genome.fa.s90.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  56  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12606139--12606189	21	2.4	21	90	0	75	43	0	0	56	0.99
12606369--12606411	19	2.3	19	79	0	50	20	11	0	67	1.22
12607173--12607238	33	2.0	33	81	0	78	33	18	7	40	1.79
12619964--12619998	2	17.5	2	87	0	52	57	0	0	42	0.99
12631106--12631130	12	2.1	12	100	0	50	76	0	0	24	0.80
12637109--12637168	17	3.4	17	74	4	57	40	1	1	56	1.19
12637166--12637231	34	1.9	34	82	11	82	63	6	0	30	1.18
12638207--12638288	21	3.9	21	85	1	101	30	17	18	34	1.94
12640625--12640665	19	2.2	19	90	0	64	80	4	0	14	0.87
12640853--12640913	20	3.2	20	63	13	56	57	18	6	18	1.61
12640846--12640921	37	2.1	37	100	0	152	55	21	5	18	1.62
12640846--12640945	37	2.7	37	90	4	139	53	20	6	21	1.67
12642777--12642805	12	2.4	12	100	0	58	79	6	0	13	0.93
12642735--12642811	33	2.3	33	80	12	86	75	3	2	18	1.07
12643095--12643119	13	1.9	13	100	0	50	64	20	0	16	1.30
12643600--12643798	3	69.3	3	72	17	140	61	5	1	32	1.24
12646217--12646353	68	2.0	68	97	0	256	35	8	20	35	1.84
12653591--12653981	196	2.0	196	94	1	685	43	9	15	31	1.79
12655505--12655719	117	1.8	117	88	4	326	31	11	9	47	1.71
12664089--12664284	70	2.8	69	78	15	197	40	6	6	46	1.55
12664113--12664435	72	4.6	71	76	10	252	41	9	5	42	1.62
12665587--12665616	13	2.4	12	89	10	51	90	6	0	3	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12667342--12667380	2	19.5	2	100	0	78	51	0	48	0	1.00
12672174--12672211	20	1.9	20	94	0	67	13	0	28	57	1.36
12672169--12672220	20	2.4	22	78	15	63	15	0	28	55	1.40
12672906--12672951	20	2.3	20	96	0	83	58	8	2	30	1.40
12673023--12673085	18	3.4	18	70	12	56	49	14	11	25	1.76
12673022--12673082	20	3.2	20	77	13	74	52	14	9	22	1.71
12673070--12673165	18	5.4	18	65	6	61	43	8	16	31	1.78
12673070--12673217	36	4.3	35	73	9	115	41	7	18	32	1.79
12673286--12673350	8	7.8	8	73	10	58	52	6	12	29	1.63
12673286--12673459	51	3.4	51	73	1	152	48	8	13	29	1.71
12673285--12673457	17	10.2	17	79	2	114	47	8	13	30	1.73
12673023--12673462	34	12.7	34	72	5	139	44	8	16	30	1.78
12674157--12674189	17	1.9	17	93	0	57	0	18	6	75	1.00
12674187--12674234	16	2.9	16	84	12	62	12	16	0	70	1.16
12677864--12678072	109	1.9	108	82	6	262	35	10	4	49	1.58
12677871--12678072	54	3.7	54	77	12	175	35	10	4	49	1.57
12678132--12678156	4	6.2	4	100	0	50	76	0	0	24	0.80
12681714--12681779	33	2.0	34	87	3	98	37	6	13	42	1.69
12683433--12683479	23	2.0	23	91	0	76	21	8	21	48	1.76
12696961--12696997	16	2.4	16	95	4	67	29	5	32	32	1.80
12698190--12698254	32	2.1	31	91	2	103	50	1	1	46	1.20
12700169--12700199	16	2.0	15	93	6	53	6	19	9	64	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12703544--12703572	6	4.8	6	100	0	58	17	0	13	68	1.20
12703544--12703578	18	1.9	18	88	0	52	20	2	11	65	1.37
12707967--12707996	13	2.3	13	100	0	60	16	46	13	23	1.82
12708216--12708464	80	3.1	80	91	0	374	20	7	26	44	1.78
12714337--12714861	49	10.7	49	78	8	509	39	13	12	34	1.82
12714483--12714563	40	2.0	40	92	0	135	43	13	12	30	1.81
12714435--12714612	89	2.0	89	91	0	284	39	14	13	32	1.84
12714523--12714863	99	3.4	98	83	6	393	39	13	12	34	1.82
12714523--12714842	148	2.1	148	84	5	412	39	13	12	34	1.83
12714853--12714913	25	2.4	25	81	8	70	37	6	14	40	1.72
12715528--12715570	14	3.1	14	93	6	70	18	30	0	51	1.47
12716235--12716277	20	2.2	20	91	0	68	2	11	0	86	0.67
12716217--12716291	32	2.3	33	84	9	100	4	13	2	80	0.97
12727895--12727985	7	12.5	8	72	15	56	9	1	38	50	1.43
12727906--12728006	21	4.8	21	80	3	96	10	0	36	51	1.44
12727907--12728004	7	13.7	7	70	8	54	10	1	35	53	1.42
12728069--12728102	16	2.1	16	89	10	52	20	5	29	44	1.75
12730501--12730595	44	2.2	44	81	5	113	37	11	14	35	1.83
12730521--12730617	44	2.2	44	79	3	115	43	11	11	34	1.76
12730629--12731297	43	15.5	43	70	10	248	44	16	9	29	1.80
12731151--12731309	44	3.7	43	83	4	185	45	17	6	30	1.75
12732462--12732516	14	3.9	15	73	20	55	12	18	0	69	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12732476--12732546	21	3.4	19	74	18	61	14	15	1	69	1.27
12736708--12736733	3	8.7	3	100	0	52	69	0	0	30	0.89
12737948--12737981	18	1.9	17	88	5	50	47	11	8	32	1.71
12739757--12739805	25	2.0	24	96	4	89	38	0	4	57	1.18
12740289--12740533	88	2.8	91	80	8	226	37	4	8	49	1.54
12740775--12740828	15	3.5	15	82	5	54	46	1	5	46	1.37
12741165--12741462	91	3.3	90	77	13	265	42	6	8	42	1.61
12743068--12743098	14	2.2	14	100	0	62	29	25	12	32	1.93
12747176--12747206	6	5.0	6	96	4	53	80	0	0	19	0.71
12747449--12747526	23	3.4	23	80	7	70	57	2	0	39	1.12
12752996--12753029	15	2.3	15	89	0	50	20	20	14	44	1.87
12769386--12769424	18	2.2	18	86	13	55	41	2	0	56	1.13
12769728--12770353	309	2.0	309	97	0	1189	43	9	14	32	1.77
12770951--12771030	3	26.7	3	100	0	160	32	0	0	67	0.91
12771665--12771730	26	2.6	25	77	15	71	46	1	3	48	1.26
12771699--12771738	15	2.6	15	80	4	53	50	0	0	50	1.00
12771665--12771735	25	2.8	25	81	12	74	46	1	2	49	1.25
12771980--12772020	22	1.9	21	85	5	55	68	7	2	21	1.26
12771992--12772043	21	2.4	22	80	3	61	55	15	1	26	1.50
12776455--12776505	22	2.4	22	80	3	59	54	11	1	31	1.47
12782495--12782524	13	2.3	13	94	0	51	86	3	6	3	0.77
12785488--12785531	22	2.0	22	95	0	79	47	0	6	45	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12787054--12787082	3	9.7	3	100	0	58	68	0	0	31	0.89
12788778--12788839	28	2.2	28	85	0	79	40	14	11	33	1.82
12789878--12789921	23	1.9	23	85	0	61	40	0	6	52	1.28
12790337--12790367	16	1.9	16	100	0	62	35	12	0	51	1.40
12793267--12793337	37	1.9	37	88	8	110	76	5	0	18	0.98
12793263--12793374	12	9.2	12	73	18	72	70	4	1	23	1.15
12793847--12793904	26	2.2	25	81	6	71	63	12	15	8	1.50
12795322--12795412	38	2.4	38	85	5	121	52	24	6	16	1.67
12795351--12795410	12	4.8	12	77	6	57	56	25	3	15	1.54
12795351--12795412	13	4.9	13	74	5	56	56	25	3	14	1.53
12795351--12795410	25	2.4	25	88	0	84	56	25	3	15	1.54
12795448--12795487	12	3.2	12	82	6	53	52	20	5	22	1.65
12795458--12795497	13	3.2	13	82	7	55	47	27	5	20	1.70
12795448--12795497	25	2.0	25	92	0	82	50	22	6	22	1.70
12795741--12795782	17	2.6	16	85	10	59	73	0	4	21	1.01
12797346--12797408	16	3.6	17	79	14	58	17	6	1	74	1.10
12799077--12799109	7	4.7	7	100	0	66	12	0	0	87	0.53
12799083--12799132	22	2.3	22	82	6	57	10	6	2	82	0.92
12800065--12800122	25	2.4	24	83	11	73	74	5	0	20	1.01
12802080--12802128	12	4.0	12	81	5	53	57	22	2	18	1.51
12802081--12802141	25	2.4	25	83	0	77	55	24	4	14	1.59
12802166--12802199	14	2.4	14	90	0	50	52	23	2	20	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12804042--12804091	18	2.6	19	84	12	59	18	4	0	78	0.91
12804030--12804107	14	5.3	15	79	16	83	21	3	0	74	0.98
12804073--12804122	24	2.1	24	85	7	66	26	6	0	68	1.13
12815693--12816001	66	4.7	66	73	4	210	21	20	12	44	1.85
12817334--12817410	18	4.4	17	75	23	63	19	5	2	72	1.15
12817363--12817417	17	3.2	17	78	17	60	23	3	1	70	1.12
12817330--12817424	16	5.5	17	71	21	56	21	4	2	72	1.12
12828257--12828325	35	2.0	35	94	0	120	55	2	8	33	1.46
12828258--12828333	35	2.1	35	87	2	107	59	2	7	30	1.40
12829387--12829444	16	3.3	18	76	11	57	81	0	13	5	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117