genome.fa.s90.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  97  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18237305--18237376	26	2.8	26	97	0	135	29	19	25	26	1.99
18239223--18239275	27	2.0	27	85	7	72	30	15	26	28	1.96
18240121--18240172	26	2.0	25	88	3	77	26	19	23	30	1.98
18242833--18242885	26	2.0	26	92	0	88	26	20	26	26	1.99
18238863--18250213	899	12.7	899	84	4	14251	25	24	24	25	2.00
18243732--18243784	26	2.0	26	81	0	61	32	16	20	30	1.95
18245489--18245541	26	2.0	26	92	0	88	24	22	28	24	2.00
18247234--18247286	26	2.0	26	88	0	79	30	22	22	24	1.99
18248135--18248187	26	2.0	26	96	0	97	22	18	26	32	1.97
18246371--18250213	891	4.3	894	84	3	4918	24	24	25	25	2.00
18249930--18249979	26	1.9	26	100	0	100	28	20	30	22	1.98
18250017--18250344	171	1.9	170	85	0	449	19	29	33	17	1.95
18250994--18251046	26	2.0	26	96	0	97	26	22	26	24	2.00
18251895--18251947	26	2.0	26	85	0	70	28	18	26	26	1.98
18250187--18253042	898	3.2	895	87	2	4032	24	24	25	24	2.00
18252793--18252845	26	2.0	26	96	0	97	26	18	26	28	1.98
18253196--18253225	4	7.5	4	92	0	51	3	26	70	0	1.03
18253873--18253925	26	2.0	26	96	0	97	26	18	26	28	1.98
18253058--18262396	900	10.2	899	78	7	8885	25	24	25	24	2.00
18255675--18255727	26	2.0	26	92	0	88	26	20	24	28	1.99
18256567--18256619	26	2.0	26	96	0	97	28	20	24	26	1.99
18257470--18257519	26	1.9	26	91	0	82	30	22	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18258507--18258559	26	2.0	26	92	0	88	26	20	26	26	1.99
18259406--18259458	26	2.0	26	88	0	79	26	18	28	26	1.98
18260306--18260358	26	2.0	26	92	0	88	26	20	24	28	1.99
18261209--18261261	26	2.0	26	96	0	97	28	20	24	26	1.99
18262199--18262573	171	2.2	166	83	4	484	21	28	33	16	1.95
18265865--18265914	26	1.9	26	83	0	64	32	22	24	22	1.98
18266765--18266817	26	2.0	26	96	0	97	26	18	26	28	1.98
18253058--18257707	899	5.2	898	84	3	5474	25	24	24	25	2.00
18267528--18267580	26	2.0	26	96	0	97	26	18	26	28	1.98
18267881--18267932	26	2.0	26	88	0	77	28	17	23	30	1.97
18268061--18268113	26	2.0	26	96	0	97	28	20	24	26	1.99
18268961--18269013	26	2.0	26	92	0	88	26	20	24	28	1.99
18269861--18269913	26	2.0	26	96	0	97	28	20	24	26	1.99
18270751--18270803	26	2.0	26	96	0	97	28	20	24	26	1.99
18267975--18275008	900	7.9	893	85	5	8815	25	23	25	25	2.00
18271643--18271693	26	2.0	26	96	0	93	29	15	25	29	1.96
18273381--18273433	26	2.0	26	92	0	88	30	20	22	26	1.98
18274277--18274329	26	2.0	26	88	0	79	26	22	24	26	2.00
18272496--18275008	897	2.8	895	87	3	3519	25	23	25	25	2.00
18275625--18275676	26	2.0	26	100	0	104	26	19	26	26	1.99
18276481--18276531	26	2.0	26	100	0	102	31	15	23	29	1.95
18278786--18278836	26	2.0	26	96	0	93	27	17	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18279630--18279682	26	2.0	26	85	0	70	30	18	24	26	1.98
18280525--18280577	26	2.0	26	92	0	88	28	18	24	28	1.98
18281428--18281480	26	2.0	26	92	7	90	26	16	26	30	1.97
18279232--18282434	903	3.6	900	86	3	4331	25	24	24	25	2.00
18282318--18282370	26	2.0	26	92	0	88	28	18	24	28	1.98
18283423--18283475	26	2.0	26	92	0	88	28	20	26	24	1.99
18284317--18284369	26	2.0	26	96	0	97	28	20	24	26	1.99
18285037--18285089	26	2.0	26	96	0	97	26	18	26	28	1.98
18284606--18288593	870	4.5	870	84	5	4799	25	23	24	25	2.00
18286801--18286853	26	2.0	26	100	0	106	26	20	26	26	1.99
18291662--18291714	26	2.0	26	89	7	81	30	16	24	28	1.97
18290800--18301802	903	12.4	885	84	5	12789	25	23	24	26	2.00
18294328--18294380	26	2.0	26	81	0	61	24	20	28	26	1.99
18296952--18297004	26	2.0	26	85	0	70	30	16	22	30	1.96
18297855--18297907	26	2.0	26	85	0	70	30	16	22	30	1.96
18299615--18299670	26	2.2	26	96	0	103	26	17	25	30	1.97
18300506--18300558	26	2.0	26	92	7	90	30	16	22	30	1.96
18301391--18301443	26	2.0	26	88	0	79	26	18	26	28	1.98
18301075--18302548	746	2.0	732	86	3	2080	24	25	26	23	2.00
18303026--18303078	26	2.0	26	100	0	106	26	20	26	26	1.99
18303052--18303419	155	2.4	154	83	3	450	24	28	28	18	1.98
18304068--18304120	26	2.0	26	96	0	97	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18304812--18304864	26	2.0	26	92	0	88	30	20	22	26	1.98
18303750--18305225	748	2.0	731	86	5	2040	24	25	26	22	2.00
18305704--18305756	26	2.0	26	96	0	97	28	20	24	26	1.99
18304482--18310614	890	6.9	887	85	6	7557	25	24	25	25	2.00
18306594--18306646	26	2.0	26	96	0	97	28	20	24	26	1.99
18307500--18307552	25	2.0	27	89	7	83	24	20	24	30	1.99
18309220--18309272	26	2.0	26	88	0	79	26	22	22	28	1.99
18310111--18310149	20	2.0	20	89	0	60	33	20	23	23	1.97
18310334--18310364	12	2.6	12	94	0	53	12	25	61	0	1.32
18312050--18312102	26	2.0	26	92	0	88	28	18	24	28	1.98
18312512--18312587	26	2.9	25	92	3	116	28	18	25	27	1.98
18313430--18313482	26	2.0	26	92	0	88	28	16	22	32	1.96
18314335--18314387	26	2.1	26	89	3	81	30	20	22	26	1.98
18315229--18315281	26	2.0	26	92	0	88	28	22	22	26	1.99
18312239--18317873	903	6.3	902	84	3	6885	25	23	24	26	2.00
18317029--18317081	26	2.0	26	85	7	72	28	18	22	30	1.98
18318691--18318743	26	2.0	26	96	0	97	26	18	26	28	1.98
18317880--18329463	902	12.9	899	85	4	14699	25	24	24	25	2.00
18320478--18320556	26	3.0	26	94	0	140	27	18	25	27	1.98
18321389--18321441	26	2.0	26	92	0	88	28	18	24	28	1.98
18324062--18324114	26	2.0	26	100	0	106	26	20	26	26	1.99
18324967--18325019	26	2.0	26	96	0	97	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18322284--18329463	905	8.0	901	85	3	9346	25	24	24	25	2.00
18325869--18325921	26	2.0	26	96	0	97	26	22	24	26	2.00
18326769--18326821	26	2.0	26	96	0	97	26	22	24	26	2.00
18327654--18327706	26	2.0	26	88	0	79	30	18	24	26	1.98
18328534--18328586	26	2.0	26	100	0	106	26	20	26	26	1.99
18330156--18330208	26	2.0	26	92	0	88	28	18	24	28	1.98
18331934--18331985	26	2.0	25	88	3	77	25	17	28	28	1.97
18332831--18332883	26	2.0	26	92	0	88	28	18	24	28	1.98
18333737--18333789	26	2.0	26	92	0	88	26	16	26	30	1.97
18334599--18334650	25	2.0	26	96	3	97	26	21	26	25	1.99
18335500--18335551	25	2.0	26	96	3	97	26	21	26	25	1.99
18334050--18345493	903	12.9	900	84	5	13894	25	24	24	25	2.00
18338139--18338188	26	1.9	26	91	0	82	28	20	22	30	1.98
18339016--18339068	26	2.0	26	96	0	97	26	18	26	28	1.98
18340722--18340754	11	3.0	11	95	0	57	15	36	30	18	1.91
18341685--18341738	26	2.1	26	89	0	81	29	18	25	25	1.98
18342576--18342628	26	2.0	26	92	0	88	26	16	26	30	1.97
18343459--18343511	26	2.0	26	89	7	81	26	16	26	30	1.97
18344367--18344414	25	1.9	25	91	0	78	27	18	27	27	1.98
18345822--18345874	26	2.0	26	92	0	88	30	20	22	26	1.98
18344934--18346051	558	2.0	558	89	1	1720	25	27	25	21	1.99
18347433--18347485	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18349923--18349975	26	2.0	26	96	0	97	28	20	24	26	1.99
18348309--18350731	899	2.7	886	87	3	3444	25	23	24	26	2.00
18351443--18351472	14	2.1	14	93	0	51	10	23	43	23	1.83
18351541--18351593	26	2.0	26	96	0	97	26	18	26	28	1.98
18354243--18356399	706	3.0	703	92	2	3428	25	23	24	26	2.00
18356373--18356423	26	2.0	26	92	0	84	25	17	25	31	1.97
18355641--18359066	873	3.8	890	86	4	4626	25	24	24	25	2.00
18362835--18362912	26	3.0	26	94	1	140	26	20	25	26	1.99
18362254--18365436	904	3.5	894	85	4	4189	26	23	23	26	2.00
18365968--18366072	26	4.0	26	92	0	183	27	20	24	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117