genome.fa.s90.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  68  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14653197--14653401	79	2.6	78	82	3	250	20	17	14	46	1.83
14653210--14653643	212	2.0	212	85	0	591	20	18	14	46	1.84
14653422--14653872	79	5.6	79	75	6	345	21	16	14	48	1.81
14653416--14653893	243	2.0	242	86	2	674	21	16	14	47	1.83
14653817--14653976	86	1.9	85	82	1	203	25	20	11	41	1.86
14655148--14655200	18	2.9	18	70	10	54	32	1	1	64	1.15
14655286--14655333	25	1.9	25	83	8	62	56	2	6	35	1.36
14655242--14655940	133	5.3	133	80	10	629	49	5	10	35	1.59
14655579--14655685	56	1.9	56	92	0	178	45	5	12	36	1.65
14655635--14655945	67	4.6	68	83	7	377	49	5	10	33	1.62
14658096--14658165	20	3.7	19	77	22	76	75	2	1	20	1.00
14658095--14658166	13	5.8	12	76	16	76	75	2	1	20	1.01
14658101--14658172	6	11.5	6	75	16	58	76	2	1	19	0.99
14658077--14658166	38	2.3	38	82	14	105	73	3	2	21	1.09
14658095--14658174	14	5.6	13	73	21	63	76	2	1	20	0.97
14658096--14658173	18	4.2	19	80	13	76	76	2	1	19	0.96
14658403--14658445	19	2.2	20	88	8	63	60	25	0	13	1.34
14658947--14659069	3	42.3	3	69	9	67	60	6	4	29	1.40
14659007--14659069	25	2.6	24	79	2	72	61	6	3	28	1.36
14659409--14659521	56	2.0	55	85	8	149	35	17	25	21	1.95
14659791--14660012	69	3.2	69	79	11	220	37	11	18	32	1.87
14660660--14660955	127	2.3	126	79	4	283	43	11	24	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14660722--14661011	127	2.3	127	76	2	278	44	11	23	21	1.84
14662687--14662784	13	7.2	13	70	17	56	6	6	5	82	0.94
14662689--14662794	21	5.0	21	76	17	85	6	6	5	81	1.00
14662702--14662794	8	11.0	8	72	19	55	6	5	6	81	0.97
14662704--14662767	27	2.4	26	84	5	74	7	6	3	82	0.92
14662687--14662793	34	3.1	34	78	14	103	6	6	4	82	0.95
14662701--14662784	26	3.2	25	77	12	73	5	4	5	83	0.91
14666758--14666785	12	2.3	12	100	0	56	67	14	0	17	1.22
14666783--14666814	17	1.9	16	100	0	55	81	3	0	15	0.82
14667596--14667715	3	42.0	3	74	15	94	62	3	1	32	1.21
14667596--14667677	32	2.7	30	74	10	80	63	3	1	31	1.19
14667599--14667715	40	2.9	39	82	8	114	62	3	1	32	1.22
14667596--14667715	45	2.6	45	81	9	136	62	3	1	32	1.21
14672391--14672423	16	2.1	16	100	0	66	12	30	33	24	1.91
14676345--14676391	23	2.0	23	87	0	67	38	10	14	36	1.81
14684667--14684693	14	1.9	14	100	0	54	40	14	7	37	1.74
14687515--14687931	138	3.0	138	90	1	642	43	11	10	35	1.75
14690232--14690332	47	2.2	45	87	7	148	31	10	14	42	1.81
14690232--14690332	46	2.2	47	86	10	145	31	10	14	42	1.81
14693619--14693665	20	2.4	20	82	3	60	21	10	25	42	1.85
14693929--14693960	3	10.7	3	100	0	64	31	0	0	68	0.90
14694987--14695029	18	2.4	19	80	11	54	4	20	11	62	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14696952--14696992	22	2.0	20	85	9	55	34	34	9	21	1.87
14699740--14699783	18	2.4	18	96	0	79	20	18	11	50	1.77
14702338--14702385	20	2.4	20	82	6	53	29	14	8	47	1.73
14702447--14702492	19	2.4	19	92	0	74	19	10	13	56	1.66
14704155--14704269	45	2.5	46	83	7	153	35	7	15	40	1.76
14704543--14704581	17	2.3	17	90	0	60	41	17	10	30	1.83
14704841--14705117	52	5.3	53	77	8	221	34	9	15	41	1.79
14704886--14705117	52	4.5	51	80	5	232	32	9	15	42	1.78
14705104--14705194	43	2.1	43	80	8	96	34	3	16	46	1.64
14706563--14706605	18	2.4	18	85	11	61	13	2	2	81	0.89
14706593--14706639	17	2.8	17	83	0	58	10	6	8	74	1.22
14707887--14707950	32	2.1	29	82	8	74	7	3	7	81	0.97
14708847--14708880	9	3.7	9	92	4	50	14	2	8	73	1.19
14709410--14709441	11	2.8	11	95	4	55	0	12	0	87	0.54
14709411--14709441	16	2.0	15	93	6	53	0	9	0	90	0.46
14709905--14709964	26	2.3	26	82	0	75	18	0	36	45	1.50
14711832--14711875	18	2.3	20	84	7	56	22	11	18	47	1.80
14712640--14712697	30	1.9	30	82	6	73	12	13	0	74	1.08
14713033--14713071	20	2.0	20	90	5	62	7	17	0	74	1.05
14715716--14715740	13	1.9	13	100	0	50	48	8	0	44	1.32
14716005--14716179	67	2.7	64	80	8	176	37	9	9	44	1.69
14716252--14716394	66	2.2	66	81	6	164	35	9	8	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14716559--14716600	20	2.2	19	83	12	50	78	2	4	14	1.01
14716884--14716929	21	2.2	21	81	11	60	56	13	6	23	1.60
14716885--14716931	20	2.3	20	86	13	62	53	12	6	27	1.63
14718409--14718468	22	2.7	22	79	7	59	63	1	3	31	1.20
14720738--14720819	20	4.4	18	69	13	58	62	7	1	29	1.30
14720829--14720871	22	2.0	22	86	9	61	44	0	6	48	1.29
14720954--14720997	19	2.3	19	88	11	63	36	0	6	56	1.26
14720932--14720990	31	1.9	31	82	6	75	42	0	6	50	1.28
14720950--14720999	20	2.5	21	84	15	70	38	0	8	54	1.30
14721132--14721216	19	4.6	18	70	9	64	38	4	2	54	1.34
14721143--14721231	38	2.3	39	81	7	103	38	4	1	56	1.27
14721159--14721258	39	2.7	37	79	4	103	39	3	1	57	1.21
14721206--14721274	35	1.9	36	85	2	95	42	0	0	57	0.98
14721462--14721493	2	16.5	2	93	6	57	50	0	0	50	1.00
14729771--14729810	3	13.3	3	100	0	80	32	0	0	67	0.91
14730895--14731046	34	4.5	34	76	4	164	41	9	9	39	1.70
14730895--14731044	67	2.2	68	86	3	205	42	9	10	38	1.71
14735823--14735863	20	2.0	20	100	0	82	9	36	19	34	1.85
14736414--14736508	18	5.5	17	67	20	54	29	3	1	66	1.14
14736484--14736508	3	8.3	3	100	0	50	32	0	0	68	0.90
14739495--14739537	20	2.1	21	83	12	54	25	11	16	46	1.80
14741293--14741365	30	2.4	30	86	0	101	42	2	20	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14743718--14743804	41	2.1	42	82	2	104	42	27	8	21	1.81
14744854--14744904	19	2.5	20	87	9	77	41	7	5	45	1.57
14747158--14747200	12	3.6	12	77	0	50	23	11	2	62	1.40
14747155--14747196	16	2.6	16	92	0	66	21	11	2	64	1.38
14747155--14747203	20	2.5	20	89	0	80	22	14	2	61	1.43
14749723--14749827	52	2.0	52	90	0	165	26	18	20	35	1.95
14753764--14753789	10	2.6	10	100	0	52	80	0	19	0	0.71
14757196--14757311	60	1.9	60	82	3	144	31	17	18	32	1.94
14757671--14757854	85	2.2	84	79	4	183	29	17	16	36	1.92
14758007--14758075	26	2.7	25	80	8	68	71	10	4	14	1.29
14758032--14758090	24	2.5	25	86	8	79	74	8	6	10	1.22
14758033--14758090	25	2.4	23	85	5	71	75	6	6	10	1.17
14758057--14758112	21	2.7	21	83	10	71	75	5	8	10	1.19
14760555--14760594	11	3.6	11	80	12	55	25	20	7	47	1.75
14763054--14763276	126	1.8	125	81	6	285	26	13	14	44	1.83
14763158--14763862	130	5.2	138	78	10	631	27	12	11	48	1.75
14762941--14763818	139	6.6	133	75	11	472	27	11	12	47	1.76
14765360--14765389	10	3.0	10	95	0	51	86	3	10	0	0.67
14766633--14766714	33	2.5	33	89	0	137	40	2	21	35	1.67
14766846--14767029	83	2.2	84	85	3	239	28	13	20	38	1.89
14766879--14767054	84	2.1	83	85	3	228	26	15	18	38	1.91
14767499--14767723	22	10.2	22	71	3	166	31	24	15	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14767499--14767723	66	3.4	66	77	4	211	31	24	15	29	1.95
14767521--14767837	44	7.2	45	71	8	199	30	21	15	31	1.95
14769874--14769902	13	2.1	14	93	6	51	24	10	13	51	1.72
14769981--14770029	20	2.5	19	83	9	62	42	2	8	46	1.45
14769986--14770057	19	3.8	18	72	9	56	34	4	12	48	1.60
14770081--14770135	19	2.8	20	83	5	67	27	5	14	52	1.63
14770868--14770974	7	15.1	7	75	9	74	48	28	1	20	1.60
14770868--14770974	28	3.8	28	86	4	119	48	28	1	20	1.60
14770909--14770975	7	9.6	7	83	6	82	49	34	0	16	1.46
14770881--14770974	14	6.7	14	78	9	102	48	29	2	19	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117