genome.fa.s90.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  30  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7791136--7791160	13	1.9	13	100	0	50	60	0	0	40	0.97
7791151--7791229	26	3.1	26	74	15	74	40	1	2	55	1.21
7791161--7791243	26	3.2	25	74	16	71	40	2	2	54	1.27
7791433--7791490	8	6.8	8	75	13	53	32	1	3	62	1.22
7791418--7791490	26	2.8	26	76	13	69	28	4	2	64	1.26
7791417--7791490	17	4.3	17	68	10	51	28	4	2	64	1.25
7792578--7792652	30	2.5	30	80	8	89	44	12	0	44	1.41
7803157--7803210	29	1.9	27	85	7	72	35	14	14	35	1.88
7807139--7807183	23	2.0	23	90	0	72	44	31	2	22	1.65
7815487--7815513	14	1.9	14	100	0	54	88	3	7	0	0.61
7817409--7817458	23	2.2	23	85	0	64	40	2	24	34	1.66
7817762--7817802	18	2.3	18	87	4	57	36	0	2	60	1.10
7818662--7818703	21	2.0	22	85	4	59	40	2	2	54	1.26
7818662--7818703	22	2.0	21	85	4	57	40	2	2	54	1.26
7822231--7822273	21	2.0	21	100	0	86	34	9	18	37	1.83
7827153--7827194	13	3.2	13	83	13	50	52	2	0	45	1.13
7836996--7837024	6	4.8	6	100	0	58	51	0	48	0	1.00
7842098--7842156	21	2.7	23	84	5	68	47	0	1	50	1.11
7843036--7843080	13	3.6	13	85	5	58	22	0	15	62	1.33
7845740--7845780	16	2.5	17	84	4	57	46	17	2	34	1.61
7845816--7845859	14	3.1	14	84	12	54	50	22	2	25	1.61
7849562--7849640	21	3.9	19	70	14	50	45	3	0	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7849603--7849640	11	3.5	11	78	7	51	39	2	0	57	1.12
7849678--7849788	20	5.5	20	71	8	73	54	6	0	38	1.32
7849709--7849744	19	1.9	18	88	5	54	61	2	2	33	1.25
7849773--7849797	9	2.8	9	100	0	50	60	8	0	32	1.26
7849737--7849799	30	2.0	32	85	11	87	52	6	0	41	1.27
7849861--7849912	22	2.3	23	83	9	63	55	3	3	36	1.36
7850053--7850101	20	2.5	20	77	9	64	28	4	0	67	1.09
7850195--7850243	20	2.5	21	80	12	59	26	2	8	63	1.34
7850266--7850398	10	13.4	10	70	10	76	36	0	7	54	1.34
7850272--7850324	27	2.0	27	88	7	81	33	0	9	56	1.32
7850340--7850400	31	2.0	29	90	6	95	47	0	4	47	1.23
7850356--7850425	9	7.4	9	76	13	61	48	1	2	47	1.25
7850356--7850403	10	4.9	10	82	5	53	50	0	2	47	1.12
7851488--7851969	264	1.8	266	81	5	598	42	7	6	43	1.59
7852741--7852883	62	2.3	63	80	4	164	44	6	6	43	1.55
7852958--7853155	104	1.9	102	83	2	252	29	12	14	42	1.83
7853064--7853215	82	1.9	82	87	0	223	28	10	15	44	1.80
7853465--7853511	24	2.0	24	87	4	69	42	2	12	42	1.55
7861672--7861719	21	2.3	21	88	0	69	37	18	0	43	1.51
7863494--7863518	11	2.3	11	100	0	50	60	0	0	40	0.97
7863535--7863578	23	2.0	23	86	13	65	52	11	0	36	1.38
7863675--7863894	57	3.9	56	80	8	241	51	5	6	35	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7865694--7865773	40	2.0	40	85	0	106	38	6	13	41	1.70
7868327--7868361	11	3.3	10	92	8	52	0	14	0	85	0.59
7868995--7869071	27	2.9	27	77	11	77	53	1	1	44	1.17
7869030--7869091	3	20.3	3	80	9	72	64	0	1	33	1.03
7875224--7875263	21	1.9	21	84	0	53	40	27	15	17	1.89
7878772--7878923	37	4.3	35	71	9	119	55	5	15	23	1.62
7878932--7879129	48	4.0	49	71	17	176	53	7	13	25	1.66
7879076--7879444	36	10.7	35	72	15	157	51	6	12	29	1.64
7879246--7879303	28	2.1	29	83	6	75	60	8	5	25	1.47
7879317--7879448	71	1.9	69	81	12	162	50	3	15	30	1.61
7879318--7879448	35	3.8	33	78	16	124	51	3	15	29	1.61
7879328--7879463	70	1.9	71	81	11	163	47	6	14	31	1.70
7879776--7879805	2	15.0	2	100	0	60	50	0	0	50	1.00
7884798--7885000	110	1.8	111	88	3	311	52	6	4	35	1.48
7885222--7885254	12	2.9	12	91	8	52	6	45	6	42	1.53
7888361--7888404	23	1.9	23	86	9	63	54	18	4	22	1.61
7888360--7888517	84	1.9	84	81	1	190	47	21	8	22	1.77
7888412--7888706	85	3.5	85	72	12	187	44	22	10	23	1.83
7889031--7889222	56	3.4	56	75	5	163	33	17	11	37	1.85
7888939--7889182	112	2.2	112	78	4	242	34	20	12	32	1.89
7889263--7889298	18	2.0	18	88	0	54	47	19	11	22	1.80
7889554--7889610	19	3.0	19	70	10	53	49	22	10	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7891217--7891247	2	15.5	2	100	0	62	48	0	51	0	1.00
7915477--7915531	29	1.9	28	85	3	74	54	14	9	21	1.68
7918072--7918125	16	3.6	15	77	20	51	37	0	0	62	0.95
7918459--7918490	15	2.1	15	94	0	55	15	0	0	84	0.63
7919288--7919319	12	2.8	12	90	9	50	43	0	0	56	0.99
7924020--7924059	20	2.0	20	100	0	80	45	15	15	25	1.84
7924522--7924549	7	4.0	7	100	0	56	57	14	28	0	1.38
7925633--7925675	14	3.1	14	77	12	52	74	4	20	0	1.00
7931823--7931864	21	2.0	21	85	4	57	33	4	26	35	1.77
7933601--7933660	21	3.0	20	65	18	52	40	5	6	48	1.51
7933603--7933668	18	3.2	21	65	16	57	37	3	6	53	1.41
7933659--7933722	12	5.4	12	69	10	51	31	4	1	62	1.25
7933790--7933859	23	3.0	22	82	14	70	75	0	2	21	0.93
7933770--7933859	10	9.2	10	72	21	50	74	2	3	20	1.07
7933758--7933875	21	5.9	18	72	21	69	72	2	5	18	1.16
7934797--7934874	3	27.3	3	81	12	58	58	1	0	39	1.06
7935412--7935531	59	2.0	60	90	1	188	50	9	14	25	1.72
7937098--7937142	20	2.3	21	74	14	51	46	4	0	48	1.22
7939544--7939601	16	3.6	16	95	0	98	8	24	29	37	1.85
7939574--7939639	26	2.5	26	82	4	71	16	27	21	34	1.95
7939671--7939740	3	24.0	3	85	11	101	31	1	1	65	1.10
7940080--7940134	20	2.8	18	78	13	56	23	5	30	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7940217--7940282	32	2.1	32	82	2	80	28	4	19	46	1.69
7940577--7940616	19	2.2	18	86	4	53	12	2	5	80	0.98
7940745--7940795	25	2.0	25	82	14	61	66	7	1	23	1.28
7951825--7952681	119	7.2	119	80	4	802	19	20	14	45	1.85
7951827--7952617	357	2.2	356	82	1	949	19	20	14	45	1.85
7952886--7952977	3	31.7	3	91	8	147	30	1	0	68	0.97
7954361--7954444	42	2.0	42	84	6	109	40	4	5	48	1.48
7961150--7961180	16	1.9	16	93	0	53	67	0	0	32	0.91
7963590--7963622	10	3.3	10	84	16	50	27	0	3	69	1.03
7969804--7969864	18	3.3	18	69	13	61	13	16	4	65	1.42
7969805--7969885	37	2.2	37	97	0	153	13	16	4	65	1.43
7975656--7975690	3	11.7	3	100	0	70	65	0	0	34	0.93
7976944--7976976	12	2.5	14	90	9	52	36	3	0	60	1.12
7978886--7978926	20	2.0	20	85	0	55	46	2	4	46	1.37
7982137--7982193	22	2.6	22	78	13	64	50	0	0	49	1.00
7984880--7984905	2	13.0	2	100	0	52	50	0	0	50	1.00
7984951--7984991	21	2.0	21	95	0	73	46	2	12	39	1.54
7990393--7990438	20	2.3	20	84	0	65	50	0	2	47	1.13
7990452--7990507	8	6.9	8	78	15	53	73	1	0	25	0.93
7990430--7990507	39	2.0	40	87	2	113	70	1	2	25	1.07
7990448--7990500	23	2.3	23	80	6	63	73	1	0	24	0.93
7991739--7991790	21	2.5	21	90	6	79	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7991739--7991790	22	2.5	22	93	6	90	50	0	0	50	1.00
7995711--7995779	31	2.3	30	79	2	75	43	7	1	47	1.39
7997135--7997180	3	15.3	3	95	0	83	67	2	0	30	1.03
7999801--7999828	3	9.3	3	100	0	56	32	0	0	67	0.91
8002005--8002038	16	2.1	16	88	0	50	23	23	23	29	1.99
8003059--8003095	18	2.1	18	89	0	56	37	18	18	24	1.94
8004813--8004856	23	1.9	23	100	0	88	25	11	36	27	1.90
8005845--8005895	15	3.2	15	77	22	59	29	0	1	68	1.00
8013793--8013938	52	2.8	51	82	4	168	28	21	6	43	1.77
8014260--8014340	31	2.6	31	96	0	144	27	20	18	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117