genome.fa.s90.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  23  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6496779--6496825	23	2.1	22	84	4	58	59	0	2	38	1.09
6497763--6497795	8	4.1	8	85	14	50	75	0	0	24	0.80
6499510--6499556	23	2.0	23	100	0	94	34	12	8	44	1.73
6513777--6513806	6	5.0	6	91	0	51	30	33	20	16	1.94
6516014--6516043	2	15.5	2	93	6	53	53	0	0	46	1.00
6517417--6517446	4	7.2	4	92	7	51	0	23	0	76	0.78
6523873--6523906	14	2.4	14	85	0	50	44	0	0	55	0.99
6527202--6527228	13	2.1	13	100	0	54	66	0	0	33	0.92
6532644--6532679	3	12.0	3	100	0	72	66	0	0	33	0.92
6533722--6533784	16	4.1	16	79	4	67	47	9	3	39	1.52
6533737--6533814	20	3.9	20	74	9	61	44	5	7	42	1.55
6533747--6533791	16	2.8	16	79	0	54	46	6	4	42	1.50
6533745--6533817	20	3.5	20	83	3	83	43	4	8	43	1.53
6533806--6533855	18	2.8	18	84	0	64	34	8	14	44	1.74
6533899--6534234	12	28.0	12	68	9	85	39	6	8	45	1.59
6533902--6533995	18	5.3	18	67	14	61	46	11	4	37	1.60
6533875--6533967	44	2.1	44	82	4	116	44	16	5	34	1.70
6533899--6534113	26	8.1	26	71	9	132	41	7	7	42	1.63
6533943--6534244	14	21.4	14	72	11	188	39	4	8	47	1.55
6533943--6534243	30	9.8	30	73	8	185	38	4	8	47	1.55
6547050--6547086	12	2.8	13	88	12	58	67	0	0	32	0.91
6549639--6550030	216	1.8	216	84	3	547	28	15	23	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6549637--6550099	216	2.1	216	81	5	544	29	14	24	32	1.94
6556174--6556221	2	24.0	2	100	0	96	50	0	0	50	1.00
6561198--6561241	21	2.1	21	87	8	63	56	6	0	36	1.26
6561209--6561268	14	4.4	14	71	10	52	50	3	0	46	1.18
6561184--6561259	28	2.6	30	81	4	93	48	3	0	47	1.20
6561442--6561508	23	3.0	22	81	16	68	32	4	1	61	1.25
6561453--6561508	20	2.6	21	86	13	71	28	1	1	67	1.10
6561453--6561500	22	2.2	22	88	7	71	29	2	0	68	1.01
6561529--6561564	17	2.2	17	90	5	56	47	0	0	52	1.00
6561514--6561584	23	3.1	22	76	11	63	50	1	0	47	1.09
6568057--6568082	2	13.0	2	100	0	52	50	0	0	50	1.00
6572327--6572363	19	2.0	19	89	5	58	62	16	5	16	1.51
6574101--6574150	14	3.5	14	75	5	55	48	0	2	50	1.12
6574087--6574152	29	2.3	29	91	0	105	50	0	3	46	1.16
6578941--6578988	22	2.2	20	82	13	60	39	6	2	52	1.39
6580907--6580944	16	2.4	16	82	4	51	65	2	7	23	1.32
6581258--6581302	21	2.2	21	96	4	83	51	0	0	48	1.00
6581799--6581838	20	2.0	20	85	9	55	72	7	2	17	1.19
6584183--6584219	15	2.4	16	82	13	51	83	2	5	8	0.88
6584199--6584265	26	2.5	26	97	2	125	74	8	2	13	1.17
6584210--6584256	13	3.6	13	72	11	51	72	12	4	10	1.25
6584486--6584736	42	6.0	42	80	5	220	45	19	10	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6584517--6584737	84	2.6	84	82	4	259	47	18	9	23	1.79
6585023--6585169	79	1.9	80	91	1	242	34	15	12	38	1.85
6585079--6585263	59	3.2	58	86	3	266	31	17	12	38	1.87
6585075--6585284	115	1.8	117	92	2	361	33	16	11	38	1.85
6585190--6585443	79	3.2	79	88	2	361	32	15	13	38	1.87
6585403--6585458	21	2.6	21	85	2	76	39	17	8	33	1.81
6586714--6586792	9	8.6	9	74	13	63	5	16	0	78	0.92
6586713--6586781	10	6.6	10	77	14	59	4	15	0	79	0.88
6586714--6586781	11	6.4	11	76	10	52	4	14	0	80	0.85
6586714--6586791	21	3.8	19	75	18	59	5	15	0	79	0.90
6586715--6586774	30	2.0	31	87	9	88	5	15	0	80	0.88
6586728--6586792	19	3.4	18	74	19	53	6	16	0	76	0.97
6587148--6587194	24	2.0	23	87	4	67	4	12	2	80	0.94
6591392--6591509	55	2.2	53	85	10	150	32	11	5	51	1.59
6592439--6592642	109	1.9	109	85	8	290	27	12	5	54	1.59
6592507--6592661	53	2.8	52	73	13	134	26	12	5	55	1.59
6593898--6593956	5	11.8	5	80	10	68	79	1	0	18	0.81
6593889--6593957	35	2.0	35	85	5	95	79	1	2	15	0.92
6595048--6595077	15	2.0	15	100	0	60	40	13	0	46	1.43
6608729--6608757	10	2.7	11	94	5	51	51	0	3	44	1.18
6609065--6609089	6	4.2	6	100	0	50	48	0	0	52	1.00
6610747--6610785	2	19.5	2	94	0	69	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6618820--6618863	22	2.1	20	83	8	52	45	2	0	52	1.13
6621595--6621634	21	1.9	21	84	0	53	35	2	7	55	1.42
6621563--6621928	22	16.8	22	65	9	70	37	8	4	49	1.53
6621654--6621757	44	2.3	44	74	8	102	39	4	0	54	1.28
6621770--6621869	44	2.3	43	86	8	132	39	8	6	47	1.58
6621770--6621914	65	2.2	65	82	8	179	38	8	4	47	1.56
6622002--6622097	22	4.4	22	77	2	86	42	9	3	44	1.52
6622179--6622221	22	2.0	22	90	0	68	39	13	0	46	1.44
6622274--6622355	21	4.0	20	76	7	58	35	9	9	45	1.70
6625446--6625479	17	1.9	18	94	5	61	52	0	14	32	1.42
6630479--6630513	2	17.5	2	93	0	61	51	2	0	45	1.16
6632143--6632191	24	2.1	23	85	11	64	48	0	2	48	1.12
6632838--6632900	22	2.8	22	86	13	85	53	0	0	46	1.00
6633819--6633872	2	27.5	2	80	10	58	50	5	1	42	1.36
6635852--6635886	18	1.9	18	88	0	52	60	2	5	31	1.35
6643821--6643866	22	2.1	22	84	8	58	76	4	4	15	1.11
6644753--6644786	18	1.9	18	88	5	52	85	5	2	5	0.83
6644829--6644870	2	22.5	2	81	13	54	54	2	0	42	1.13
6645169--6645217	22	2.2	23	88	3	73	81	2	6	10	0.94
6645182--6645233	10	5.2	9	76	19	50	82	0	3	13	0.80
6645177--6645233	17	3.2	16	81	16	60	82	0	5	12	0.82
6645697--6645741	21	2.1	21	84	8	56	77	0	4	17	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6645813--6645864	17	3.2	16	76	15	54	82	1	9	5	0.90
6647159--6647202	22	2.0	22	81	0	52	40	0	9	50	1.34
6647252--6647298	11	4.4	11	78	2	51	31	2	12	53	1.51
6647246--6647325	19	3.9	21	72	9	65	37	3	7	51	1.48
6647208--6647341	22	6.2	22	70	8	69	38	5	5	51	1.47
6647300--6647361	22	2.8	22	85	4	72	38	4	1	54	1.31
6647323--6647373	22	2.3	22	86	6	68	31	9	3	54	1.51
6647402--6647537	22	6.2	21	72	13	78	37	7	7	47	1.59
6647444--6647538	44	2.2	43	84	5	120	40	6	8	45	1.60
6647673--6647740	22	3.1	21	87	4	82	41	7	2	48	1.46
6647680--6647735	11	5.1	11	82	0	67	41	7	3	48	1.48
6647826--6647887	22	2.8	23	68	7	56	32	12	6	48	1.67
6657226--6657259	15	2.2	16	89	5	52	79	2	2	14	0.97
6658151--6658184	18	1.9	18	88	5	52	85	5	2	5	0.83
6658227--6658268	2	22.5	2	81	13	54	54	2	0	42	1.13
6658567--6658615	22	2.2	23	88	3	73	81	2	6	10	0.94
6658580--6658631	10	5.2	9	76	19	50	82	0	3	13	0.80
6658575--6658631	17	3.2	16	81	16	60	82	0	5	12	0.82
6659096--6659140	21	2.1	21	84	8	56	77	0	4	17	0.92
6659049--6659261	117	1.8	118	81	8	272	63	5	6	24	1.41
6660556--6660599	22	2.0	22	81	0	52	40	0	9	50	1.34
6660648--6660694	11	4.4	11	78	2	51	31	2	12	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6660642--6660721	19	3.9	21	72	9	65	37	3	7	51	1.48
6660605--6660737	22	6.2	22	71	7	76	38	5	4	51	1.45
6660696--6660757	22	2.8	22	85	4	72	38	4	1	54	1.31
6660719--6660769	22	2.3	22	86	6	68	31	9	3	54	1.51
6660798--6660933	22	6.2	21	72	13	78	37	7	7	47	1.59
6660840--6660934	44	2.2	43	84	5	120	40	6	8	45	1.60
6660873--6660985	22	5.2	21	76	4	91	39	5	5	49	1.48
6660915--6660952	11	3.5	11	82	7	51	34	5	2	57	1.35
6661068--6661135	22	3.1	21	87	4	82	41	7	2	48	1.46
6661075--6661130	11	5.1	11	82	0	67	41	7	3	48	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117