genome.fa.s90.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  12  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3461356--3461402	24	2.0	24	91	0	76	10	2	59	27	1.42
3462794--3462844	23	2.3	22	83	10	68	56	0	7	35	1.28
3466655--3466771	60	2.0	60	94	0	207	33	15	24	26	1.95
3476021--3476045	3	8.3	3	100	0	50	32	0	68	0	0.90
3477424--3477463	20	2.0	20	86	13	57	55	0	0	45	0.99
3477430--3477474	20	2.3	20	80	3	56	62	0	0	37	0.96
3477466--3477525	30	2.0	30	83	6	77	43	0	1	55	1.10
3480922--3481008	43	2.0	43	90	0	138	37	12	19	29	1.89
3481634--3481663	13	2.3	13	94	0	51	56	20	0	23	1.42
3482114--3482164	25	2.0	26	84	3	68	35	1	0	62	1.06
3482694--3482752	3	20.3	3	93	6	104	69	0	0	30	0.89
3494724--3494760	12	3.0	13	88	7	51	48	0	0	51	1.00
3502236--3502288	25	2.1	25	85	0	70	50	3	1	43	1.30
3508453--3508631	98	1.8	97	90	1	286	25	17	22	34	1.96
3511539--3511564	9	2.9	9	100	0	52	11	11	30	46	1.76
3523793--3523825	2	16.5	2	93	0	57	51	0	48	0	1.00
3525944--3525977	14	2.3	15	90	5	52	50	0	0	50	1.00
3527187--3527237	26	2.0	26	84	7	68	52	1	1	43	1.23
3530677--3530741	6	11.0	6	75	11	55	35	0	0	64	0.94
3530671--3530742	18	4.1	18	78	8	85	34	0	0	65	0.93
3530667--3530737	34	2.0	36	91	5	119	36	0	0	63	0.95
3530674--3530736	16	3.8	16	79	10	72	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3534850--3535170	57	5.5	57	74	12	175	32	9	7	51	1.61
3534850--3535171	59	5.5	59	81	3	283	31	9	7	51	1.61
3535208--3535252	22	2.2	20	84	8	54	51	4	4	40	1.42
3535246--3535305	4	15.0	4	75	6	59	71	1	5	21	1.14
3535249--3535302	15	3.6	15	80	14	58	72	1	5	20	1.14
3535246--3535305	28	2.1	28	87	6	86	71	1	5	21	1.14
3545895--3546162	132	2.0	132	94	0	464	25	12	19	42	1.86
3552763--3552791	2	14.5	2	100	0	58	48	0	0	51	1.00
3563273--3563315	2	21.5	2	95	0	68	55	0	0	44	0.99
3564900--3564955	28	2.0	27	83	10	69	58	0	5	35	1.21
3571496--3571543	21	2.3	20	75	10	53	45	0	4	50	1.21
3574574--3574700	41	3.4	37	80	9	148	46	8	1	43	1.44
3590154--3590199	24	2.0	24	82	4	58	34	15	13	36	1.86
3590309--3590338	15	1.9	16	93	6	53	6	10	6	76	1.15
3595415--3595478	17	3.7	17	77	6	58	65	6	3	25	1.31
3604526--3604564	20	2.0	20	84	0	51	33	2	2	61	1.23
3607232--3607291	24	2.5	24	78	5	68	11	38	3	46	1.57
3609824--3609880	15	3.5	15	70	21	51	42	17	14	26	1.87
3609816--3609885	35	2.0	35	100	0	140	42	17	14	25	1.86
3612850--3612944	28	3.3	28	68	25	81	35	12	4	47	1.61
3612849--3612965	58	2.0	58	94	0	207	38	11	4	45	1.61
3630571--3630608	14	2.7	14	76	15	51	31	7	39	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3634433--3634488	16	3.6	15	77	15	60	85	7	0	7	0.73
3634570--3634620	19	2.7	19	83	16	63	82	0	3	13	0.81
3634569--3634620	27	2.0	25	88	7	77	80	0	3	15	0.85
3636282--3636309	6	4.7	6	100	0	56	71	14	0	14	1.15
3637441--3637483	2	22.5	2	82	17	56	48	2	0	48	1.14
3637441--3637482	17	2.3	19	84	12	61	47	2	0	50	1.14
3638623--3638653	16	2.0	16	93	6	55	32	3	0	64	1.09
3638974--3639025	21	2.5	20	79	11	52	48	1	0	50	1.12
3640064--3640091	12	2.3	12	100	0	56	78	0	0	21	0.75
3640669--3640715	22	2.1	22	96	0	85	61	2	8	27	1.36
3641057--3641103	24	2.0	24	82	0	58	38	4	4	53	1.40
3641240--3641290	9	5.7	9	79	9	59	58	3	1	35	1.28
3641239--3641280	19	2.2	19	86	0	57	61	2	2	33	1.21
3641267--3641326	21	2.6	24	82	12	72	68	6	0	25	1.14
3641267--3641326	23	2.6	22	82	12	68	68	6	0	25	1.14
3642414--3642469	10	5.7	10	75	12	62	33	1	3	60	1.24
3642413--3642468	29	1.9	29	85	7	78	33	1	5	58	1.31
3642418--3642495	39	2.0	39	85	9	106	34	1	6	57	1.32
3642414--3642487	9	7.8	9	77	15	60	32	1	5	60	1.27
3647984--3648145	81	2.0	81	90	0	252	32	17	26	22	1.97
3648179--3648360	36	5.1	36	78	9	106	28	17	32	21	1.96
3648297--3648349	18	2.9	18	72	10	54	30	16	32	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3648202--3648382	36	5.0	36	77	10	145	28	18	31	22	1.97
3648200--3648382	72	2.5	72	77	10	194	27	18	31	22	1.97
3648297--3648433	72	1.9	72	80	3	159	28	21	31	18	1.97
3658586--3658622	2	18.5	2	94	0	65	45	0	2	51	1.15
3659612--3659663	26	2.0	26	81	7	61	11	23	3	61	1.46
3662924--3662956	15	2.2	15	89	10	50	24	0	0	75	0.80
3665091--3665131	21	1.9	22	90	5	66	36	4	0	58	1.20
3665490--3665565	32	2.4	31	84	6	91	35	7	11	44	1.70
3681783--3681833	17	3.1	16	80	8	57	47	0	0	52	1.00
3692437--3692470	14	2.4	14	90	5	50	26	5	23	44	1.76
3699609--3699705	36	2.8	35	75	16	94	37	8	13	41	1.74
3699620--3699715	17	5.5	17	71	10	61	37	6	13	42	1.70
3699620--3699717	34	2.8	34	75	14	94	37	7	13	41	1.72
3699893--3700162	109	2.5	108	84	2	346	37	15	8	38	1.78
3700148--3700200	28	1.9	28	88	3	81	45	20	5	28	1.74
3700674--3700819	79	1.8	79	85	0	202	35	26	2	35	1.71
3701922--3701973	21	2.5	22	78	15	56	38	1	5	53	1.36
3709500--3709528	2	14.5	2	100	0	58	51	0	0	48	1.00
3711787--3711860	28	2.7	26	83	8	76	43	0	1	55	1.08
3711964--3712007	22	2.0	22	86	0	61	54	4	0	40	1.21
3713732--3713766	18	2.0	18	88	5	54	77	0	0	22	0.78
3716156--3716212	27	2.1	28	83	6	73	45	5	12	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3716296--3716389	48	2.0	48	81	8	111	55	10	9	24	1.64
3716374--3716401	13	2.2	13	100	0	56	85	0	0	14	0.59
3718251--3718295	18	2.5	18	100	0	90	51	4	0	44	1.21
3725250--3725310	14	4.1	14	76	12	59	49	1	0	49	1.10
3725241--3725296	18	2.9	18	82	10	67	51	0	0	48	1.00
3725381--3725417	13	3.0	13	80	11	51	35	5	0	59	1.20
3725402--3725442	21	2.0	21	85	4	57	41	7	0	51	1.30
3727446--3727496	25	2.0	25	100	0	102	27	15	11	45	1.81
3729412--3729452	14	2.9	14	88	0	64	26	2	0	70	0.99
3733375--3733420	23	2.0	23	86	4	65	56	8	10	23	1.61
3743884--3743919	15	2.4	15	90	0	54	47	22	2	27	1.65
3752379--3752427	5	10.4	5	82	12	52	18	2	0	79	0.83
3752378--3752473	4	23.8	4	74	17	51	26	3	1	69	1.09
3752378--3752556	21	8.3	21	69	22	88	30	3	1	64	1.20
3752378--3752572	10	19.4	10	69	20	81	30	4	1	64	1.21
3752445--3752567	48	2.6	47	81	15	148	34	4	1	59	1.26
3752445--3752567	46	2.6	48	82	11	141	34	4	1	59	1.26
3752825--3752873	11	4.5	11	77	10	55	30	2	8	59	1.38
3753363--3753531	63	2.8	58	77	16	171	49	4	9	36	1.56
3753467--3753503	18	2.1	17	95	5	65	48	0	0	51	1.00
3756716--3756747	15	2.1	15	94	0	55	28	25	0	46	1.53
3764080--3764367	142	2.0	142	97	0	540	27	12	16	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3765070--3765270	42	4.8	42	80	6	205	24	14	22	37	1.92
3765070--3765253	84	2.2	84	90	2	282	24	13	23	38	1.91
3765070--3765297	84	2.7	84	83	4	221	25	14	21	38	1.92
3765549--3765662	4	27.5	4	72	15	65	27	2	2	67	1.17
3765605--3765657	20	2.7	20	88	11	90	35	0	0	64	0.94
3765620--3765754	24	5.8	24	69	19	97	34	3	1	60	1.24
3765623--3765682	28	2.1	28	81	6	68	35	1	1	61	1.16
3765629--3765759	48	2.7	49	81	12	162	33	4	1	60	1.26
3766467--3766498	6	5.3	6	100	0	64	15	0	0	84	0.63
3766528--3766569	13	3.2	13	83	16	59	21	0	0	78	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117