genome.fa.s90.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  21  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6047298--6047334	10	3.7	10	89	10	58	51	2	0	45	1.15
6047301--6047385	34	2.5	34	78	3	91	42	4	4	48	1.45
6047356--6047394	16	2.6	15	84	11	53	41	2	2	53	1.28
6047301--6047464	84	2.0	84	80	7	190	37	5	7	49	1.54
6049808--6049873	32	2.1	32	81	16	75	75	7	7	9	1.18
6052135--6052164	16	1.9	16	93	6	53	46	23	6	23	1.75
6052573--6052604	13	2.5	13	100	0	64	43	15	6	34	1.72
6055828--6056045	72	3.0	72	97	0	418	35	7	15	41	1.75
6061407--6061440	16	2.2	15	89	5	50	35	0	11	52	1.38
6072844--6072875	15	2.1	15	94	0	55	43	3	0	53	1.16
6084501--6084552	2	26.0	2	84	0	59	46	5	3	44	1.45
6084502--6084550	10	4.9	10	87	0	71	46	6	4	42	1.47
6084501--6084557	22	2.8	21	82	10	73	43	5	7	43	1.54
6091338--6091367	2	15.5	2	93	6	53	50	0	50	0	1.00
6097527--6097551	3	8.3	3	100	0	50	32	0	0	68	0.90
6102330--6102377	20	2.5	20	89	3	71	56	0	0	43	0.99
6102369--6102437	36	1.9	35	85	8	95	55	0	1	43	1.08
6102474--6102507	3	11.3	3	100	0	68	32	0	0	67	0.91
6102516--6102550	17	2.0	18	88	5	54	54	11	0	34	1.37
6103515--6103553	15	2.6	15	83	0	51	23	10	41	25	1.86
6103902--6103979	24	3.3	24	79	15	74	43	0	0	56	0.99
6103965--6104010	13	3.5	13	81	0	56	28	0	2	69	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6104560--6104617	29	2.0	29	100	0	116	31	17	13	37	1.89
6112214--6112261	3	16.0	3	100	0	96	33	0	0	66	0.92
6118467--6118519	9	5.7	9	73	8	52	52	3	1	41	1.30
6118455--6118552	22	5.0	19	71	14	74	53	7	1	38	1.35
6118468--6118554	10	8.6	10	74	13	54	55	5	1	37	1.31
6118510--6118554	22	2.0	24	91	8	76	57	6	0	35	1.25
6118697--6118751	19	2.8	19	86	2	65	49	9	0	41	1.34
6118815--6118851	18	2.1	18	89	0	56	43	5	5	45	1.49
6118988--6119028	15	2.5	17	84	7	59	73	4	0	21	1.02
6119007--6119054	19	2.6	18	83	9	60	77	4	0	18	0.93
6119312--6119459	9	15.7	9	72	14	102	37	2	4	56	1.33
6119340--6119503	19	8.8	18	75	14	131	35	0	3	59	1.19
6119302--6119502	10	21.6	9	70	18	101	34	1	3	59	1.28
6119693--6119738	20	2.3	20	76	0	56	52	2	4	41	1.33
6119755--6119785	14	2.2	14	94	0	53	19	3	6	70	1.22
6121296--6121339	21	2.2	20	83	4	52	61	2	9	27	1.38
6122259--6122426	66	2.6	66	86	4	218	54	16	11	18	1.71
6122259--6122438	63	2.8	65	84	5	222	55	15	11	18	1.70
6123124--6123170	20	2.3	20	85	3	58	44	0	2	53	1.12
6127718--6127796	40	2.0	41	90	7	126	41	6	29	22	1.78
6132219--6132375	52	3.0	52	87	5	219	42	8	22	26	1.83
6133526--6133554	11	2.5	12	88	11	51	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6137858--6137995	71	2.0	70	92	1	231	51	11	15	21	1.75
6140171--6140270	50	2.0	50	98	0	191	40	12	11	37	1.78
6140177--6140285	50	2.2	50	90	3	166	39	12	10	37	1.77
6140475--6140522	3	16.0	3	91	0	78	31	2	2	64	1.16
6148450--6148508	21	2.7	21	81	5	55	40	1	6	50	1.39
6149126--6149176	16	3.1	16	78	15	59	29	3	0	66	1.09
6149135--6149186	16	3.0	17	80	11	61	32	3	0	63	1.12
6149136--6149178	18	2.3	18	88	4	59	30	2	0	67	1.03
6149417--6149458	12	3.3	12	87	12	66	38	0	11	50	1.40
6149410--6149469	16	4.2	15	83	14	65	41	0	11	46	1.40
6155048--6155093	23	1.9	25	82	8	60	17	10	15	56	1.67
6155696--6155732	19	1.9	19	88	0	56	72	2	0	24	0.97
6155986--6156029	15	2.8	17	80	16	58	36	0	11	52	1.38
6156890--6156977	30	2.9	29	75	14	90	37	11	3	47	1.56
6157078--6157115	18	2.2	18	86	9	53	63	0	0	36	0.95
6157030--6157104	30	2.5	30	74	6	73	60	1	4	34	1.24
6157086--6157205	56	2.1	56	90	3	188	50	5	0	44	1.23
6160027--6160065	20	2.0	20	94	0	69	23	0	5	71	1.05
6160035--6160078	20	2.2	20	84	8	54	27	0	6	65	1.17
6160697--6160759	27	2.4	25	81	5	63	47	1	4	46	1.33
6161459--6161494	18	2.0	18	88	0	54	55	0	0	44	0.99
6172792--6172864	32	2.4	32	82	13	91	46	0	1	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6172868--6172939	31	2.3	30	81	13	83	56	1	2	38	1.22
6172939--6173000	29	2.2	28	85	11	90	46	1	0	51	1.10
6185392--6185421	15	1.9	16	93	6	53	63	0	3	33	1.11
6185930--6185959	9	3.3	9	90	0	51	46	0	13	40	1.43
6186240--6186301	21	2.8	22	80	9	72	56	1	1	40	1.19
6187600--6187669	6	10.7	6	79	13	59	18	1	2	77	0.97
6187605--6187648	17	2.6	16	85	10	52	20	0	2	77	0.88
6187619--6187669	7	7.1	7	82	8	50	21	1	0	76	0.88
6187623--6187669	15	3.2	14	79	8	58	21	2	0	76	0.89
6188683--6188725	13	3.2	13	77	6	50	51	0	0	48	1.00
6188683--6188735	27	2.0	27	88	0	79	49	1	0	49	1.12
6189221--6189265	17	2.6	17	80	13	56	57	0	0	42	0.98
6190300--6190341	20	2.1	20	86	8	59	40	9	0	50	1.35
6194374--6194411	20	1.9	19	89	5	58	34	0	0	65	0.93
6202549--6202580	2	16.0	2	93	0	55	50	3	0	46	1.17
6202833--6202873	11	3.5	11	81	12	55	73	0	0	26	0.84
6202828--6202877	16	3.1	16	86	11	59	72	0	0	28	0.86
6202835--6202903	24	3.0	24	79	12	81	69	0	0	30	0.89
6202835--6202883	16	3.1	15	85	8	53	73	0	0	26	0.83
6205515--6205563	20	2.5	20	84	12	66	53	2	0	44	1.12
6207234--6207290	24	2.2	27	87	9	84	31	5	1	61	1.28
6207235--6207317	23	3.6	21	73	16	67	33	3	1	61	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6207233--6207312	24	3.3	24	75	12	83	32	3	1	62	1.21
6215240--6215281	21	2.0	21	85	0	57	40	7	0	52	1.29
6217840--6217995	52	3.0	52	82	3	163	26	23	8	41	1.82
6218021--6218059	11	3.5	11	82	0	51	53	25	0	20	1.45
6218302--6218400	25	4.0	24	74	2	81	20	36	9	34	1.84
6218301--6218396	50	1.9	50	87	4	140	19	36	10	33	1.86
6219740--6219834	35	2.7	37	77	21	114	57	2	0	40	1.10
6232991--6233022	6	5.7	6	92	7	50	0	0	15	84	0.63
6234709--6234744	17	2.1	17	89	0	54	41	5	5	47	1.50
6235123--6235156	15	2.2	16	94	5	61	64	0	0	35	0.94
6235140--6235177	18	2.1	19	85	5	51	57	0	0	42	0.98
6235394--6235432	21	1.9	19	85	10	51	56	7	0	35	1.28
6235443--6235480	2	19.0	2	94	0	67	52	0	0	47	1.00
6240189--6240217	12	2.3	13	94	5	51	3	13	0	82	0.79
6247479--6247523	18	2.5	18	100	0	90	44	6	17	31	1.75
6250518--6250555	20	1.9	20	89	10	60	50	5	15	28	1.66
6251112--6251153	18	2.3	18	87	0	57	54	7	0	38	1.28
6252313--6252351	3	13.0	3	100	0	78	66	0	0	33	0.92
6252540--6252568	3	9.7	3	100	0	58	65	0	0	34	0.93
6252567--6252606	3	13.3	3	100	0	80	32	0	0	67	0.91
6254388--6254451	32	2.0	31	82	8	76	62	3	3	31	1.26
6254534--6254565	17	1.9	17	93	6	57	43	0	3	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6254585--6254707	59	2.1	58	87	4	176	43	4	10	41	1.61
6262065--6262116	2	26.0	2	88	0	59	40	0	9	50	1.35
6262071--6262124	12	4.3	13	79	9	51	38	0	12	48	1.42
6262069--6262124	26	2.2	26	90	6	87	39	0	12	48	1.41
6269646--6269680	13	2.5	14	90	9	54	31	11	0	57	1.34
6271955--6271996	21	2.0	21	85	0	57	50	2	2	45	1.27
6272958--6272996	2	19.5	2	89	0	60	48	2	2	46	1.29
6276610--6276648	21	2.0	21	85	10	55	46	5	30	17	1.70
6283360--6283385	2	13.0	2	100	0	52	50	0	0	50	1.00
6284194--6284232	17	2.3	16	83	12	51	84	0	7	7	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117