genome.fa.s90.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  111  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20036064--20036128	26	2.5	26	100	0	130	30	20	24	24	1.98
20036977--20037028	26	2.0	26	92	0	86	28	17	25	28	1.97
20037717--20037769	26	2.0	26	88	0	79	28	16	24	30	1.97
20038605--20038656	26	2.0	26	92	3	88	26	19	25	28	1.98
20039486--20039538	26	2.0	26	92	0	88	28	22	22	26	1.99
20037003--20041823	897	5.4	892	85	5	6149	24	23	25	26	2.00
20040383--20040435	26	2.0	26	92	0	88	26	18	24	30	1.98
20041286--20041338	26	2.0	26	92	0	88	28	22	24	24	2.00
20042027--20042079	26	2.0	26	96	0	97	26	22	24	26	2.00
20042926--20042978	26	2.0	26	96	0	97	26	18	26	28	1.98
20043828--20043879	26	2.0	26	88	0	77	26	21	25	26	1.99
20044713--20044764	26	2.0	26	92	0	86	25	21	26	26	1.99
20041824--20045255	893	3.8	887	86	5	4337	25	24	25	25	2.00
20045392--20045443	26	2.0	26	88	3	79	28	19	23	28	1.98
20047140--20047192	26	2.0	26	92	0	88	30	16	24	28	1.97
20048064--20048116	26	2.0	26	92	0	88	26	16	26	30	1.97
20046262--20049275	924	3.3	901	83	6	3679	25	23	25	25	2.00
20049777--20049826	26	1.9	26	100	0	100	28	22	26	24	1.99
20050798--20050827	4	7.5	4	92	0	51	0	23	73	3	0.98
20051477--20051555	26	3.0	26	85	3	106	30	18	22	27	1.98
20054507--20054596	22	4.1	21	73	13	65	74	0	18	6	1.03
20054519--20054590	22	3.3	21	75	9	72	77	0	16	5	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20054540--20054593	17	3.3	16	80	12	65	83	0	12	3	0.78
20055838--20056233	42	9.5	42	89	2	602	25	17	21	35	1.95
20055838--20056234	83	4.8	83	92	1	652	25	17	21	35	1.95
20056215--20056251	17	2.2	17	100	0	74	37	10	8	43	1.69
20056174--20056292	58	2.0	59	93	1	204	27	15	18	38	1.91
20056233--20056484	41	6.1	41	88	3	380	23	15	23	38	1.92
20056091--20056375	141	2.0	142	93	2	493	25	15	20	38	1.92
20056233--20056484	83	3.0	82	90	2	389	23	15	23	38	1.92
20056735--20056852	21	5.7	21	67	24	63	28	1	3	66	1.18
20057894--20057933	17	2.4	16	84	8	53	22	5	0	72	1.04
20057920--20057977	14	4.2	14	76	8	57	13	5	1	79	0.98
20057923--20057970	17	2.7	18	78	12	55	14	4	2	79	0.98
20057985--20058277	58	4.9	59	84	5	378	44	7	13	34	1.71
20057985--20058277	118	2.5	117	86	4	401	44	7	13	34	1.71
20058070--20058161	28	3.1	28	62	27	64	40	5	17	36	1.73
20060667--20060719	26	2.0	26	85	0	70	30	20	22	26	1.98
20058781--20067652	895	9.9	885	83	6	10320	25	24	24	25	2.00
20061569--20061618	26	1.9	26	91	0	82	30	12	26	32	1.92
20061800--20061833	4	8.5	4	86	0	50	5	26	67	0	1.13
20062484--20062536	26	2.0	26	92	0	88	28	16	26	28	1.97
20063265--20063297	11	3.0	11	90	0	57	12	27	33	27	1.92
20066022--20066074	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20066927--20066978	25	2.0	26	96	3	97	26	21	25	26	1.99
20066952--20068407	755	1.9	748	87	2	2143	26	22	24	27	2.00
20070337--20070389	26	2.0	26	92	0	88	26	16	26	30	1.97
20072119--20072171	26	2.0	26	92	0	88	32	18	20	28	1.97
20073886--20073938	26	2.0	26	100	0	106	26	20	26	26	1.99
20071232--20079646	887	9.4	901	84	4	10391	25	23	25	25	2.00
20077450--20077505	26	2.2	26	90	0	85	28	19	21	30	1.98
20078338--20078389	26	2.0	26	96	0	95	26	17	26	28	1.97
20082155--20082207	26	2.0	26	100	0	106	26	20	26	26	1.99
20080653--20093369	904	14.2	901	86	3	16505	25	24	24	25	2.00
20083949--20084001	26	2.0	26	88	0	79	28	16	26	28	1.97
20085719--20085768	25	2.0	26	96	4	93	28	20	24	28	1.99
20087507--20087559	26	2.0	26	100	0	106	26	20	26	26	1.99
20088402--20088454	26	2.0	26	96	0	97	26	18	26	28	1.98
20089292--20089344	26	2.0	26	96	0	97	24	20	28	26	1.99
20090178--20090230	26	2.0	26	100	0	106	26	20	26	26	1.99
20091061--20091110	26	1.9	26	100	0	100	32	20	22	26	1.98
20091963--20092015	26	2.0	26	92	0	88	30	18	22	28	1.98
20092862--20092914	26	2.0	26	96	0	97	30	20	20	28	1.98
20093695--20093747	26	2.0	26	92	0	88	26	24	26	22	2.00
20094589--20094639	26	2.0	26	96	0	93	27	21	23	27	1.99
20095477--20095529	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20096343--20096393	26	2.0	26	96	0	93	29	13	27	29	1.94
20097232--20097310	26	3.0	26	98	0	149	26	22	26	24	2.00
20100588--20100640	26	2.0	26	92	0	88	30	20	22	26	1.98
20101407--20101458	26	2.0	26	92	0	86	28	17	25	28	1.97
20100207--20101830	818	2.0	808	85	3	2155	26	24	25	23	2.00
20101014--20105215	904	4.7	901	88	2	5630	25	24	24	25	2.00
20105019--20105070	26	2.0	26	92	0	86	28	17	25	28	1.97
20105252--20106723	716	2.1	707	88	3	2229	26	23	23	26	2.00
20106697--20106749	26	2.0	26	96	0	97	26	18	26	28	1.98
20107598--20107650	26	2.0	26	88	0	79	28	16	24	30	1.97
20105978--20111664	874	6.4	889	85	5	7395	24	23	25	25	2.00
20109378--20109429	25	2.0	26	92	3	88	28	21	23	26	1.99
20110253--20110305	26	2.0	26	96	0	97	26	20	24	28	1.99
20111127--20111179	26	2.0	26	88	0	79	28	20	24	26	1.99
20111868--20111920	26	2.0	26	92	0	88	26	20	24	28	1.99
20111665--20115113	887	3.9	887	86	3	4426	25	23	24	25	2.00
20114549--20114600	26	2.0	26	88	3	79	28	19	23	28	1.98
20116210--20116287	21	4.0	20	71	20	65	6	19	0	74	1.03
20116207--20116249	8	5.1	8	78	10	50	4	16	0	79	0.90
20116226--20116260	12	2.8	12	91	4	52	0	14	0	85	0.59
20120025--20120138	61	1.9	60	87	8	169	32	14	7	45	1.73
20120149--20120204	13	4.4	13	76	8	53	75	1	7	16	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20120602--20120640	20	2.0	20	89	0	60	17	17	23	41	1.91
20121249--20121292	10	4.1	10	83	13	52	72	0	0	27	0.85
20121251--20121411	16	10.2	16	66	25	69	67	3	1	27	1.18
20121346--20121402	4	14.8	4	75	17	50	70	1	1	26	1.07
20122268--20122318	26	2.0	26	96	0	93	27	27	15	29	1.96
20123146--20123198	26	2.0	26	85	7	72	32	28	15	24	1.95
20121534--20124424	901	3.2	894	88	3	4195	25	25	24	25	2.00
20124048--20124107	26	2.4	26	77	5	61	31	20	20	28	1.97
20126612--20126664	26	2.0	26	92	0	88	30	26	16	26	1.97
20127312--20127346	4	8.8	4	87	0	52	2	71	22	2	1.13
20124420--20130973	883	7.4	870	84	5	7926	25	25	24	24	2.00
20128394--20128446	26	2.0	26	100	0	106	26	26	20	26	1.99
20129307--20130973	903	1.8	898	88	2	2574	26	24	24	24	2.00
20131797--20131846	26	1.9	26	95	0	91	26	26	20	28	1.99
20130920--20133144	902	2.5	899	88	1	3299	24	24	24	25	2.00
20132696--20132748	26	2.0	26	89	7	81	30	20	18	30	1.97
20134126--20134178	26	2.0	26	88	0	79	24	22	22	30	1.99
20135008--20135060	26	2.0	26	92	0	88	28	24	18	28	1.98
20135813--20135862	26	1.9	26	100	0	100	24	26	22	28	1.99
20137522--20137574	26	2.0	26	92	0	88	30	26	16	26	1.97
20138425--20138477	26	2.0	26	92	0	88	26	24	18	30	1.98
20136645--20143982	903	8.3	902	86	5	9255	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20140173--20140224	26	2.0	25	88	3	77	28	23	19	28	1.98
20141071--20141122	26	2.0	26	88	0	77	28	25	19	26	1.98
20141941--20141992	26	2.0	26	88	0	77	28	25	19	26	1.98
20142404--20142456	27	2.0	27	84	0	70	56	11	5	26	1.56
20142828--20142880	26	2.0	26	92	0	88	28	24	18	28	1.98
20139326--20143982	900	5.3	896	87	4	6011	24	24	24	25	2.00
20145333--20145385	26	2.0	26	96	0	97	28	24	20	26	1.99
20147128--20147179	26	2.0	26	92	3	88	28	25	19	26	1.98
20148935--20149013	26	3.0	26	100	0	158	26	26	20	26	1.99
20145333--20151478	913	6.8	912	83	7	6883	25	25	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117