genome.fa.s90.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  73  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15613820--15614151	180	1.8	181	80	3	400	42	11	7	38	1.69
15613638--15619502	357	16.4	351	72	9	1593	41	10	8	39	1.69
15613541--15619613	181	34.0	181	74	8	3599	42	10	8	39	1.69
15613615--15619613	540	11.2	529	75	8	3294	42	10	8	39	1.69
15619490--15619758	147	1.8	147	79	7	312	46	10	5	36	1.63
15619624--15621417	181	10.1	180	76	8	1296	41	9	8	40	1.68
15621461--15624326	180	16.1	174	70	12	729	40	9	8	40	1.69
15622442--15624327	181	10.5	181	76	5	1377	40	9	9	40	1.70
15623133--15624383	539	2.3	534	81	5	1267	40	10	9	39	1.72
15624427--15625930	180	8.4	179	76	3	1089	40	11	8	39	1.71
15624427--15627424	359	8.3	355	71	11	1315	41	10	8	40	1.70
15626180--15626935	179	4.2	180	76	7	473	43	10	6	39	1.64
15626137--15627337	180	6.7	178	76	8	616	41	10	7	40	1.67
15626137--15627337	536	2.2	526	80	8	1243	41	10	7	40	1.67
15626460--15627165	174	4.0	174	75	9	423	40	10	6	41	1.66
15627507--15629276	181	9.8	180	74	8	1221	41	8	8	41	1.65
15629588--15636241	180	37.3	176	72	10	2743	41	10	8	39	1.69
15631420--15631453	17	1.9	18	88	5	52	41	11	8	38	1.73
15629584--15636241	361	18.7	358	71	11	2498	41	10	8	39	1.69
15632621--15634026	181	7.8	177	73	10	484	42	10	8	39	1.69
15632255--15637390	361	14.5	358	72	11	2930	41	10	8	40	1.69
15636800--15637265	181	2.6	181	79	7	428	42	7	8	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15638167--15645656	181	41.5	180	73	8	4111	40	8	9	41	1.68
15639265--15639293	14	2.0	15	93	6	51	41	10	6	41	1.66
15639512--15639547	18	2.0	18	88	0	54	44	8	8	38	1.65
15641714--15641747	17	1.9	18	88	5	52	29	5	8	55	1.54
15643893--15643930	19	2.0	19	100	0	76	31	0	0	68	0.90
15644168--15644798	180	3.5	180	78	5	573	41	8	10	39	1.70
15645767--15648272	181	14.0	181	74	10	1600	40	8	9	41	1.69
15645767--15648272	362	7.0	361	75	9	1762	40	8	9	41	1.69
15646314--15646346	17	1.9	17	93	0	57	42	0	9	48	1.35
15645778--15648272	543	4.7	538	77	8	2041	40	8	9	41	1.68
15646747--15647063	170	1.9	168	84	5	424	40	6	9	43	1.64
15646937--15647972	178	5.8	178	73	10	480	40	7	10	41	1.67
15645762--15648271	709	3.5	701	76	10	1724	40	8	9	41	1.69
15647839--15648241	172	2.3	177	75	11	400	41	7	8	42	1.64
15648944--15648985	18	2.4	18	84	15	61	45	9	0	45	1.36
15648277--15654731	358	18.0	362	73	9	2135	41	10	8	40	1.69
15651245--15651278	18	1.9	17	88	5	50	47	11	5	35	1.65
15651280--15651312	18	1.9	17	88	11	50	42	6	3	48	1.43
15648277--15654731	181	35.9	177	74	8	3700	41	10	8	40	1.69
15648277--15654989	718	9.4	711	75	8	4299	41	10	8	40	1.69
15654155--15654187	18	1.9	17	88	11	50	39	6	6	48	1.53
15655100--15655131	17	2.0	17	88	11	50	50	6	0	43	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15657295--15657331	18	2.0	19	89	5	58	56	0	2	40	1.13
15657420--15657765	177	1.9	181	83	5	445	41	10	7	40	1.67
15662528--15662560	18	1.9	17	88	11	50	48	3	6	42	1.43
15662161--15666555	181	24.5	180	75	7	2955	40	8	9	41	1.68
15662161--15666555	361	12.2	359	75	8	3151	40	8	9	41	1.68
15662161--15666613	540	8.3	536	75	8	3172	40	8	9	41	1.68
15666484--15666727	135	1.8	135	80	3	294	38	8	9	43	1.68
15666303--15666887	311	1.9	314	79	8	670	38	8	10	42	1.70
15666688--15667664	180	5.5	178	77	9	838	40	7	9	42	1.65
15666619--15667614	356	2.8	349	80	8	977	40	7	9	42	1.66
15667559--15667765	111	1.9	111	81	2	254	37	7	8	47	1.61
15667946--15669504	180	8.7	181	79	4	1426	41	9	8	41	1.67
15668117--15669491	181	7.7	176	78	6	972	41	9	8	40	1.68
15669544--15671950	181	13.3	179	78	5	1909	41	10	8	40	1.68
15669544--15673003	723	4.8	718	76	8	2521	41	10	8	39	1.69
15672021--15673003	182	5.4	179	75	10	754	42	10	8	38	1.69
15672963--15673100	67	2.1	67	90	0	213	38	15	5	40	1.70
15673048--15674064	181	5.7	179	78	6	959	41	10	7	40	1.67
15673990--15674018	14	2.0	15	93	6	51	51	0	6	41	1.28
15673937--15674204	140	1.9	142	87	5	402	42	8	7	40	1.65
15674078--15677103	180	16.8	177	73	10	1865	42	9	7	40	1.67
15673273--15674927	857	1.9	863	79	5	1844	42	9	7	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15674981--15675769	176	4.4	177	72	12	478	42	10	7	39	1.68
15675761--15675804	20	2.1	21	95	4	81	56	0	11	31	1.35
15674084--15677051	361	8.3	358	73	11	1182	42	9	8	40	1.67
15675781--15677103	541	2.5	541	80	6	1495	42	9	7	40	1.66
15676763--15677403	325	2.0	326	81	4	767	41	8	8	41	1.65
15677088--15677717	181	3.5	179	79	4	641	40	9	9	41	1.69
15676664--15677606	506	1.9	503	81	4	1157	41	9	8	40	1.67
15677744--15678724	357	2.8	348	72	11	853	41	10	8	38	1.70
15677744--15678759	177	5.7	176	73	12	722	42	10	8	38	1.70
15684357--15684433	38	2.0	38	92	0	127	25	9	32	32	1.87
15684645--15690938	181	35.3	181	73	9	3682	40	8	9	41	1.68
15685373--15694263	181	50.0	177	71	11	3770	40	8	9	41	1.68
15684645--15690936	541	11.8	541	75	8	4187	40	8	9	41	1.68
15687449--15690723	720	4.6	717	74	11	1831	40	8	9	41	1.68
15691011--15694011	182	16.8	175	73	10	919	38	8	10	42	1.69
15691184--15693714	360	7.0	354	74	8	1140	39	8	10	41	1.69
15694270--15698957	181	26.3	181	74	8	2980	39	8	10	41	1.70
15694270--15699762	180	30.6	177	72	11	2850	39	8	10	41	1.69
15698923--15698988	31	2.1	31	97	0	123	40	1	6	51	1.36
15699961--15700297	179	1.9	181	85	3	466	38	8	8	43	1.66
15699992--15701119	181	6.3	180	73	8	414	39	7	10	42	1.68
15701630--15709477	363	21.6	362	68	15	2017	40	8	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15701591--15709477	181	43.3	181	70	12	2886	40	8	10	41	1.69
15702991--15703305	163	1.9	163	80	5	368	41	9	11	37	1.73
15703326--15705395	353	5.8	352	75	10	1417	39	8	10	41	1.69
15704402--15704725	165	2.0	165	83	6	408	40	8	8	41	1.67
15705309--15705475	87	1.9	87	91	4	275	39	5	6	47	1.54
15706165--15706234	33	2.1	33	86	0	95	37	1	4	57	1.27
15709587--15711511	361	5.3	359	73	10	895	40	8	9	41	1.69
15709499--15711511	181	11.2	181	75	7	1362	39	8	9	41	1.69
15711354--15711669	157	2.0	158	83	3	395	36	10	9	43	1.70
15711589--15718000	181	36.0	179	72	9	2774	39	8	10	42	1.68
15711606--15712447	180	4.7	179	77	6	556	39	8	9	43	1.66
15712908--15717675	357	13.3	354	72	11	1085	40	8	9	41	1.68
15712514--15728123	541	29.5	534	70	13	3857	40	8	9	41	1.68
15712514--15718000	181	30.7	177	73	8	3103	39	8	10	41	1.69
15712862--15717840	529	9.3	529	74	10	1775	39	8	9	41	1.68
15717714--15718324	323	1.9	323	79	2	690	40	7	10	40	1.69
15718034--15721346	181	18.6	181	74	10	2046	40	7	9	42	1.66
15718189--15721343	545	5.9	536	74	11	1634	40	7	9	42	1.66
15721381--15723525	181	11.9	180	74	10	1312	41	8	8	41	1.66
15721332--15723186	179	10.3	177	72	10	541	41	8	8	41	1.66
15723108--15723436	169	1.9	171	82	4	407	37	6	10	45	1.64
15723389--15723655	130	2.1	130	95	0	480	42	9	10	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15724200--15724768	175	3.2	174	77	8	406	39	7	9	43	1.66
15726668--15726710	20	2.2	20	87	8	61	53	6	4	34	1.49
15725749--15728172	181	13.5	181	77	5	1789	40	8	9	41	1.68
15725749--15736204	540	19.0	542	70	12	3662	40	8	9	41	1.69
15725749--15728115	722	3.3	713	78	7	1999	40	8	9	41	1.67
15728235--15730267	538	3.8	528	77	8	1680	40	9	9	40	1.70
15728497--15730287	181	10.0	180	78	7	1611	40	9	9	41	1.69
15730170--15730387	120	1.8	120	83	2	294	48	9	11	31	1.71
15731274--15731315	20	2.2	19	86	4	57	42	2	2	52	1.27
15730595--15736169	181	30.7	179	71	10	1818	40	8	10	41	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117