genome.fa.s90.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  47  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11054364--11054510	67	2.2	66	88	1	213	37	17	13	31	1.88
11054502--11054671	67	2.6	67	88	2	238	37	15	15	32	1.89
11054417--11054608	98	1.9	99	91	1	314	35	17	15	31	1.92
11054921--11054973	21	2.6	20	91	5	88	47	1	0	50	1.12
11055505--11055547	12	3.5	12	87	6	59	0	11	2	86	0.67
11055859--11056001	42	3.4	42	91	1	214	33	13	19	32	1.91
11056008--11056038	15	2.1	15	100	0	62	48	12	19	19	1.81
11056032--11056107	34	2.2	35	90	2	118	34	10	21	34	1.87
11055846--11056174	38	8.3	38	78	9	211	35	12	18	33	1.88
11056138--11056353	94	2.3	94	94	1	373	35	12	16	35	1.87
11056188--11056337	44	3.3	44	69	17	142	34	12	18	34	1.89
11056368--11056431	33	1.9	33	90	0	101	28	18	18	34	1.95
11056571--11056638	33	2.1	32	86	2	91	30	13	17	38	1.88
11056643--11056752	33	3.3	33	78	8	107	35	18	16	30	1.93
11057674--11057711	14	2.8	14	84	15	53	7	10	0	81	0.87
11057735--11057764	12	2.6	11	94	5	51	0	6	3	90	0.56
11057722--11057761	18	2.3	18	87	12	57	2	10	5	82	0.91
11057734--11057770	19	1.9	18	89	10	56	0	5	5	89	0.60
11058094--11058136	19	2.3	19	88	8	61	0	2	9	88	0.60
11058094--11058169	20	3.6	20	76	11	71	2	6	11	78	1.03
11058094--11058129	11	3.4	11	92	3	56	0	2	5	91	0.49
11058253--11058290	20	1.9	20	94	0	67	5	10	0	84	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11058254--11058329	18	4.2	16	77	21	71	5	6	3	84	0.87
11058263--11058327	24	2.9	23	78	13	64	6	6	4	83	0.92
11058254--11058315	9	6.9	9	80	7	72	3	8	3	85	0.81
11060900--11060970	30	2.4	30	90	0	115	33	12	22	30	1.91
11065460--11065868	144	2.8	144	77	5	425	42	11	14	31	1.82
11066171--11066357	67	2.8	68	86	1	268	39	14	13	32	1.86
11066315--11066388	33	2.2	34	85	4	105	31	16	17	35	1.92
11066248--11066458	99	2.1	100	87	1	307	36	15	14	33	1.88
11066185--11066522	166	2.0	167	91	1	543	37	16	14	31	1.89
11066349--11066534	67	2.8	66	89	3	275	37	16	14	31	1.88
11066916--11066960	16	3.1	15	82	14	51	0	15	2	82	0.77
11067268--11067444	44	4.3	42	79	10	152	34	12	19	33	1.89
11067290--11067546	38	6.6	38	77	12	209	33	11	18	36	1.87
11067403--11067516	34	3.2	34	81	13	140	34	10	19	35	1.86
11067332--11067546	113	1.9	111	84	3	288	33	11	18	36	1.87
11067492--11067521	15	2.0	15	100	0	60	40	6	26	26	1.81
11068005--11068088	33	2.5	34	82	5	100	33	15	17	33	1.92
11068557--11068585	12	2.3	13	94	5	51	17	0	0	82	0.66
11068938--11068991	19	2.9	18	86	10	65	7	14	1	75	1.09
11068955--11068992	12	3.3	12	85	10	53	7	15	0	76	1.01
11068997--11069039	19	2.2	20	87	4	61	0	6	9	83	0.80
11068997--11069044	24	2.0	24	88	8	71	0	8	8	83	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11069006--11069044	19	2.1	19	90	0	60	0	7	7	84	0.77
11069009--11069053	20	2.3	19	84	3	54	0	13	8	77	0.98
11069520--11069577	24	2.3	25	80	14	66	5	13	1	79	0.98
11080972--11081023	21	2.5	21	90	6	79	50	0	0	50	1.00
11080972--11081023	22	2.5	22	93	6	90	50	0	0	50	1.00
11080988--11081057	30	2.4	30	80	4	81	55	1	0	42	1.08
11081255--11081341	40	2.2	40	93	0	147	31	8	16	44	1.76
11081870--11081914	3	15.0	3	100	0	90	33	0	0	66	0.92
11082150--11082834	232	2.9	231	85	5	889	42	10	4	42	1.59
11082972--11083056	43	2.0	43	90	4	136	36	20	8	35	1.82
11083060--11083100	17	2.2	18	83	16	57	21	2	9	65	1.34
11084726--11084883	79	2.0	80	92	3	266	41	1	15	40	1.58
11090585--11090615	2	15.5	2	100	0	62	51	0	0	48	1.00
11093279--11093314	8	4.4	8	89	6	54	36	8	13	41	1.75
11100903--11100929	7	3.9	7	100	0	54	85	0	0	14	0.61
11101663--11101696	16	2.1	17	94	5	61	29	11	38	20	1.88
11105504--11105600	48	2.1	48	96	3	180	60	3	10	25	1.43
11105987--11106022	10	3.7	10	92	3	56	0	44	5	50	1.25
11108206--11108260	26	2.1	26	96	0	101	20	16	10	52	1.73
11116934--11116991	21	2.7	21	89	2	89	50	6	13	29	1.68
11117124--11117171	6	7.8	6	80	13	53	14	2	47	35	1.56
11117123--11117171	18	2.6	20	78	15	59	14	2	46	36	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11117161--11117202	20	2.1	20	91	8	68	23	0	30	45	1.53
11117268--11117306	15	2.7	15	88	4	62	12	5	33	48	1.63
11120114--11120165	3	17.3	3	100	0	104	32	0	0	67	0.91
11122578--11122674	37	2.6	37	88	3	133	39	14	18	27	1.90
11122822--11122941	62	1.9	62	86	0	168	40	11	14	33	1.82
11122985--11123120	63	2.2	62	79	1	146	41	13	13	30	1.83
11123191--11123321	51	2.6	48	79	10	138	38	13	14	32	1.85
11127568--11127592	13	1.9	13	100	0	50	24	32	20	24	1.98
11127816--11127983	84	2.0	86	94	2	295	51	4	15	27	1.63
11133998--11134133	72	1.9	72	93	0	236	38	17	11	32	1.86
11135178--11135207	3	10.0	3	92	0	51	33	3	0	63	1.11
11137730--11137763	16	2.1	16	88	0	50	0	14	2	82	0.79
11139552--11139854	47	6.3	47	78	7	275	45	12	13	28	1.80
11139558--11140202	99	6.4	97	72	14	301	46	11	12	28	1.78
11139555--11139842	48	5.9	47	79	8	292	45	13	13	28	1.80
11139574--11139842	145	1.9	141	83	9	344	46	13	12	27	1.79
11139850--11140294	48	9.1	48	73	8	227	46	11	12	29	1.77
11139967--11140239	147	1.9	146	84	6	372	46	11	12	29	1.76
11140917--11140945	14	2.0	15	93	6	51	51	13	6	27	1.66
11142544--11142597	5	10.6	5	78	9	56	1	20	0	77	0.86
11142545--11142597	21	2.6	21	82	14	58	1	20	0	77	0.87
11142548--11142597	26	2.0	25	88	4	73	2	20	0	78	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11144738--11144950	37	5.8	37	79	2	194	37	9	18	34	1.84
11144738--11144935	74	2.7	73	81	3	216	38	9	19	32	1.84
11145187--11145229	19	2.3	19	81	14	54	2	6	9	81	0.95
11145187--11145237	20	2.6	19	81	6	57	1	7	9	80	0.98
11146320--11146357	13	2.9	13	96	0	67	23	7	42	26	1.81
11147215--11147253	20	1.9	21	89	5	62	10	17	15	56	1.66
11151386--11151429	10	4.4	10	77	11	54	25	9	20	45	1.80
11151370--11151430	19	3.1	21	72	13	58	24	6	19	49	1.72
11153159--11153206	20	2.4	20	86	10	71	33	6	0	60	1.22
11153464--11153563	30	3.3	31	80	4	114	30	20	17	33	1.95
11156334--11156383	24	2.1	23	85	3	64	0	20	0	80	0.72
11158672--11158778	53	2.0	53	90	1	169	18	10	4	66	1.39
11159190--11159238	3	16.3	3	91	0	80	63	0	2	34	1.06
11175589--11175621	17	2.0	17	88	5	50	45	27	6	21	1.75
11175860--11175954	45	2.1	45	82	0	109	33	12	18	34	1.89
11176970--11177083	3	37.3	3	70	25	55	32	0	5	62	1.18
11176973--11177082	39	2.8	40	78	13	120	32	0	5	61	1.19
11176970--11177084	49	2.3	49	80	12	137	32	0	5	62	1.17
11177126--11177165	21	1.9	21	84	0	53	15	5	7	72	1.24
11177539--11177604	31	2.1	31	97	0	123	28	16	22	31	1.96
11178022--11178061	4	9.8	4	83	5	53	20	0	5	75	0.99
11178085--11178167	10	7.4	11	75	17	73	15	4	1	78	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11178084--11178154	30	2.3	30	87	2	97	14	4	1	80	0.93
11178282--11178489	60	3.4	60	83	7	244	42	7	14	34	1.75
11178195--11178489	122	2.3	129	80	10	351	46	6	13	33	1.69
11194539--11194581	21	2.0	21	90	0	68	16	34	25	23	1.95
11194544--11194587	21	2.1	21	86	0	61	15	38	22	22	1.92
11196186--11196389	103	2.0	101	85	2	275	36	13	16	33	1.88
11196742--11196791	23	2.1	24	85	3	66	48	14	16	22	1.81
11199984--11200029	16	2.8	16	83	3	56	56	2	0	41	1.11
11201242--11201285	10	4.1	10	81	16	52	61	0	0	38	0.96
11201728--11201783	24	2.3	25	81	9	62	66	3	1	28	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117