genome.fa.s90.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  32  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8164112--8164453	119	2.9	114	82	9	409	42	6	13	37	1.71
8170616--8170647	16	2.0	16	100	0	64	43	12	18	25	1.85
8171906--8171999	49	1.9	49	86	4	136	26	17	6	50	1.70
8173999--8174043	19	2.4	19	92	3	74	35	15	13	35	1.87
8174746--8174799	21	2.6	21	84	0	81	38	16	3	40	1.66
8174746--8174806	21	2.9	20	78	9	68	39	16	3	40	1.65
8175808--8175920	8	13.4	8	71	15	68	8	14	0	76	1.00
8175819--8175896	24	3.2	24	80	14	88	10	14	0	75	1.04
8175844--8175905	17	3.7	16	77	14	54	8	12	0	79	0.94
8175818--8175916	15	6.4	16	71	19	68	10	13	0	76	1.01
8175844--8175908	10	6.4	10	73	16	62	7	12	0	80	0.91
8175863--8175927	28	2.3	29	82	12	82	7	12	1	78	1.02
8179250--8179294	15	3.1	15	76	23	51	60	20	4	15	1.52
8181386--8181498	4	29.0	4	68	12	65	69	7	4	19	1.30
8181392--8181466	27	2.8	27	70	13	64	69	6	5	18	1.30
8181430--8181498	19	3.5	19	76	11	68	68	4	5	21	1.29
8190808--8190858	21	2.4	21	75	18	52	74	7	9	7	1.22
8197378--8197429	19	2.8	19	82	8	54	11	5	0	82	0.82
8197443--8197480	11	3.6	11	89	6	53	28	0	0	71	0.87
8197421--8197479	19	3.1	18	81	11	64	22	0	1	76	0.88
8197396--8197461	30	2.2	30	83	5	80	21	1	1	75	0.96
8197604--8197682	31	2.7	31	84	7	103	25	5	13	55	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8202119--8202177	22	2.7	22	78	0	64	33	28	13	23	1.93
8202415--8202563	42	3.5	42	85	3	190	34	15	16	33	1.90
8202818--8202858	15	2.7	15	78	21	50	17	0	4	78	0.93
8203822--8203873	20	2.7	19	82	11	61	13	1	5	78	1.01
8203830--8203882	19	2.9	18	80	5	61	13	1	7	77	1.06
8203976--8204054	23	3.3	23	82	12	88	22	5	16	55	1.60
8204047--8204086	19	2.0	20	90	4	64	17	5	20	57	1.58
8204095--8204154	19	3.0	21	76	18	74	23	5	15	56	1.58
8204091--8204189	11	9.0	11	65	26	50	24	6	14	55	1.61
8204123--8204240	55	2.2	53	82	11	125	22	7	14	55	1.65
8205862--8205915	27	2.0	27	85	3	72	46	0	5	48	1.25
8206180--8206246	26	2.4	28	78	9	75	34	1	2	61	1.20
8206186--8206218	18	1.9	17	88	11	50	30	0	3	66	1.06
8210023--8210093	33	2.2	33	89	5	108	46	5	11	36	1.63
8210978--8211109	65	2.0	65	85	8	180	45	8	9	36	1.68
8212381--8212410	12	2.6	12	94	5	53	26	0	3	70	1.03
8212379--8212417	19	2.2	17	90	9	60	23	0	5	71	1.05
8223152--8223311	80	2.0	80	85	4	216	45	26	6	21	1.76
8225952--8225983	10	3.2	10	90	0	55	21	28	0	50	1.49
8231267--8231319	18	3.1	18	79	15	58	16	0	3	79	0.88
8232072--8232113	8	5.0	8	88	8	57	14	2	0	83	0.75
8232072--8232112	17	2.3	18	91	4	66	12	2	0	85	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8232254--8232369	42	2.7	43	88	2	155	43	20	12	23	1.85
8232393--8232870	41	11.6	41	82	6	529	37	20	14	28	1.91
8232393--8232870	83	5.8	82	82	7	529	37	20	14	28	1.91
8232393--8232870	166	2.9	163	86	5	629	37	20	14	28	1.91
8234564--8234617	11	4.7	11	81	6	63	3	12	0	83	0.78
8234569--8234617	22	2.2	22	89	7	73	2	14	0	83	0.73
8241068--8241119	18	3.1	18	79	17	58	17	0	3	78	0.89
8244583--8244782	101	2.0	101	83	3	251	40	20	12	27	1.88
8244766--8244838	33	2.2	33	85	4	94	35	19	13	31	1.91
8246542--8247151	205	3.0	205	84	7	866	38	14	13	34	1.85
8246522--8247119	196	3.0	196	83	7	824	37	13	14	34	1.85
8250416--8250762	40	8.3	40	76	10	293	24	15	17	42	1.88
8250421--8250866	40	10.4	44	74	11	272	24	14	17	43	1.86
8250421--8250866	88	5.2	86	76	9	389	24	14	17	43	1.86
8250424--8250768	173	2.0	168	85	6	453	23	14	17	43	1.86
8250420--8250834	128	3.3	124	77	12	364	24	14	17	43	1.87
8250740--8250857	45	2.7	44	79	8	123	24	13	15	46	1.82
8250509--8250832	173	1.9	172	83	6	422	25	14	16	43	1.86
8251096--8251127	7	4.6	7	100	0	64	28	0	0	71	0.86
8252101--8252139	19	2.2	19	90	9	64	23	0	5	71	1.05
8252348--8252379	9	3.4	9	91	8	55	81	0	0	18	0.70
8252347--8252379	10	3.4	10	91	8	59	81	0	0	18	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8252405--8252725	163	2.0	162	79	6	344	41	9	10	38	1.73
8256742--8256783	21	2.0	21	100	0	84	42	19	23	14	1.87
8256877--8256904	3	9.3	3	100	0	56	32	0	0	67	0.91
8257241--8257265	13	1.9	13	100	0	50	48	20	8	24	1.76
8261842--8261911	28	2.6	27	80	10	79	67	4	10	18	1.36
8262525--8262588	27	2.5	26	80	10	69	28	0	3	68	1.04
8262541--8262574	9	3.9	9	96	3	61	23	0	5	70	1.09
8262541--8262574	17	1.9	17	94	5	59	23	0	5	70	1.09
8262591--8262634	20	2.2	20	91	0	70	47	0	0	52	1.00
8268043--8268083	21	2.0	21	95	0	73	39	12	2	46	1.54
8270857--8270899	22	2.0	22	86	9	61	48	0	0	51	1.00
8276070--8276101	12	2.5	13	95	5	57	62	0	0	37	0.95
8276657--8276684	2	14.0	2	100	0	56	50	0	0	50	1.00
8277355--8277386	3	10.7	3	100	0	64	34	0	0	65	0.93
8280415--8280487	23	3.0	24	78	11	69	46	6	5	41	1.54
8284506--8284548	2	21.5	2	85	0	59	44	6	0	48	1.29
8287048--8287078	4	7.8	4	100	0	62	0	51	22	25	1.48
8287428--8287459	7	4.6	7	100	0	64	68	0	0	31	0.90
8288532--8288564	2	17.0	2	93	6	59	48	0	0	51	1.00
8292655--8292732	27	2.7	30	75	16	76	33	1	2	62	1.17
8292687--8292786	41	2.6	38	83	10	116	39	0	1	60	1.04
8292887--8292948	20	3.0	20	80	15	74	59	3	1	35	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8294254--8294294	15	2.8	16	78	14	52	78	0	7	14	0.96
8294253--8294292	21	1.9	21	84	0	53	75	0	7	17	1.03
8296980--8297008	15	2.0	15	93	6	51	41	10	0	48	1.37
8297240--8297283	23	2.0	22	86	13	63	45	9	0	45	1.35
8298538--8298578	22	1.9	21	85	5	55	14	2	12	70	1.26
8304220--8304464	63	4.0	61	74	13	189	41	7	7	43	1.61
8304212--8304478	126	2.1	126	84	4	351	41	6	8	42	1.63
8304283--8304478	63	3.1	61	80	8	216	40	5	9	43	1.61
8304495--8304657	64	2.6	63	82	5	195	45	3	8	42	1.52
8304400--8304594	94	2.1	94	81	6	227	41	4	11	42	1.61
8304283--8304680	221	1.8	219	80	11	492	40	5	9	43	1.61
8304767--8304935	89	1.9	90	83	1	223	36	2	8	52	1.47
8304918--8304947	13	2.4	13	94	5	53	30	0	6	63	1.20
8308213--8308276	32	2.1	30	82	11	76	46	0	1	51	1.10
8316555--8316891	60	5.9	58	74	13	279	35	10	6	48	1.62
8316555--8316779	119	1.9	120	88	6	341	34	10	5	49	1.60
8316676--8316888	105	2.0	105	85	4	286	38	9	6	46	1.62
8316814--8316969	81	1.9	81	88	5	233	41	5	3	50	1.43
8316908--8316942	19	1.9	18	88	11	54	54	5	0	40	1.24
8316944--8316979	14	2.6	14	87	12	56	30	0	2	66	1.06
8318714--8318744	13	2.4	13	94	0	53	70	3	6	19	1.22
8319966--8320055	40	2.1	42	86	10	121	33	18	5	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8323075--8323152	41	1.9	41	94	0	138	24	6	24	44	1.77
8323078--8323144	22	3.2	22	63	26	54	25	7	23	43	1.80
8333210--8333281	35	2.1	35	100	0	144	13	41	25	19	1.88
8334470--8334533	33	1.9	33	81	6	76	26	1	9	62	1.35
8335115--8335140	2	13.0	2	100	0	52	0	0	50	50	1.00
8336643--8336687	2	22.5	2	100	0	90	0	48	0	51	1.00
8337791--8337820	9	3.4	9	90	9	53	43	10	0	46	1.37
8343005--8343034	2	15.0	2	100	0	60	50	0	0	50	1.00
8360779--8360805	13	2.1	13	100	0	54	40	14	0	44	1.46
8366128--8366186	31	1.9	30	89	3	91	37	6	1	54	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117