genome.fa.s90.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  107  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19552389--19552440	26	2.0	26	100	0	104	26	26	19	26	1.99
19553280--19553332	26	2.0	26	92	0	88	28	24	18	28	1.98
19551517--19556109	899	5.1	890	85	5	5844	25	24	24	25	2.00
19555038--19555089	26	2.0	26	96	3	97	26	25	21	26	1.99
19555951--19556001	26	2.0	26	92	0	84	29	23	17	29	1.97
19560612--19560668	20	3.1	18	77	20	55	75	0	19	5	0.99
19560641--19560699	17	3.6	17	79	9	68	74	0	20	5	1.00
19561940--19562275	41	8.1	41	89	2	487	24	15	23	36	1.93
19562282--19562332	1	51.0	1	80	0	57	90	9	0	0	0.46
19562282--19562332	21	2.5	20	84	6	75	90	9	0	0	0.46
19562282--19562332	23	2.3	22	86	6	75	90	9	0	0	0.46
19562546--19562687	21	6.6	20	67	25	67	28	2	2	66	1.17
19562541--19562597	4	14.8	4	75	17	50	26	1	1	70	1.07
19562620--19562675	17	3.1	18	80	17	55	32	1	1	64	1.14
19562661--19562690	9	3.3	9	90	0	51	23	0	0	76	0.78
19563277--19563324	19	2.5	19	72	3	51	37	18	20	22	1.94
19563751--19563790	14	2.5	17	73	23	50	15	10	0	75	1.05
19563737--19563785	14	3.4	14	80	5	53	14	8	2	75	1.12
19563793--19564074	113	2.5	114	85	7	398	45	8	10	35	1.69
19563793--19564074	57	5.0	56	84	9	360	45	8	10	35	1.69
19564657--19564709	26	2.0	26	92	0	88	24	18	28	28	1.98
19566462--19566514	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19569129--19569179	26	2.0	26	96	0	93	27	17	25	29	1.98
19564579--19571111	897	7.3	895	87	3	8638	25	24	25	25	2.00
19570026--19570077	26	2.0	27	88	3	79	30	17	23	28	1.97
19573282--19573334	26	2.0	26	96	0	97	26	18	26	28	1.98
19575745--19575797	26	2.0	26	92	0	88	30	20	24	24	1.99
19576785--19577500	369	1.9	371	88	3	1077	24	20	24	31	1.98
19577872--19577924	26	2.0	26	96	0	97	32	20	22	24	1.98
19578764--19578816	26	2.0	26	92	0	88	26	16	28	28	1.97
19577151--19581458	903	4.8	898	86	3	5725	25	24	24	25	2.00
19579667--19579719	26	2.0	26	96	0	97	28	20	24	26	1.99
19582106--19582176	25	2.8	26	93	4	126	26	19	25	28	1.99
19582987--19583039	26	2.0	26	96	0	97	26	20	24	28	1.99
19584773--19584825	26	2.0	26	96	0	97	26	20	24	28	1.99
19582673--19601147	892	20.8	891	83	5	21253	25	24	24	25	2.00
19586542--19586594	26	2.0	26	96	0	97	28	16	26	28	1.97
19588323--19588375	26	2.0	26	96	0	97	26	18	26	28	1.98
19585664--19593463	898	8.7	900	86	4	10219	25	24	25	25	2.00
19588744--19588800	26	2.2	26	83	0	69	26	7	7	59	1.49
19589221--19589273	26	2.0	26	100	0	106	26	20	26	26	1.99
19592802--19592854	26	2.0	26	92	0	88	28	20	24	26	1.99
19593643--19593695	26	2.0	26	92	0	88	26	16	26	30	1.97
19595428--19595480	26	2.0	26	96	0	97	28	20	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19593458--19601147	895	8.6	892	86	3	10068	25	24	24	25	2.00
19597209--19597261	26	2.0	26	92	0	88	24	18	28	28	1.98
19599877--19599928	25	2.0	26	92	3	88	28	21	23	26	1.99
19600763--19600818	25	2.3	25	90	3	87	28	19	23	28	1.98
19601521--19601597	29	2.8	26	87	12	118	25	20	27	25	1.99
19602453--19602505	26	2.0	26	92	0	88	26	16	26	30	1.97
19603334--19603386	26	2.0	26	96	0	97	26	18	26	28	1.98
19603651--19608172	898	5.1	898	85	3	5920	25	23	24	25	2.00
19605422--19605474	26	2.0	26	88	0	79	28	20	24	26	1.99
19607200--19607252	26	2.0	26	96	0	97	26	22	26	24	2.00
19608096--19608148	26	2.0	26	96	0	97	26	22	24	26	2.00
19613405--19613430	4	6.5	4	100	0	52	0	26	73	0	0.84
19609873--19626012	891	18.2	888	84	5	19422	25	24	24	25	2.00
19617621--19617673	26	2.0	26	96	0	97	28	20	24	26	1.99
19620258--19620308	26	2.0	26	100	0	102	27	19	27	25	1.99
19618508--19626012	897	8.4	898	86	3	9844	25	24	24	25	2.00
19621145--19621195	26	2.0	26	96	0	93	27	13	27	31	1.94
19623822--19623874	26	2.0	26	96	0	97	28	20	24	26	1.99
19625614--19625666	26	2.0	26	96	0	97	26	18	26	28	1.98
19625853--19626188	176	1.9	176	89	1	521	21	21	29	27	1.99
19626692--19626744	26	2.0	26	92	0	88	28	18	24	28	1.98
19627592--19627644	26	2.0	26	92	7	90	32	20	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19626035--19630518	902	5.0	901	89	1	6478	25	24	24	26	2.00
19630302--19630354	26	2.0	26	92	0	88	26	20	24	28	1.99
19631239--19637891	858	7.6	854	82	7	7211	25	23	24	26	2.00
19634394--19634448	26	2.1	26	93	0	92	29	20	25	25	1.99
19636145--19636198	26	2.1	26	96	0	99	29	25	24	20	1.99
19637039--19637089	26	2.0	26	92	0	84	29	13	27	29	1.94
19635284--19637891	895	2.9	893	87	1	3749	25	24	25	25	2.00
19640513--19640565	26	2.0	26	92	0	88	28	18	24	28	1.98
19640646--19640674	12	2.4	12	100	0	58	6	44	24	24	1.77
19637897--19645966	889	9.0	894	86	3	10761	25	24	24	25	2.00
19642298--19642350	26	2.0	26	88	0	79	28	16	26	28	1.97
19645870--19645922	26	2.0	26	96	0	97	26	18	24	30	1.98
19646626--19646678	26	2.0	26	96	0	97	26	22	24	26	2.00
19645217--19646716	756	2.0	756	90	2	2377	26	24	23	26	2.00
19645977--19648386	903	2.7	896	88	2	3556	25	24	24	25	2.00
19650028--19650080	26	2.0	26	96	0	97	28	20	24	26	1.99
19648439--19650949	880	2.8	877	87	5	3381	25	23	24	26	2.00
19651641--19651693	26	2.0	26	88	0	79	26	16	24	32	1.97
19652530--19652580	26	2.0	26	96	0	93	25	15	27	31	1.96
19650903--19653762	890	3.2	885	84	4	3686	24	23	25	25	2.00
19655276--19655331	26	2.2	26	90	6	87	25	21	26	26	1.99
19656972--19657024	26	2.0	26	96	0	97	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19657859--19657910	26	2.0	26	88	0	77	25	17	23	34	1.96
19659406--19659457	26	2.0	26	92	0	86	28	17	26	26	1.97
19661176--19661571	159	2.5	159	88	1	580	21	29	29	19	1.98
19663982--19664034	26	2.0	26	88	0	79	28	20	24	26	1.99
19665089--19665118	4	7.5	4	92	0	51	0	26	70	3	1.03
19661352--19665794	882	5.0	873	83	5	5205	25	24	24	25	2.00
19665768--19665820	26	2.0	26	96	0	97	26	20	24	28	1.99
19666466--19666518	26	2.0	26	100	0	106	26	20	26	26	1.99
19665187--19667280	698	3.0	696	90	2	3185	25	23	23	27	2.00
19667160--19667211	26	2.0	26	92	0	86	28	21	25	25	1.99
19666588--19669012	905	2.7	896	84	6	3116	25	23	24	26	2.00
19668963--19669012	26	1.9	26	95	0	91	30	20	24	26	1.98
19669977--19670029	26	2.0	26	100	0	106	26	20	26	26	1.99
19670843--19670895	26	2.0	26	100	0	106	26	20	26	26	1.99
19672339--19672391	26	2.0	26	96	0	97	28	20	24	26	1.99
19672135--19672550	185	2.3	185	85	2	550	21	27	28	22	1.99
19673826--19673878	26	2.0	26	96	0	97	28	20	26	24	1.99
19672796--19673914	583	1.9	583	88	2	1678	27	23	23	25	2.00
19674717--19674769	26	2.0	26	96	0	97	24	20	28	26	1.99
19673378--19677451	900	4.6	898	85	3	5227	26	24	24	25	2.00
19675611--19675661	26	2.0	26	92	0	84	29	21	23	25	1.99
19676509--19676561	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19677399--19677477	26	3.0	26	90	0	131	26	16	26	30	1.97
19678176--19678228	26	2.0	26	96	0	97	26	22	24	26	2.00
19679023--19679075	26	2.0	26	100	0	106	26	20	26	26	1.99
19677632--19688608	880	12.5	872	82	8	10599	25	23	24	25	2.00
19680912--19688608	881	8.7	884	87	4	9823	25	23	24	25	2.00
19683392--19683447	26	2.2	26	96	0	103	26	17	25	30	1.97
19684273--19684325	26	2.0	26	88	0	79	28	18	28	24	1.98
19686040--19686092	26	2.0	26	100	0	106	26	20	26	26	1.99
19686932--19686984	26	2.0	26	85	0	70	30	16	20	32	1.95
19685171--19688608	894	3.8	893	88	1	5141	25	23	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117