genome.fa.s90.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  96  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18116261--18116676	185	2.2	184	84	3	521	24	27	26	21	1.99
18117366--18117418	26	2.0	26	96	0	97	30	18	22	28	1.98
18118267--18118317	26	2.0	26	96	0	93	25	15	29	29	1.96
18116459--18120117	897	4.1	901	86	2	4966	25	23	24	25	2.00
18120060--18120112	26	2.0	26	88	0	79	28	16	24	30	1.97
18121666--18121718	26	2.0	26	92	0	88	26	20	26	26	1.99
18122560--18122612	26	2.0	26	100	0	106	26	20	26	26	1.99
18124349--18124401	26	2.0	26	85	0	70	32	20	20	26	1.98
18120804--18125531	891	5.3	890	86	2	6234	25	24	25	25	2.00
18126295--18126347	26	2.0	26	96	0	97	26	18	26	28	1.98
18127194--18127244	26	2.0	26	96	0	93	27	17	25	29	1.98
18125592--18128223	903	2.9	896	87	2	3733	25	23	25	25	2.00
18128099--18128151	26	2.0	26	88	0	79	30	18	24	26	1.98
18128437--18128489	26	2.0	26	88	0	79	28	20	24	26	1.99
18129165--18129220	26	2.2	26	93	0	94	28	17	23	30	1.97
18130044--18130095	26	2.0	25	92	3	86	28	21	21	28	1.98
18130931--18130985	25	2.2	26	90	3	85	27	18	23	30	1.97
18128463--18135999	892	8.4	896	84	4	9405	25	24	24	25	2.00
18131833--18131911	26	3.0	26	83	0	104	29	18	24	27	1.98
18132762--18132814	26	2.0	26	92	0	88	26	18	24	30	1.98
18133666--18133718	26	2.0	26	96	0	97	28	20	24	26	1.99
18137150--18137200	26	2.0	26	92	0	84	27	17	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18137475--18138126	324	2.0	324	99	0	1277	28	17	16	37	1.91
18138354--18138406	26	2.0	26	96	0	97	26	18	26	28	1.98
18139246--18139296	26	2.0	26	92	0	84	29	17	27	25	1.98
18140149--18140201	26	2.0	26	96	0	97	26	18	26	28	1.98
18137821--18142035	893	4.7	899	86	3	5829	25	23	25	26	2.00
18141051--18141101	26	2.0	26	88	0	75	29	19	21	29	1.98
18141949--18142001	26	2.0	26	100	0	106	26	20	26	26	1.99
18144463--18144515	26	2.0	26	100	0	106	26	20	26	26	1.99
18142053--18147666	904	6.3	887	84	5	6691	25	23	24	25	2.00
18147156--18147208	26	2.0	26	96	0	97	26	18	26	28	1.98
18148521--18148573	26	2.0	26	92	0	88	22	16	30	30	1.96
18151478--18151530	26	2.0	26	92	0	88	28	16	26	28	1.97
18149955--18152428	882	2.8	877	89	2	3672	25	24	24	26	2.00
18154648--18154700	26	2.0	26	96	0	97	26	18	26	28	1.98
18153926--18156473	898	2.8	896	86	4	3504	25	23	24	25	2.00
18156418--18156830	163	2.6	160	80	4	445	22	28	29	19	1.98
18158198--18158253	26	2.2	26	100	0	112	26	19	25	28	1.99
18158724--18160333	675	2.4	677	96	1	2912	24	23	23	28	2.00
18160429--18160481	26	2.0	26	96	0	97	26	18	24	30	1.98
18161331--18161383	26	2.0	26	88	0	79	26	20	22	30	1.98
18162241--18162293	26	2.0	26	96	0	97	28	16	26	28	1.97
18159681--18162765	901	3.4	899	87	2	4445	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18163588--18163640	26	2.0	26	92	0	88	30	18	26	24	1.98
18164394--18164446	26	2.0	26	96	0	97	28	20	24	26	1.99
18164935--18164987	26	2.0	26	92	0	88	28	16	26	28	1.97
18165834--18165886	26	2.0	26	88	0	79	28	16	24	30	1.97
18167521--18167576	26	2.2	26	96	0	103	26	17	25	30	1.97
18168420--18168472	26	2.0	26	96	0	97	24	22	26	26	2.00
18168564--18177731	872	10.4	872	84	6	10337	25	23	24	26	2.00
18174102--18174154	26	2.0	26	89	7	81	28	20	24	26	1.99
18174987--18175039	26	2.0	26	96	0	97	26	18	26	28	1.98
18175874--18175948	26	3.0	26	88	11	120	30	17	26	25	1.97
18177705--18177757	26	2.0	26	92	0	88	28	20	22	28	1.99
18177892--18177942	26	2.0	26	92	0	84	31	17	25	25	1.97
18177682--18178101	185	2.3	185	83	3	531	23	28	27	20	1.99
18180048--18180100	26	2.0	26	88	0	79	24	16	28	30	1.97
18182670--18182721	26	2.0	26	96	3	97	26	21	26	25	1.99
18183567--18183619	26	2.0	26	96	0	97	26	18	26	28	1.98
18184475--18184607	21	6.6	20	68	24	75	30	2	2	65	1.17
18184460--18184607	42	3.7	37	70	24	99	29	2	2	66	1.17
18184471--18184594	17	7.5	18	69	19	58	29	2	2	65	1.18
18185201--18185250	20	2.5	20	83	0	64	44	24	14	18	1.86
18185598--18185640	21	2.0	21	82	8	52	11	2	6	79	1.02
18185652--18185691	17	2.4	16	84	8	53	22	5	0	72	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18185678--18185720	17	2.5	17	81	7	52	11	4	2	81	0.93
18185680--18185728	22	2.3	22	80	16	59	14	6	2	77	1.05
18185750--18185968	58	3.8	57	89	8	327	45	7	12	33	1.71
18187946--18191286	903	3.7	898	87	3	4464	25	24	24	25	2.00
18190356--18190408	26	2.0	26	92	0	88	28	18	24	28	1.98
18191006--18191595	302	2.0	299	88	3	882	25	28	25	21	1.99
18191549--18191627	26	3.0	26	96	0	140	26	24	24	25	2.00
18192466--18192518	26	2.0	26	92	0	88	28	18	24	28	1.98
18191575--18195172	909	4.0	901	84	5	4579	25	24	24	25	2.00
18194242--18194294	26	2.0	26	88	0	79	28	16	28	26	1.97
18195126--18195500	159	2.4	159	83	4	436	23	29	27	19	1.98
18196184--18196236	26	2.0	26	92	0	88	28	18	24	28	1.98
18196334--18196381	21	2.3	21	100	0	96	18	33	14	33	1.91
18197103--18197159	26	2.3	26	88	11	84	24	21	24	29	1.99
18197974--18198022	26	1.9	25	95	4	89	28	18	28	24	1.98
18199523--18199575	26	2.0	26	96	0	97	26	18	26	28	1.98
18200225--18200277	26	2.0	26	92	0	88	30	20	20	28	1.98
18202718--18202770	26	2.0	26	92	0	88	28	18	24	28	1.98
18203619--18203671	26	2.0	26	88	0	79	26	16	24	32	1.97
18201979--18216222	899	16.0	901	86	3	18601	25	24	25	25	2.00
18205418--18205475	26	2.2	27	90	3	91	25	17	25	31	1.97
18208058--18208110	26	2.0	26	92	0	88	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18208967--18209017	26	2.0	24	92	7	84	25	21	25	27	1.99
18209868--18209920	26	2.0	26	96	0	97	26	18	26	28	1.98
18210741--18210793	26	2.0	26	85	0	70	28	22	22	26	1.99
18211638--18211690	26	2.0	26	96	0	97	28	20	24	26	1.99
18212537--18212589	26	2.0	26	96	0	97	28	20	26	24	1.99
18213416--18213468	26	2.0	26	100	0	106	26	20	26	26	1.99
18214308--18214360	26	2.0	26	96	0	97	28	20	24	26	1.99
18215204--18215256	26	2.0	26	92	0	88	30	20	22	26	1.98
18215932--18216534	312	1.9	311	85	2	834	23	31	26	18	1.97
18217310--18217362	26	2.0	26	88	0	79	30	20	24	24	1.99
18218213--18218265	26	2.0	26	88	0	79	24	20	24	30	1.99
18216243--18219337	903	3.4	902	87	2	4260	24	25	25	24	2.00
18219117--18219169	26	2.0	26	88	0	79	26	20	24	28	1.99
18220618--18220669	26	2.0	26	88	7	79	28	15	25	30	1.96
18219334--18221544	889	2.5	885	85	5	2898	25	24	24	25	2.00
18220794--18222970	717	3.0	714	89	3	3316	26	23	24	26	2.00
18222944--18222996	26	2.0	26	96	0	97	28	20	24	26	1.99
18222206--18224871	885	3.0	888	86	4	3445	25	23	25	25	2.00
18224637--18224662	11	2.4	11	100	0	52	19	30	30	19	1.96
18224741--18224793	26	2.0	26	92	0	88	28	18	24	28	1.98
18225477--18225529	26	2.0	26	96	0	97	26	18	26	28	1.98
18225658--18227124	719	2.0	717	92	1	2404	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18227098--18227153	26	2.2	26	96	0	103	28	19	23	28	1.98
18227990--18228042	26	2.0	26	88	0	79	32	20	20	26	1.98
18228884--18228936	26	2.0	26	92	0	88	30	20	22	26	1.98
18226352--18232681	902	7.1	901	85	4	8214	25	24	24	25	2.00
18232896--18232948	26	2.0	26	92	0	88	26	16	26	30	1.97
18233785--18233837	26	2.0	26	96	0	97	26	18	26	28	1.98
18232710--18237862	869	5.8	878	84	5	5973	26	24	24	25	2.00
18234651--18234706	26	2.2	26	93	0	94	26	17	23	32	1.97
18235520--18235572	26	2.0	26	92	0	88	30	20	22	26	1.98
18236405--18236457	26	2.0	26	96	0	97	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117