387361	25	2.8	24	82	8	73	67	0	17	14	1.24
11387349--11387373	13	1.9	13	100	0	50	80	0	20	0	0.72
11392116--11392142	2	13.5	2	100	0	54	51	0	0	48	1.00
11392142--11392195	2	27.0	2	100	0	108	50	0	50	0	1.00
11392513--11392563	22	2.4	22	90	6	79	54	0	1	43	1.11
11392791--11392861	25	3.0	24	79	6	72	53	12	0	33	1.39
11392907--11392954	18	2.7	17	76	20	53	41	2	0	56	1.11
11393298--11393386	18	5.2	18	70	21	75	46	2	2	49	1.26
11393342--11393384	17	2.5	17	88	3	59	48	2	0	48	1.14
11395783--11395838	17	3.1	18	74	7	60	58	14	0	26	1.36
11395882--11395939	9	6.7	9	79	11	50	58	5	5	31	1.42
11395861--11395949	27	3.4	25	74	13	72	56	5	6	31	1.49
11395948--11395988	20	2.0	20	90	0	64	46	7	0	46	1.30
11396043--11396085	15	2.7	16	85	7	52	62	4	9	23	1.44
11396369--11396435	16	4.0	16	69	27	50	17	11	1	68	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11396362--11396445	17	5.3	16	70	21	54	16	11	3	67	1.35
11396526--11396562	19	1.9	19	94	0	65	27	2	8	62	1.37
11396605--11396706	52	1.9	54	80	7	120	29	5	3	60	1.38
11396805--11396866	29	2.2	28	82	8	72	33	1	9	54	1.43
11396900--11396941	21	2.0	21	85	0	57	23	2	4	69	1.20
11401074--11401099	2	13.0	2	100	0	52	50	0	0	50	1.00
11402748--11402788	3	13.7	3	100	0	82	68	31	0	0	0.90
11404507--11404540	16	2.2	16	89	5	52	47	5	5	41	1.52
11404605--11404662	21	2.7	21	81	2	62	37	6	10	44	1.65
11411120--11411144	3	8.3	3	100	0	50	32	0	0	68	0.90
11411883--11411911	2	14.5	2	100	0	58	51	0	0	48	1.00
11412888--11412912	12	2.1	12	100	0	50	32	0	0	68	0.90
11412968--11413010	12	3.8	11	79	14	52	55	9	0	34	1.32
11412996--11413042	17	2.7	17	93	3	76	55	6	0	38	1.26
11418908--11418962	3	18.3	3	100	0	110	65	0	0	34	0.93
11419009--11419049	21	2.0	21	85	9	57	19	2	4	73	1.13
11419671--11419705	2	17.5	2	100	0	70	48	0	0	51	1.00
11419924--11419958	2	17.5	2	100	0	70	48	0	0	51	1.00
11420895--11420944	25	2.0	26	84	11	68	24	8	22	46	1.78
11433953--11433977	11	2.3	11	100	0	50	48	8	0	44	1.32
11435459--11435502	17	2.6	17	82	3	54	25	2	0	72	0.96
11435646--11435683	14	2.9	13	88	7	51	18	2	23	55	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11436127--11436216	3	29.3	3	69	20	53	31	7	0	61	1.24
11436215--11436249	3	11.7	3	93	0	61	2	0	28	68	1.04
11436212--11436252	12	3.4	12	93	0	73	7	0	24	68	1.15
11437461--11437499	18	2.2	17	86	4	51	10	12	2	74	1.17
11443006--11443063	23	2.5	23	80	0	62	1	0	18	79	0.82
11443021--11443088	17	4.1	16	76	16	66	2	0	14	82	0.79
11443021--11443064	8	5.4	8	81	13	54	0	0	20	79	0.73
11443060--11443089	12	2.5	12	94	0	51	10	0	3	86	0.67
11443121--11443187	31	2.1	32	83	2	82	35	8	28	26	1.87
11443387--11443710	33	10.0	33	76	7	243	30	15	18	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117