genome.fa.s90.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  24  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6662606--6662648	16	2.8	16	85	3	52	46	2	0	51	1.13
6672021--6672049	14	2.0	15	93	6	51	82	0	3	13	0.79
6672455--6672517	20	3.2	19	84	6	72	80	6	4	7	1.00
6672464--6672498	13	2.8	12	87	8	52	82	5	5	5	0.93
6672753--6672814	22	2.7	24	83	14	69	62	1	1	33	1.14
6672751--6672814	12	4.8	13	75	19	53	62	1	1	34	1.14
6673090--6673139	15	3.1	15	75	13	55	76	2	14	8	1.10
6673941--6673980	19	2.1	19	86	9	55	77	0	5	17	0.94
6675093--6675119	6	4.5	6	100	0	54	85	0	14	0	0.61
6675635--6675847	12	17.2	12	67	24	58	28	2	1	66	1.16
6675684--6675847	4	41.2	4	71	16	71	27	3	1	68	1.12
6675626--6675786	65	2.6	62	73	18	147	28	2	3	65	1.20
6675734--6675807	28	2.6	28	86	4	94	31	0	1	67	0.99
6675638--6675845	62	3.5	58	75	14	165	28	2	1	66	1.16
6675745--6675843	50	1.9	53	83	6	132	29	2	0	68	1.00
6675809--6675874	28	2.5	26	87	9	89	25	9	0	65	1.22
6676749--6676854	9	11.4	9	68	22	51	18	4	2	73	1.13
6676789--6676854	17	4.2	16	72	16	59	13	7	1	77	1.05
6676836--6676877	22	1.9	22	85	9	59	14	11	2	71	1.24
6676890--6677169	59	4.8	58	81	9	313	46	7	12	33	1.69
6683859--6683915	1	57.0	1	78	0	60	89	1	0	8	0.55
6683857--6683910	9	5.8	9	84	6	72	88	1	0	9	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6683857--6683915	19	3.1	18	88	11	82	88	1	0	10	0.60
6685619--6685736	41	2.9	41	78	7	132	38	16	11	33	1.85
6685855--6685956	23	4.7	23	74	13	99	27	21	19	31	1.97
6685862--6686022	22	7.4	22	76	10	143	27	19	18	33	1.96
6685902--6685979	21	3.8	20	70	20	61	29	19	15	35	1.92
6685879--6685997	42	2.8	43	87	2	177	29	18	17	34	1.94
6686093--6686308	22	9.8	23	76	10	168	25	22	21	29	1.99
6686095--6686259	43	3.8	44	81	10	212	26	21	20	30	1.98
6686095--6686300	88	2.3	88	92	1	342	26	22	20	29	1.99
6686373--6686418	22	2.0	23	87	4	67	21	21	23	32	1.98
6686271--6686470	110	1.8	110	82	2	258	23	19	20	38	1.94
6686496--6686588	47	2.0	48	91	2	152	24	11	26	36	1.90
6686596--6687030	47	9.2	47	84	5	497	28	12	24	35	1.91
6687569--6687604	14	2.6	14	86	0	54	69	16	13	0	1.19
6691219--6691269	21	2.5	20	81	12	59	62	0	1	35	1.06
6691693--6691735	20	2.2	20	87	4	61	51	0	2	46	1.13
6693438--6693493	29	2.0	28	82	6	69	50	1	3	44	1.29
6695135--6695185	2	26.0	2	88	4	59	47	5	1	45	1.38
6698464--6698690	76	3.0	76	95	0	400	42	14	17	25	1.87
6701416--6701571	60	2.6	62	79	11	182	33	10	5	49	1.62
6701610--6701835	60	3.9	57	79	8	210	33	11	6	49	1.63
6701669--6701833	55	3.0	55	80	8	192	33	10	6	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6702381--6702427	24	2.0	24	82	0	58	51	14	6	27	1.67
6702920--6703211	44	6.7	44	80	4	313	47	19	10	21	1.79
6702924--6703210	133	2.2	130	84	6	357	48	20	9	21	1.78
6703477--6703509	16	2.1	16	94	0	57	39	21	18	21	1.93
6709423--6709452	15	2.0	15	93	0	51	50	0	0	50	1.00
6717072--6717207	59	2.3	58	83	5	164	35	7	5	52	1.52
6717137--6717329	72	2.7	72	85	4	246	39	7	3	49	1.47
6717287--6717451	55	3.0	53	81	11	188	33	11	5	49	1.62
6717977--6718003	11	2.5	11	100	0	54	70	7	0	22	1.12
6717977--6718029	12	4.5	12	78	2	54	64	9	0	26	1.24
6717977--6718029	24	2.2	24	80	3	63	64	9	0	26	1.24
6718309--6718350	3	14.0	3	100	0	84	66	0	0	33	0.92
6719989--6720046	22	2.6	22	81	10	66	53	0	0	46	1.00
6721596--6721645	21	2.6	19	87	9	66	58	4	0	38	1.17
6721637--6721672	4	9.2	4	87	6	56	75	2	0	22	0.94
6722049--6722097	19	2.5	20	80	12	57	16	4	20	59	1.53
6723785--6723817	15	2.2	15	100	0	66	27	33	0	39	1.57
6725613--6725654	21	1.9	23	85	9	61	35	4	2	57	1.33
6729749--6729783	17	2.1	17	94	0	61	62	0	5	31	1.18
6738680--6738713	18	1.9	18	88	5	52	85	5	2	5	0.83
6739113--6739149	13	2.7	14	88	12	51	81	0	5	13	0.86
6739092--6739138	22	2.2	21	85	7	60	80	2	6	10	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6739618--6739662	21	2.1	21	84	8	56	77	0	4	17	0.92
6739571--6739784	119	1.8	117	80	9	254	63	5	6	24	1.40
6739735--6739785	15	3.2	16	76	20	54	82	1	9	5	0.91
6741079--6741122	22	2.0	22	81	0	52	40	0	9	50	1.34
6741171--6741217	11	4.4	11	78	2	51	31	2	12	53	1.51
6741165--6741244	19	3.9	21	72	9	65	37	3	7	51	1.48
6741128--6741260	22	6.2	22	71	7	76	38	5	4	51	1.45
6741219--6741280	22	2.8	22	85	4	72	38	4	1	54	1.31
6741242--6741292	22	2.3	22	86	6	68	31	9	3	54	1.51
6741321--6741456	22	6.2	21	72	13	78	37	7	7	47	1.59
6741363--6741457	44	2.2	43	84	5	120	40	6	8	45	1.60
6741599--6741654	11	5.1	11	80	0	58	41	8	3	46	1.52
6741592--6741659	22	3.1	22	86	0	82	41	8	2	47	1.50
6741745--6741806	22	2.8	23	68	7	56	32	12	6	48	1.67
6742691--6742751	26	2.5	25	78	7	72	37	4	6	50	1.50
6743120--6743465	115	3.0	115	97	0	647	52	6	18	22	1.67
6744408--6744468	6	10.2	6	91	7	97	81	0	18	0	0.68
6748773--6748829	22	2.7	20	76	15	60	64	0	1	33	1.04
6748771--6748831	24	2.6	24	77	15	65	65	0	1	32	1.02
6749897--6749923	7	3.9	7	100	0	54	29	25	14	29	1.95
6758420--6758479	17	3.4	17	73	13	66	36	18	26	18	1.94
6780946--6780983	17	2.2	17	90	0	58	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6781057--6781116	29	2.1	29	90	3	95	51	1	1	45	1.21
6787046--6787102	6	9.5	6	94	0	96	0	19	0	80	0.71
6790152--6790188	19	2.0	20	89	10	60	5	2	13	78	1.03
6790139--6790474	162	2.1	163	95	1	611	36	7	11	44	1.69
6790793--6790850	25	2.3	25	82	5	64	77	1	5	15	1.02
6791412--6791441	2	15.0	2	100	0	60	50	0	0	50	1.00
6791524--6791583	19	3.2	19	77	17	54	50	1	0	48	1.11
6797732--6797860	66	2.0	65	87	1	186	35	11	33	19	1.88
6802037--6802098	22	2.8	23	70	7	56	48	8	11	32	1.68
6802137--6802425	22	13.2	22	66	14	98	46	5	9	38	1.60
6802365--6802463	44	2.3	43	82	5	119	45	8	9	37	1.66
6802365--6802458	22	4.3	22	79	14	88	45	8	7	38	1.63
6802541--6802601	22	2.8	22	85	7	79	57	1	3	37	1.25
6804052--6804086	15	2.5	15	90	9	56	0	8	2	88	0.61
6804038--6804095	23	2.5	22	80	2	62	6	12	1	79	1.00
6804038--6804086	15	3.1	15	79	5	53	2	12	2	83	0.82
6804052--6804276	118	1.9	115	80	9	260	25	6	5	62	1.43
6804684--6804735	13	3.7	13	76	18	59	13	5	0	80	0.88
6804684--6804735	7	7.3	7	78	18	54	13	5	0	80	0.88
6804684--6804743	22	2.8	22	78	16	63	13	6	1	78	1.02
6804679--6804748	30	2.3	30	85	9	90	12	7	1	78	1.01
6805039--6805078	2	21.5	2	80	14	50	42	0	2	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6806032--6806061	15	2.0	15	93	0	51	13	3	0	83	0.77
6806032--6806073	8	5.4	8	82	5	50	16	2	2	78	0.96
6806837--6806863	4	6.8	4	100	0	54	77	0	0	22	0.76
6807686--6807734	24	2.0	24	92	0	80	38	8	26	26	1.84
6816771--6816851	22	3.7	23	70	6	60	48	4	12	34	1.62
6816919--6816957	11	3.5	11	85	0	51	46	2	7	43	1.46
6817099--6817205	22	5.0	21	75	10	90	44	8	8	38	1.65
6817098--6817211	44	2.6	43	83	4	131	46	7	7	37	1.62
6817099--6817215	43	2.7	43	84	4	137	46	7	7	38	1.61
6817274--6817334	22	2.8	22	82	7	70	55	1	4	37	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117