genome.fa.s90.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  43  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10281747--10281820	31	2.4	32	78	17	77	47	31	2	18	1.63
10281742--10281914	7	26.6	7	68	18	97	47	33	1	17	1.56
10281777--10281928	12	11.7	13	74	14	100	46	35	0	18	1.50
10281753--10281897	19	7.3	21	75	17	105	47	32	1	18	1.57
10281742--10281888	55	2.5	60	82	10	162	48	32	1	17	1.55
10282037--10282091	29	1.9	28	85	10	76	34	16	5	43	1.71
10288891--10288927	2	18.5	2	100	0	74	51	0	0	48	1.00
10289128--10289163	12	2.8	14	80	20	51	63	0	0	36	0.94
10291485--10291519	13	2.6	14	90	4	54	54	0	0	45	0.99
10291485--10291534	16	3.2	16	81	10	52	54	0	0	46	1.00
10291645--10291690	17	2.9	16	87	12	69	47	2	0	50	1.13
10291633--10291691	17	3.2	19	80	11	68	47	1	1	49	1.21
10291844--10291957	36	3.2	34	80	8	113	50	1	1	46	1.22
10291901--10291964	28	2.3	28	81	10	78	45	3	1	50	1.27
10293570--10293625	29	1.9	29	82	7	69	25	0	5	69	1.09
10294735--10294782	8	6.0	8	78	9	53	14	0	4	81	0.84
10294774--10294818	15	3.1	15	77	6	56	13	0	11	75	1.05
10294769--10294826	22	2.5	24	86	8	75	13	0	13	72	1.13
10295019--10295155	46	2.8	47	82	9	150	40	21	11	27	1.87
10295066--10295156	46	2.0	47	93	2	157	39	23	12	25	1.89
10295127--10295189	28	2.2	29	85	5	92	38	22	11	28	1.88
10295081--10295231	76	2.0	74	85	5	205	37	22	11	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10295156--10295379	48	4.7	47	84	6	240	37	23	10	28	1.88
10295168--10295379	93	2.2	94	82	7	243	37	23	9	28	1.87
10305959--10306010	20	2.6	20	81	6	61	5	1	17	75	1.10
10307393--10307436	20	2.3	20	88	7	65	29	2	0	68	1.02
10308806--10308847	13	3.2	13	86	10	50	14	0	2	83	0.75
10308840--10308891	7	7.0	7	79	12	50	23	0	5	71	1.07
10312073--10312118	24	1.9	24	90	0	74	41	2	4	52	1.33
10314583--10314632	16	3.1	16	78	18	50	10	12	10	68	1.41
10316431--10316483	26	2.0	26	85	3	70	79	1	13	5	0.99
10318696--10318734	19	2.1	19	85	9	53	33	0	5	61	1.18
10320091--10320130	15	2.5	16	84	12	55	60	5	0	35	1.19
10322299--10322350	21	2.5	21	81	6	61	61	3	1	32	1.25
10322556--10322597	21	2.0	21	86	9	59	45	0	4	50	1.23
10324862--10324905	14	3.1	14	87	9	63	31	0	47	20	1.50
10335126--10335158	17	1.9	17	93	0	57	9	15	6	69	1.34
10337605--10337776	19	9.2	19	71	14	72	58	6	1	33	1.33
10337568--10337899	9	35.8	9	67	16	92	58	6	3	32	1.40
10337689--10337755	34	2.0	34	85	5	91	61	1	2	34	1.20
10337790--10337818	10	2.7	11	89	10	51	48	0	6	44	1.29
10337653--10337831	38	4.8	37	73	18	108	58	4	2	34	1.30
10338292--10338351	30	2.0	30	86	0	84	43	1	3	51	1.28
10338221--10338354	9	14.8	9	64	18	55	42	3	2	51	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10338309--10338372	30	2.1	29	83	11	76	42	1	7	48	1.41
10338468--10338768	10	29.7	10	64	16	68	30	2	8	58	1.42
10338643--10338748	20	5.2	20	73	17	78	31	2	8	57	1.43
10338717--10338768	19	2.8	17	81	18	59	30	1	1	65	1.14
10338676--10338766	9	9.4	9	70	19	51	31	1	6	60	1.29
10344344--10344382	21	1.9	20	84	5	51	53	0	0	46	1.00
10344564--10344604	19	2.2	19	81	0	55	29	12	7	51	1.66
10346598--10346861	131	2.0	131	94	0	465	26	15	14	43	1.85
10349350--10349415	34	1.9	34	87	0	96	24	18	10	46	1.80
10350856--10350906	23	2.2	23	82	0	66	45	7	23	23	1.79
10357288--10357348	22	2.8	22	87	0	86	27	21	22	27	1.99
10357794--10357837	22	2.0	22	82	8	54	36	13	11	38	1.81
10357916--10357969	19	2.8	19	97	0	99	22	18	22	37	1.95
10358341--10358397	22	2.5	23	83	11	64	75	14	3	7	1.14
10358683--10358711	4	7.2	4	100	0	58	72	0	0	27	0.85
10364667--10364700	2	17.5	2	87	6	52	47	0	0	52	1.00
10365596--10365633	18	2.1	18	85	9	51	78	7	10	2	1.04
10365622--10365664	23	1.9	23	85	4	61	76	2	11	9	1.10
10368986--10369032	24	2.0	24	86	0	67	27	14	10	46	1.78
10369212--10369245	15	2.3	15	94	0	59	76	2	5	14	1.09
10370954--10371018	20	3.2	20	91	8	112	52	0	0	47	1.00
10374398--10374457	26	2.3	26	80	5	68	41	0	5	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10374508--10374561	25	2.2	24	83	9	65	75	0	12	11	1.04
10374509--10374553	15	3.0	14	84	12	54	75	0	13	11	1.05
10374506--10374542	16	2.4	16	82	17	51	78	0	10	10	0.97
10380941--10380975	15	2.3	15	95	0	61	74	2	8	14	1.17
10382628--10382666	8	4.9	8	81	12	53	38	0	0	61	0.96
10382632--10382707	20	3.2	24	73	21	63	46	0	1	52	1.08
10382660--10382722	20	3.2	20	86	4	94	50	0	1	47	1.10
10385171--10385269	51	1.9	51	93	0	171	53	10	20	16	1.71
10386095--10386128	17	2.0	17	88	0	50	38	8	5	47	1.59
10386368--10386408	19	2.2	19	86	8	57	70	4	0	24	1.06
10388138--10388176	8	4.9	8	81	12	53	38	0	0	61	0.96
10388142--10388195	24	2.2	25	81	12	60	44	0	0	55	0.99
10390875--10390955	25	3.1	26	70	21	71	45	2	3	48	1.33
10391630--10391671	22	1.9	22	85	9	59	45	0	2	52	1.13
10391718--10391750	13	2.6	13	95	4	59	54	0	0	45	0.99
10391729--10391770	19	2.2	19	91	8	68	52	0	0	47	1.00
10391783--10391835	20	2.5	20	85	11	63	71	3	1	22	1.12
10398789--10398834	23	2.0	23	95	0	83	63	0	0	36	0.95
10401822--10401865	19	2.3	19	84	7	54	68	0	6	25	1.14
10402655--10402719	34	2.0	31	82	8	76	72	4	7	15	1.24
10403047--10403092	18	2.6	18	85	0	65	32	8	19	39	1.82
10403079--10403243	86	1.9	86	86	2	233	31	12	22	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10404505--10404555	12	4.5	11	80	7	59	3	1	5	88	0.69
10404505--10404556	21	2.4	22	84	12	72	3	1	7	86	0.76
10409454--10409515	19	3.2	19	77	13	63	72	1	3	22	1.08
10409454--10409566	6	18.2	6	72	17	63	71	1	5	21	1.15
10409459--10409513	25	2.2	25	81	12	60	70	1	3	23	1.12
10409467--10409551	24	3.6	24	72	15	79	71	2	4	21	1.15
10409507--10409563	30	1.9	30	85	7	80	73	1	7	17	1.14
10409467--10409558	45	2.0	45	81	6	105	71	2	5	20	1.16
10409519--10409589	23	3.1	22	80	9	72	76	0	9	14	1.03
10409467--10409573	18	6.2	17	74	15	78	71	1	7	19	1.20
10413616--10413653	18	2.1	18	90	9	60	76	0	0	23	0.79
10423239--10423299	17	3.1	19	79	18	63	65	1	3	29	1.18
10424721--10424929	111	1.9	111	81	11	259	40	6	14	38	1.72
10424846--10425039	85	2.3	86	79	5	196	35	5	17	41	1.72
10425448--10425496	16	2.9	16	77	22	55	24	2	14	59	1.46
10428960--10428990	3	10.7	3	93	6	55	29	0	0	70	0.87
10428960--10429010	14	3.5	14	84	12	59	23	0	1	74	0.92
10428957--10429000	17	2.5	17	86	13	63	27	0	0	72	0.85
10430508--10430583	18	4.3	17	71	21	50	14	2	5	77	1.05
10430518--10430577	23	2.7	23	82	7	61	15	3	5	76	1.08
10430539--10430582	23	2.0	23	95	4	81	15	0	4	79	0.89
10438582--10438640	23	2.7	21	73	19	57	37	6	13	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10438738--10438801	21	3.0	22	75	13	69	39	3	17	40	1.65
10438864--10438954	20	4.3	20	76	12	69	26	6	19	47	1.74
10439140--10439172	17	1.9	17	93	0	57	27	15	18	39	1.90
10444919--10444972	21	2.6	21	87	0	81	27	22	27	22	1.99
10449374--10449530	78	2.0	78	92	0	260	35	16	16	31	1.92
10449655--10449697	3	14.3	3	100	0	86	32	0	0	67	0.91
10449720--10449865	21	7.1	21	77	7	122	25	8	8	58	1.55
10449728--10449910	21	8.6	22	69	21	81	25	6	7	60	1.49
10449793--10449837	19	2.3	20	88	3	65	28	11	2	57	1.45
10449967--10450032	24	2.8	24	82	11	66	25	7	16	50	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117