genome.fa.s90.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  27  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7211613--7211639	9	3.0	9	100	0	54	88	0	11	0	0.50
7216048--7216080	14	2.4	14	90	10	50	87	0	9	3	0.63
7216286--7216322	17	2.2	17	95	0	65	43	18	13	24	1.86
7217407--7217436	15	2.0	15	93	0	51	20	30	13	36	1.90
7217967--7218059	22	4.2	22	75	8	91	32	25	13	27	1.94
7217967--7218059	44	2.1	44	86	4	125	32	25	13	27	1.94
7218150--7218212	22	2.9	22	73	17	76	28	30	17	23	1.97
7217896--7218363	172	2.7	172	88	3	690	32	18	14	34	1.91
7218366--7218473	55	2.0	55	86	0	153	25	19	19	35	1.95
7218431--7218611	87	2.1	88	89	3	276	22	19	18	39	1.92
7218599--7218648	23	2.2	23	92	0	82	22	20	26	32	1.98
7218422--7218928	204	2.5	196	80	7	561	20	18	19	41	1.90
7218622--7218830	87	2.3	90	78	9	237	19	18	21	41	1.90
7218716--7219057	109	3.1	110	80	5	381	22	18	19	40	1.91
7219491--7219566	34	2.2	34	79	6	82	23	15	11	48	1.78
7220959--7221010	18	2.9	18	78	16	54	25	0	5	69	1.10
7220995--7221041	21	2.2	21	84	3	58	29	0	14	55	1.40
7221403--7221522	16	7.7	15	72	12	73	49	30	2	18	1.61
7221393--7221442	7	6.1	8	76	21	50	50	28	0	22	1.49
7221421--7221522	30	3.3	32	80	11	99	49	31	2	16	1.61
7221470--7221543	14	5.1	14	76	9	69	50	35	1	13	1.50
7221470--7221543	28	2.6	29	85	8	89	50	35	1	13	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7221539--7221594	14	3.9	14	80	13	60	51	33	0	14	1.42
7221552--7221583	16	2.0	16	93	0	55	43	34	0	21	1.53
7221499--7221596	51	2.0	49	89	4	151	51	34	0	14	1.43
7223004--7223040	18	2.0	20	89	10	60	37	2	0	59	1.12
7224067--7224093	2	13.5	2	100	0	54	51	0	0	48	1.00
7225408--7225500	29	3.2	29	80	7	93	51	3	0	45	1.17
7225970--7226020	19	2.7	19	75	19	61	43	0	0	56	0.99
7226913--7226948	2	18.0	2	100	0	72	50	0	0	50	1.00
7228686--7228737	25	2.2	25	89	6	81	42	0	3	53	1.19
7230049--7230095	7	6.6	7	79	13	51	53	2	0	44	1.12
7240936--7241000	33	1.9	33	87	12	96	40	7	1	50	1.40
7253262--7253299	20	2.0	18	90	10	58	34	7	10	47	1.67
7253308--7253450	21	6.5	21	68	18	76	28	2	11	57	1.46
7253310--7253432	47	2.6	47	87	6	162	28	1	13	56	1.48
7253327--7253444	47	2.6	46	86	7	161	30	1	11	55	1.46
7253620--7253695	18	3.9	19	80	16	77	34	5	11	48	1.62
7256430--7256516	44	2.0	45	81	4	106	22	18	29	28	1.97
7258704--7258751	21	2.3	20	76	16	53	18	8	2	70	1.22
7260136--7260173	18	2.2	17	90	4	58	81	10	0	7	0.87
7260619--7260658	6	6.8	6	82	5	55	85	10	0	5	0.75
7260618--7260669	23	2.3	22	83	9	68	80	11	0	7	0.89
7263540--7263584	23	2.0	23	100	0	90	31	31	6	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7263711--7263744	15	2.3	15	90	5	52	67	0	11	20	1.21
7264640--7264678	18	2.1	19	90	4	62	41	17	7	33	1.79
7265710--7265802	43	2.2	43	92	1	152	30	10	19	39	1.85
7265752--7266418	137	5.0	136	83	5	787	28	13	15	42	1.85
7265741--7266365	275	2.3	271	84	5	800	28	13	15	42	1.85
7266443--7266623	99	1.8	100	84	5	251	25	9	19	44	1.82
7267774--7267856	11	7.4	11	71	14	62	20	2	2	74	1.04
7267772--7267815	23	2.0	22	86	4	61	22	4	0	72	1.02
7267997--7268038	19	2.2	20	86	4	59	66	0	2	30	1.04
7269237--7269271	17	2.1	17	89	10	54	34	14	17	34	1.90
7269420--7269582	84	1.9	84	90	2	256	35	13	15	34	1.87
7269810--7269847	12	3.2	12	96	0	67	50	13	7	28	1.69
7271175--7271213	20	2.0	20	89	0	60	76	2	0	20	0.90
7273024--7273103	16	4.7	16	76	7	61	31	7	12	48	1.68
7274420--7274475	13	4.3	13	86	6	69	17	3	0	78	0.89
7274445--7274514	23	3.1	23	82	10	90	15	5	2	75	1.11
7274445--7274514	22	3.1	22	78	15	81	15	5	2	75	1.11
7278495--7278528	11	2.8	12	91	8	52	20	0	2	76	0.92
7279146--7279201	20	2.8	20	86	0	76	35	7	3	53	1.46
7279175--7279388	55	3.9	56	82	6	181	28	7	9	53	1.61
7279230--7279300	35	2.1	32	84	7	88	29	8	8	53	1.60
7279263--7279305	23	1.9	23	90	4	70	30	9	6	53	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7279316--7279359	22	2.0	22	86	4	63	22	4	13	59	1.53
7279339--7279407	31	2.2	32	84	10	88	28	7	11	52	1.64
7279468--7279523	24	2.3	23	82	8	67	30	3	10	55	1.51
7279639--7279713	20	3.9	20	68	10	57	33	4	10	52	1.55
7282940--7282974	18	2.0	18	88	5	54	42	20	0	37	1.52
7282999--7283042	23	1.9	23	85	0	61	31	20	6	40	1.79
7283376--7283542	39	4.3	38	76	3	154	28	12	22	37	1.90
7283376--7283562	77	2.5	77	81	7	206	27	11	21	39	1.87
7283547--7283777	43	5.3	43	79	8	209	29	11	18	41	1.85
7283547--7283777	87	2.7	86	81	6	234	29	11	18	41	1.85
7284686--7284743	16	3.6	16	80	2	62	29	8	8	53	1.61
7284697--7284759	32	1.9	33	83	3	83	26	7	11	53	1.63
7284716--7284783	17	3.8	18	79	7	59	26	7	13	52	1.66
7288463--7288496	18	1.9	18	88	5	52	82	0	5	11	0.83
7288451--7288498	25	1.9	25	83	8	62	77	4	4	14	1.08
7288870--7288926	30	1.9	30	88	0	87	64	15	5	14	1.45
7289322--7289381	12	4.8	13	76	15	63	83	6	8	1	0.88
7289312--7289381	18	3.7	19	79	9	72	81	7	10	1	0.93
7289328--7289381	6	8.8	6	84	11	56	83	7	7	1	0.88
7289311--7289374	25	2.6	25	87	5	94	79	7	12	0	0.92
7289374--7289406	17	1.9	17	93	0	57	69	0	0	30	0.88
7289445--7289498	3	18.3	3	84	3	74	61	3	1	33	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7289581--7289724	26	5.5	26	73	3	92	28	25	25	21	1.99
7289685--7289737	26	2.0	26	81	0	61	32	18	22	26	1.97
7289952--7290307	117	3.1	115	80	3	354	36	17	23	23	1.94
7301751--7301784	5	6.8	5	90	10	52	82	0	2	14	0.79
7302644--7302689	3	15.3	3	100	0	92	67	0	0	32	0.91
7302731--7302779	3	16.7	3	82	4	64	61	4	2	32	1.26
7302872--7302947	26	2.9	26	70	0	71	31	25	25	18	1.97
7303799--7303854	12	4.5	13	79	18	57	51	0	0	48	1.00
7303799--7303861	27	2.5	23	82	14	72	49	0	0	50	1.00
7303849--7303890	22	1.9	22	85	0	57	35	0	2	61	1.09
7303834--7303886	18	2.9	18	75	13	54	39	0	1	58	1.09
7305124--7305158	2	18.0	2	94	5	63	51	0	0	48	1.00
7308559--7308598	21	1.9	21	100	0	80	50	10	7	32	1.64
7312686--7312716	16	1.9	16	93	0	53	0	25	0	74	0.82
7313386--7313433	25	2.0	24	87	4	69	37	4	8	50	1.52
7313583--7313637	2	27.0	2	85	10	60	45	0	7	47	1.30
7313583--7313646	22	3.0	22	88	8	89	43	0	12	43	1.42
7316740--7316765	2	13.0	2	100	0	52	50	0	0	50	1.00
7324055--7324104	2	26.0	2	88	8	77	48	0	52	0	1.00
7326805--7326844	14	2.8	14	88	3	53	82	0	17	0	0.67
7337831--7337863	2	16.5	2	100	0	66	48	0	0	51	1.00
7342603--7342649	22	2.1	22	81	14	53	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7349496--7349533	11	3.4	11	82	17	51	34	0	5	60	1.19
7349692--7349729	2	19.5	2	94	5	69	50	0	0	50	1.00
7349774--7349851	25	3.3	22	78	12	66	50	3	1	44	1.28
7349944--7349995	21	2.5	21	77	0	59	32	5	3	57	1.40
7350541--7350574	11	3.2	11	87	8	52	26	14	0	58	1.36
7350625--7350649	12	2.1	12	100	0	50	32	0	0	68	0.90
7350634--7350690	23	2.5	22	82	2	69	40	0	1	57	1.09
7350634--7350691	22	2.6	22	78	10	64	41	0	1	56	1.09
7352608--7352676	28	2.3	30	83	14	90	53	0	1	44	1.09
7352685--7352723	15	2.7	15	88	4	53	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117