genome.fa.s90.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  78  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15948102--15948156	25	2.2	26	83	6	69	45	0	1	52	1.11
15948106--15948321	14	17.2	13	65	26	51	50	1	1	46	1.18
15948210--15948260	26	2.0	26	84	7	68	45	1	0	52	1.12
15948273--15948325	24	2.2	24	86	6	72	58	1	0	39	1.09
15948199--15948320	44	2.7	42	73	19	104	52	1	0	45	1.10
15948267--15948328	14	4.5	14	71	2	54	59	1	0	38	1.07
15948205--15948341	29	5.2	25	71	18	75	51	1	0	47	1.09
15948358--15948400	17	2.4	18	80	11	52	37	0	0	62	0.95
15948464--15948502	15	2.5	15	91	4	60	51	0	0	48	1.00
15948463--15948523	26	2.3	26	83	10	72	52	0	0	47	1.00
15948703--15948753	21	2.4	22	75	18	54	49	0	1	49	1.12
15948702--15948759	24	2.3	26	80	14	68	50	0	1	48	1.11
15949011--15949738	181	4.1	180	80	6	708	41	8	8	41	1.66
15950477--15950545	34	2.2	34	85	14	96	49	1	0	49	1.09
15950856--15950935	24	3.3	23	72	16	63	48	2	1	47	1.23
15951558--15951660	32	3.2	32	70	17	79	46	4	1	46	1.35
15951734--15951783	22	2.5	19	80	9	55	42	2	0	56	1.11
15952606--15952663	30	1.9	31	82	10	75	44	0	3	51	1.18
15952724--15952776	19	3.0	18	81	10	56	47	0	1	50	1.12
15952975--15955676	180	15.0	181	76	7	2033	40	7	10	41	1.68
15952975--15955676	533	5.0	534	77	8	1971	40	7	10	41	1.68
15955492--15955523	16	1.9	17	93	6	57	43	0	12	43	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15955525--15955820	145	2.0	146	81	7	343	36	6	12	44	1.68
15957213--15957265	18	3.0	18	75	10	56	49	1	0	49	1.12
15957220--15957269	17	2.9	17	80	13	57	50	2	0	48	1.12
15957566--15957613	16	3.1	15	80	11	53	50	0	0	50	1.00
15957604--15957645	17	2.5	17	84	3	50	47	0	2	50	1.14
15957823--15957890	21	3.2	21	72	6	66	42	1	0	55	1.08
15958298--15958332	18	1.9	18	88	11	54	51	0	0	48	1.00
15958357--15958475	57	2.0	60	81	13	142	47	0	1	49	1.17
15958403--15958495	20	4.7	19	72	22	77	46	0	1	52	1.07
15958435--15958504	20	3.5	20	79	15	81	45	0	1	52	1.09
15958447--15958499	15	3.6	15	78	12	56	45	0	0	54	0.99
15959142--15959920	181	4.3	179	78	8	744	43	10	7	38	1.67
15959142--15959921	363	2.2	353	81	6	879	43	10	7	38	1.67
15960212--15960298	41	2.1	41	83	12	108	40	4	2	52	1.34
15960238--15960316	20	4.1	18	74	19	63	41	3	1	53	1.27
15960277--15960318	17	2.4	18	80	7	52	42	2	2	52	1.27
15960210--15960318	33	3.5	30	73	18	87	41	4	1	52	1.33
15960338--15960374	19	1.9	19	94	0	65	45	0	0	54	1.00
15960331--15960369	16	2.5	15	84	8	51	43	0	0	56	0.99
15960433--15960474	22	1.9	22	85	0	57	42	2	0	54	1.13
15960532--15960575	20	2.3	19	88	4	61	40	2	4	52	1.34
15960589--15960627	15	2.8	13	85	14	51	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15960867--15960930	10	6.3	10	71	16	51	42	4	0	53	1.22
15960885--15960930	17	2.5	18	86	10	58	39	4	0	56	1.19
15961316--15961354	19	2.1	19	85	9	53	38	0	0	61	0.96
15961473--15961507	7	4.9	7	86	6	52	57	0	2	40	1.14
15961816--15961895	27	2.9	27	78	10	90	50	3	2	43	1.33
15963435--15963765	181	1.8	179	83	5	434	39	11	8	40	1.72
15963800--15963882	38	2.2	37	76	21	84	51	2	3	42	1.32
15963934--15963968	16	2.1	18	89	10	56	48	5	0	45	1.26
15964404--15964442	9	4.3	9	83	9	53	51	2	2	43	1.29
15964457--15964498	18	2.3	18	80	8	50	54	0	2	42	1.13
15971163--15972734	181	8.8	173	74	9	707	40	8	10	40	1.69
15972154--15972198	20	2.3	19	85	11	56	51	0	11	37	1.38
15970972--15974297	356	9.3	358	75	10	1858	40	8	9	41	1.68
15971331--15974444	181	17.4	181	75	6	2307	40	8	10	41	1.69
15972497--15972996	168	2.9	167	78	9	402	38	9	11	41	1.73
15975388--15976347	180	5.4	178	75	10	732	40	7	9	41	1.66
15975447--15976315	348	2.5	348	78	9	761	40	7	9	42	1.65
15976470--15976515	21	2.2	20	84	11	56	47	2	0	50	1.13
15976470--15976524	22	2.5	21	80	16	58	47	1	0	50	1.11
15976588--15976685	10	9.6	10	69	24	62	45	3	3	47	1.33
15977228--15977270	22	2.0	21	86	13	61	48	2	0	48	1.14
15977263--15977317	6	9.0	6	75	18	51	49	1	0	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15977275--15977317	19	2.3	19	91	0	68	51	0	0	48	1.00
15977255--15977311	13	4.6	13	80	10	59	50	1	0	47	1.11
15977349--15977386	19	2.1	19	85	5	51	65	0	0	34	0.93
15977368--15977419	14	3.6	16	78	19	60	55	0	0	44	0.99
15977555--15977593	18	2.2	17	86	4	51	43	0	2	53	1.14
15978117--15978204	32	2.6	33	76	16	92	52	0	1	46	1.08
15978981--15979021	13	3.0	14	79	17	50	46	2	0	51	1.14
15978971--15979021	26	2.0	26	84	7	68	45	1	0	52	1.12
15980163--15980212	20	2.5	21	77	9	59	46	4	4	46	1.40
15980202--15980234	16	2.1	16	88	11	50	54	0	6	39	1.25
15980362--15980421	18	3.2	19	77	22	56	53	0	0	46	1.00
15980366--15980422	29	2.0	29	86	6	80	54	0	0	45	0.99
15980808--15980842	13	2.6	13	95	4	61	45	0	0	54	0.99
15982803--15982845	22	1.9	23	86	13	63	51	4	2	41	1.35
15984432--15984476	19	2.3	20	81	11	58	53	0	2	44	1.13
15984500--15984581	14	5.8	14	69	13	53	51	2	1	45	1.22
15984640--15984684	23	1.9	24	86	4	65	53	4	2	40	1.33
15984663--15984718	12	4.7	12	75	20	55	55	1	0	42	1.10
15984671--15984718	18	2.6	19	81	18	66	54	2	0	43	1.12
15984801--15984841	13	3.2	13	83	16	59	46	4	0	48	1.23
15984802--15984865	13	4.8	13	76	17	53	42	3	0	54	1.16
15984791--15984851	25	2.7	21	71	23	52	44	3	0	52	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15984821--15984927	35	3.0	35	70	24	89	38	1	1	57	1.20
15984873--15984930	28	2.2	26	81	12	64	32	1	3	62	1.22
15984882--15984940	28	2.1	29	80	3	66	30	1	5	62	1.26
15985153--15985201	24	2.0	24	85	14	66	51	2	0	46	1.12
15985430--15985503	13	5.8	13	71	21	50	50	2	0	47	1.15
15985454--15985501	19	2.6	19	78	15	57	52	0	0	47	1.00
15985567--15985632	22	3.0	22	77	16	66	48	0	1	50	1.10
15985747--15985962	13	16.4	13	65	22	78	46	0	0	52	1.10
15985768--15985807	9	4.2	10	84	15	50	45	0	0	55	0.99
15985749--15985980	20	11.7	20	66	25	68	46	0	1	52	1.12
15985776--15985829	21	2.7	21	77	5	58	42	0	1	55	1.10
15985784--15985843	12	4.8	12	73	15	59	41	0	1	56	1.09
15985868--15985920	17	3.1	17	81	10	63	47	0	0	52	1.00
15985871--15985916	14	3.1	14	82	14	56	47	0	0	52	1.00
15985865--15985969	25	4.2	26	75	15	80	47	0	0	52	1.00
15985864--15985965	18	5.6	18	72	19	63	47	0	0	52	1.00
15985870--15985969	14	7.8	14	67	24	53	48	0	0	52	1.00
15985929--15985972	15	2.7	16	82	13	54	50	0	0	50	1.00
15986041--15986089	18	2.9	16	77	16	55	53	0	0	46	1.00
15987241--15987333	12	7.7	12	67	23	52	45	2	2	50	1.25
15987300--15987335	12	2.9	12	91	4	54	44	2	0	52	1.15
15987670--15987737	15	4.8	14	75	18	61	51	2	0	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15987656--15987721	34	1.9	34	84	6	89	51	1	0	46	1.10
15987747--15987820	18	3.8	18	75	18	60	52	1	1	44	1.17
15987727--15987824	41	2.4	42	76	11	103	51	2	1	45	1.19
15987814--15987863	15	3.5	15	72	8	50	44	0	0	56	0.99
15987943--15987997	25	2.2	26	86	3	76	50	1	0	47	1.11
15988331--15988375	10	4.7	9	81	13	54	53	0	0	46	1.00
15988331--15988375	19	2.3	20	88	3	74	53	0	0	46	1.00
15988493--15988590	14	6.8	13	71	16	52	52	2	2	43	1.24
15988492--15988573	29	2.7	32	76	17	79	53	1	1	43	1.16
15988528--15988592	25	2.8	23	73	15	62	53	1	3	41	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117